gnu: Add python-plastid.

* gnu/packages/bioinformatics.scm (python-plastid, python2-plastid): New
  variables.
This commit is contained in:
Ricardo Wurmus 2016-04-06 16:35:09 +02:00
parent 4db9433aa0
commit f94bf1983b
1 changed files with 40 additions and 0 deletions

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@ -950,6 +950,46 @@ UCSC genome browser.")
(native-inputs `(("python2-setuptools" ,python2-setuptools)
,@(package-native-inputs base))))))
(define-public python-plastid
(package
(name "python-plastid")
(version "0.4.5")
(source (origin
(method url-fetch)
(uri (pypi-uri "plastid" version))
(sha256
(base32
"1nhxw8a5gn9as58i2ih52c5cjwj48ik418pzsjwph3s66mmy9yvq"))))
(properties `((python2-variant . ,(delay python2-plastid))))
(build-system python-build-system)
(arguments
;; Some test files are not included.
`(#:tests? #f))
(propagated-inputs
`(("python-numpy" ,python-numpy)
("python-scipy" ,python-scipy)
("python-pandas" ,python-pandas)
("python-pysam" ,python-pysam)
("python-matplotlib" ,python-matplotlib)
("python-biopython" ,python-biopython)
("python-twobitreader" ,python-twobitreader)))
(native-inputs
`(("python-cython" ,python-cython)
("python-nose" ,python-nose)))
(home-page "https://github.com/joshuagryphon/plastid")
(synopsis "Python library for genomic analysis")
(description
"plastid is a Python library for genomic analysis in particular,
high-throughput sequencing data with an emphasis on simplicity.")
(license license:bsd-3)))
(define-public python2-plastid
(let ((base (package-with-python2 (strip-python2-variant python-plastid))))
(package
(inherit base)
(native-inputs `(("python2-setuptools" ,python2-setuptools)
,@(package-native-inputs base))))))
(define-public cd-hit
(package
(name "cd-hit")