gnu: Add r-txdb-hsapiens-ucsc-hg19-knowngene.

* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene):
  New variable.
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Ricardo Wurmus 2016-09-21 22:45:41 +02:00 committed by Ricardo Wurmus
parent 684f29bd2e
commit f3cfe4515a
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@ -5422,6 +5422,38 @@ annotation infrastructure.")
"This package provides a pipeline for the analysis of GRO-seq data.")
(license license:gpl3+)))
(define-public r-txdb-hsapiens-ucsc-hg19-knowngene
(package
(name "r-txdb-hsapiens-ucsc-hg19-knowngene")
(version "3.2.2")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "http://bioconductor.org/packages/"
"release/data/annotation/src/contrib"
"/TxDb.Hsapiens.UCSC.hg19.knownGene_"
version ".tar.gz"))
(sha256
(base32
"1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86"))))
(properties
`((upstream-name . "TxDb.Hsapiens.UCSC.hg19.knownGene")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-genomicfeatures" ,r-genomicfeatures)))
(home-page
"http://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg19.knownGene/")
(synopsis "Annotation package for human genome in TxDb format")
(description
"This package provides an annotation database of Homo sapiens genome
data. It is derived from the UCSC hg19 genome and based on the \"knownGene\"
track. The database is exposed as a @code{TxDb} object.")
(license license:artistic2.0)))
(define-public vsearch
(package
(name "vsearch")