gnu: Add r-bedr.

* gnu/packages/cran.scm (r-bedr): New variable.
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Ricardo Wurmus 2019-03-24 12:09:05 +01:00
parent 79db3a1a33
commit f33cb7ab7e
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@ -40,6 +40,7 @@
#:use-module (guix build-system r)
#:use-module (gnu packages algebra)
#:use-module (gnu packages base)
#:use-module (gnu packages bioinformatics)
#:use-module (gnu packages compression)
#:use-module (gnu packages curl)
#:use-module (gnu packages databases)
@ -11873,3 +11874,36 @@ extensions.")
"This package integrates sophisticated mixed modelling methods with a
whole genome approach to detecting significant QTL in linkage maps.")
(license license:gpl2+)))
(define-public r-bedr
(package
(name "r-bedr")
(version "1.0.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "bedr" version))
(sha256
(base32
"0q790695h8bls0qw284n1zn7lxzym1dnnj095fsbjga2p116z4yv"))))
(build-system r-build-system)
(propagated-inputs
`(("r-data-table" ,r-data-table)
("r-r-utils" ,r-r-utils)
("r-testthat" ,r-testthat)
("r-venndiagram" ,r-venndiagram)
("r-yaml" ,r-yaml)
("bedops" ,bedops)
("bedtools" ,bedtools)
("htslib" ,htslib))) ; for tabix
(native-inputs
`(("r-knitr" ,r-knitr))) ; for vignettes
(home-page "https://cran.r-project.org/web/packages/bedr")
(synopsis "Genomic region processing")
(description
"This package is for genomic regions processing using command line tools
such as BEDTools, BEDOPS and Tabix. These tools offer scalable and efficient
utilities to perform genome arithmetic e.g indexing, formatting and merging.
The bedr package's API enhances access to these tools as well as offers
additional utilities for genomic regions processing.")
(license license:gpl2)))