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gnu: deeptools: Update to 2.5.1. 

* gnu/packages/bioinformatics.scm (deeptools): Update to 2.5.1.
[arguments]: Remove.
[native-inputs]: Use "python-" instead of "python2-" variants.
[inputs]: Likewise; add python-py2bit.
This commit is contained in:
Ricardo Wurmus 2017-07-02 15:05:28 +02:00
parent eb2200f3bd
commit fed7200862
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1 changed files with 12 additions and 14 deletions
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@ -2080,7 +2080,7 @@ with Python.")
(define-public deeptools (define-public deeptools
(package (package
(name "deeptools") (name "deeptools")
(version "2.1.1") (version "2.5.1")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append "https://github.com/fidelram/deepTools/" (uri (string-append "https://github.com/fidelram/deepTools/"
@ -2088,22 +2088,20 @@ with Python.")
(file-name (string-append name "-" version ".tar.gz")) (file-name (string-append name "-" version ".tar.gz"))
(sha256 (sha256
(base32 (base32
"1nmfin0zjdby3vay3r4flvz94dr6qjhj41ax4yz3vx13j6wz8izd")))) "1q8i12l2gvk4n2s8lhyzwhh9g4qbc8lrk5l7maz00yvd5g6z5540"))))
(build-system python-build-system) (build-system python-build-system)
(arguments
`(#:python ,python-2))
(inputs (inputs
`(("python-scipy" ,python2-scipy) `(("python-scipy" ,python-scipy)
("python-numpy" ,python2-numpy) ("python-numpy" ,python-numpy)
("python-numpydoc" ,python2-numpydoc) ("python-numpydoc" ,python-numpydoc)
("python-matplotlib" ,python2-matplotlib) ("python-matplotlib" ,python-matplotlib)
("python-bx-python" ,python2-bx-python) ("python-pysam" ,python-pysam)
("python-pysam" ,python2-pysam) ("python-py2bit" ,python-py2bit)
("python-pybigwig" ,python2-pybigwig))) ("python-pybigwig" ,python-pybigwig)))
(native-inputs (native-inputs
`(("python-mock" ,python2-mock) ;for tests `(("python-mock" ,python-mock) ;for tests
("python-nose" ,python2-nose) ;for tests ("python-nose" ,python-nose) ;for tests
("python-pytz" ,python2-pytz))) ;for tests ("python-pytz" ,python-pytz))) ;for tests
(home-page "https://github.com/fidelram/deepTools") (home-page "https://github.com/fidelram/deepTools")
(synopsis "Tools for normalizing and visualizing deep-sequencing data") (synopsis "Tools for normalizing and visualizing deep-sequencing data")
(description (description