gnu: Add python-velocyto.
* gnu/packages/bioinformatics.scm (python-velocyto): New variable.
This commit is contained in:
parent
55a0a3c853
commit
fd4c7a098a
|
@ -14209,3 +14209,34 @@ short read sequences, removes errors then produces high quality unique
|
|||
contigs. It then uses paired read information, if available, to retrieve the
|
||||
repeated areas between contigs.")
|
||||
(license license:gpl2+)))
|
||||
|
||||
(define-public python-velocyto
|
||||
(package
|
||||
(name "python-velocyto")
|
||||
(version "0.17.17")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "velocyto" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0fgygyzqgrq32dv6a00biq1p1cwi6kbl5iqblxq1kklj6b2mzmhs"))))
|
||||
(build-system python-build-system)
|
||||
(propagated-inputs
|
||||
`(("python-click" ,python-click)
|
||||
("python-cython" ,python-cython)
|
||||
("python-h5py" ,python-h5py)
|
||||
("python-loompy" ,python-loompy)
|
||||
("python-matplotlib" ,python-matplotlib)
|
||||
("python-numba" ,python-numba)
|
||||
("python-numpy" ,python-numpy)
|
||||
("python-pandas" ,python-pandas)
|
||||
("python-pysam" ,python-pysam)
|
||||
("python-scikit-learn" ,python-scikit-learn)
|
||||
("python-scipy" ,python-scipy)))
|
||||
(home-page "https://github.com/velocyto-team/velocyto.py")
|
||||
(synopsis "RNA velocity analysis for single cell RNA-seq data")
|
||||
(description
|
||||
"Velocyto is a library for the analysis of RNA velocity. Velocyto
|
||||
includes a command line tool and an analysis pipeline.")
|
||||
(license license:bsd-2)))
|
||||
|
|
Loading…
Reference in New Issue