gnu: Add r-geoquery.

* gnu/packages/bioconductor.scm (r-geoquery): New variable.
This commit is contained in:
Ricardo Wurmus 2019-03-13 13:15:24 +01:00
parent f088775799
commit f9201d6704
No known key found for this signature in database
GPG Key ID: 197A5888235FACAC
1 changed files with 31 additions and 0 deletions

View File

@ -2123,3 +2123,34 @@ distributions.")
different normalization schemes for single-cell RNA-seq and other
high-throughput analyses.")
(license license:artistic2.0)))
(define-public r-geoquery
(package
(name "r-geoquery")
(version "2.50.5")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "GEOquery" version))
(sha256
(base32
"074dl00c8yi1ihpjkw7vl9vy2hggvipib0jn0hli0wrw7x1h9hg6"))))
(properties `((upstream-name . "GEOquery")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-dplyr" ,r-dplyr)
("r-httr" ,r-httr)
("r-limma" ,r-limma)
("r-magrittr" ,r-magrittr)
("r-readr" ,r-readr)
("r-tidyr" ,r-tidyr)
("r-xml2" ,r-xml2)))
(home-page "https://github.com/seandavi/GEOquery/")
(synopsis "Get data from NCBI Gene Expression Omnibus (GEO)")
(description
"The NCBI Gene Expression Omnibus (GEO) is a public repository of
microarray data. Given the rich and varied nature of this resource, it is
only natural to want to apply BioConductor tools to these data. GEOquery is
the bridge between GEO and BioConductor.")
(license license:gpl2)))