gnu: bcftools: Update to 1.9.
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.9. [arguments]: Remove obsolete make flags.
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@ -288,34 +288,25 @@ BAM files.")
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(define-public bcftools
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(package
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(name "bcftools")
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(version "1.8")
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(version "1.9")
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(source (origin
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(method url-fetch)
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(uri (string-append
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"https://github.com/samtools/bcftools/releases/download/"
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(uri (string-append "https://github.com/samtools/bcftools/"
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"releases/download/"
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version "/bcftools-" version ".tar.bz2"))
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(sha256
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(base32
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"1vgw2mwngq20c530zim52zvgmw1lci8rzl33pvh44xqk3xlzvjsa"))
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"1j3h638i8kgihzyrlnpj82xg1b23sijibys9hvwari3fy7kd0dkg"))
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(modules '((guix build utils)))
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(snippet '(begin
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;; Delete bundled htslib.
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(delete-file-recursively "htslib-1.8")
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(delete-file-recursively "htslib-1.9")
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#t))))
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(build-system gnu-build-system)
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(arguments
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`(#:test-target "test"
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#:configure-flags (list "--with-htslib=system")
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#:make-flags
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(list
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"USE_GPL=1"
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"LIBS=-lgsl -lgslcblas"
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(string-append "prefix=" (assoc-ref %outputs "out"))
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(string-append "HTSDIR=" (assoc-ref %build-inputs "htslib") "/include")
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(string-append "HTSLIB=" (assoc-ref %build-inputs "htslib") "/lib/libhts.so")
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(string-append "BGZIP=" (assoc-ref %build-inputs "htslib") "/bin/bgzip")
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(string-append "TABIX=" (assoc-ref %build-inputs "htslib") "/bin/tabix")
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(string-append "PACKAGE_VERSION=" ,version))
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`(#:configure-flags
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(list "--enable-libgsl")
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#:test-target "test"
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#:phases
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(modify-phases %standard-phases
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(add-before 'check 'patch-tests
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