gnu: Add r-geoquery.
* gnu/packages/bioconductor.scm (r-geoquery): New variable.
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@ -2123,3 +2123,34 @@ distributions.")
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different normalization schemes for single-cell RNA-seq and other
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high-throughput analyses.")
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(license license:artistic2.0)))
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(define-public r-geoquery
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(package
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(name "r-geoquery")
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(version "2.50.5")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "GEOquery" version))
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(sha256
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(base32
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"074dl00c8yi1ihpjkw7vl9vy2hggvipib0jn0hli0wrw7x1h9hg6"))))
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(properties `((upstream-name . "GEOquery")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biobase" ,r-biobase)
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("r-dplyr" ,r-dplyr)
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("r-httr" ,r-httr)
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("r-limma" ,r-limma)
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("r-magrittr" ,r-magrittr)
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("r-readr" ,r-readr)
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("r-tidyr" ,r-tidyr)
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("r-xml2" ,r-xml2)))
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(home-page "https://github.com/seandavi/GEOquery/")
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(synopsis "Get data from NCBI Gene Expression Omnibus (GEO)")
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(description
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"The NCBI Gene Expression Omnibus (GEO) is a public repository of
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microarray data. Given the rich and varied nature of this resource, it is
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only natural to want to apply BioConductor tools to these data. GEOquery is
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the bridge between GEO and BioConductor.")
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(license license:gpl2)))
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