From fe52a215e53514d1857131e3a75104a081e415b6 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 16 Mar 2018 15:03:02 +0100 Subject: [PATCH] gnu: pigx-rnaseq: Disable memory hungry test. * gnu/packages/bioinformatics.scm (pigx-rnaseq)[arguments]: Add phase to disable a memory hungry test. --- gnu/packages/bioinformatics.scm | 7 +++++++ 1 file changed, 7 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 1b49cfdfbf..fa4a4957b7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -12677,6 +12677,13 @@ once. This package provides tools to perform Drop-seq analyses.") `(#:parallel-tests? #f ; not supported #:phases (modify-phases %standard-phases + ;; "test.sh" runs STAR, which requires excessive amounts of memory. + (add-after 'unpack 'disable-resource-intensive-test + (lambda _ + (substitute* "Makefile.in" + (("(^ tests/test_trim_galore/test.sh).*" _ m) m) + (("^ test.sh") "")) + #t)) (add-after 'install 'wrap-executable ;; Make sure the executable finds all R modules. (lambda* (#:key inputs outputs #:allow-other-keys)