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16704 Commits

Author SHA1 Message Date
Roel Janssen 8af47ef603
gnu: r-nmf: Use bigmemory. 
* gnu/packages/statistics.scm (r-nmf)[propagated-inputs]: Add
r-bigmemory and r-synchronicity.
 2016-11-04 14:53:24 +01:00
Roel Janssen 59523c4cf5
gnu: Add r-bigmemory. 
* gnu/packages/statistics.scm (r-bigmemory): New variable.
 2016-11-04 14:46:47 +01:00
Roel Janssen 4a83865286
gnu: Add r-synchronicity. 
* gnu/packages/statistics.scm (r-synchronicity): New variable.
 2016-11-04 14:40:13 +01:00
Roel Janssen c6105d69c0
gnu: Add r-bigmemory-sri. 
gnu/packages/statistics.scm (r-bigmemory-sri): New variable.
 2016-11-04 14:35:04 +01:00
宋文武 1a79d4767a
gnu: xmp: Update to 4.1.0. 
* gnu/packages/audio.scm (xmp): Update to 4.1.0.
 2016-11-04 21:08:44 +08:00
宋文武 2784fca032
gnu: libxmp: Update to 4.4.1. 
* gnu/packages/audio.scm (libxmp): Update to 4.4.1.
 2016-11-04 21:08:44 +08:00
Florian Paul Schmidt 18f3d92b39
gnu: Add swh-plugins-lv2. 
* gnu/packages/audio.scm (swh-plugins-lv2): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2016-11-04 12:11:06 +01:00
Ricardo Wurmus 55436048d8
gnu: Add python-bleach. 
* gnu/packages/python.scm (python-bleach, python2-bleach): New
variables.
 2016-11-04 11:32:35 +01:00
Ricardo Wurmus 2d321bb2c5
gnu: Add python-nbformat. 
* gnu/packages/python.scm (python-nbformat, python2-nbformat): New
variables.
 2016-11-04 11:29:16 +01:00
Ricardo Wurmus 8ee62c97f6
gnu: Add python-html5lib-0.9. 
* gnu/packages/python.scm (python-html5lib-0.9, python2-html5lib-0.9):
New variables.
 2016-11-04 11:26:34 +01:00
Ricardo Wurmus 5ff6effcc0
gnu: Add python-testpath. 
* gnu/packages/python.scm (python-testpath, python2-testpath): New
variables.
 2016-11-04 11:24:02 +01:00
Ricardo Wurmus ab526102ed
gnu: Add python-ipykernel. 
* gnu/packages/python.scm (python-ipykernel, python2-ipykernel): New
variables.
 2016-11-04 11:23:19 +01:00
Ricardo Wurmus 9ff01f2d01
gnu: Add python-jupyter-client. 
* gnu/packages/python.scm (python-jupyter-client,
python2-jupyter-client): New variables.
 2016-11-04 11:22:54 +01:00
Ricardo Wurmus 4263b06fa2
gnu: Add python-jupyter-core. 
* gnu/packages/python.scm (python-jupyter-core, python2-jupyter-core):
New variables.
 2016-11-04 11:21:37 +01:00
Ricardo Wurmus a5ba14811a
gnu: python-traitlets: Update to 4.2.0. 
* gnu/packages/python.scm (python-traitlets): Update to 4.2.0.
 2016-11-04 11:19:22 +01:00
Leo Famulari 8d806cb0e0
gnu: ola: Fix build failure caused by use of deprecated function. 
* gnu/packages/patches/ola-readdir-r.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/lighting.scm (ola)[source]: Use it.
 2016-11-04 01:44:42 -04:00
Marius Bakke 6e1d7aa94e
gnu: Add font-adobe-source-code-pro. 
* gnu/packages/fonts.scm (font-adobe-source-code-pro): New variable.
 2016-11-03 20:32:04 +00:00
Marius Bakke b4edcd28cf
gnu: Add geteltorito. 
* gnu/packages/cdrom.scm (geteltorito): New variable.
 2016-11-03 20:31:36 +00:00
Kei Kebreau ccbc575824
gnu: maxima: Update to 5.38.1. 
* gnu/packages/maths.scm (maxima): Update to 5.38.1.
 2016-11-03 16:14:05 -04:00
Kei Kebreau 043f1535c2
gnu: starfighter: Update to 1.6. 
* gnu/packages/games.scm (starfighter): Update to 1.6.
 2016-11-03 15:40:17 -04:00
Ricardo Wurmus ed8fbe5e62
gnu: r-rcas: Update to 1.0.0. 
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.0.0.
 2016-11-03 19:01:46 +01:00
Ricardo Wurmus 16a8bd3194
gnu: r-rtracklayer: Update to 1.34.1. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.34.1.
 2016-11-03 19:01:46 +01:00
Ricardo Wurmus c15ae9b008
gnu: r-biocparallel: Update to 1.8.1. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.8.1.
 2016-11-03 19:01:46 +01:00
Ricardo Wurmus 5b3b2d2f02
gnu: r-limma: Update to 3.30.2. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.2.
 2016-11-03 19:01:46 +01:00
Ricardo Wurmus ed3054231d
gnu: r-edger: Update to 3.16.1. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.1.
 2016-11-03 19:01:45 +01:00
Ricardo Wurmus e71659162b
gnu: r-hmisc: Update to 4.0.0. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0.0.
[propagated-inputs]: Add r-htmltable, r-htmltools, r-viridis,
r-survival.
 2016-11-03 19:01:45 +01:00
Ricardo Wurmus f158b92caf
gnu: r-r-oo: Update to 1.21.0. 
* gnu/packages/statistics.scm (r-r-oo): Update to 1.21.0.
 2016-11-03 19:01:45 +01:00
Ricardo Wurmus f890981690
gnu: r-openssl: Update to 0.9.5. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.5.
 2016-11-03 19:01:45 +01:00
Ricardo Wurmus fbe5161c7d
gnu: r-checkmate: Update to 1.8.2. 
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.2.
 2016-11-03 19:01:45 +01:00
Ricardo Wurmus 572e1a0ca7
gnu: r-acepack: Update to 1.4.1. 
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.1.
 2016-11-03 19:01:44 +01:00
Ricardo Wurmus 054a9a786b
gnu: r-gdtools: Update to 0.1.1. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.1.
[propagated-inputs]: Add r-withr.
 2016-11-03 19:01:44 +01:00
Ricardo Wurmus d13a4e2575
gnu: r-proto: Update to 1.0.0. 
* gnu/packages/statistics.scm (r-proto): Update to 1.0.0.
 2016-11-03 19:01:44 +01:00
Ricardo Wurmus ebbd4d0bfd
gnu: Add r-survival. 
* gnu/packages/statistics.scm (r-survival): New variable.
 2016-11-03 19:01:44 +01:00
Ricardo Wurmus ac3265abad
gnu: Add r-htmltable. 
* gnu/packages/web.scm (r-htmltable): New variable.
 2016-11-03 19:01:44 +01:00
Kei Kebreau b81245ccb3
[PATCH] gnu: Add libjxr. 
* gnu/packages/image.scm (libjxr): New variable.
* gnu/packages/patches/libjxr-fix-function-signature.patch: New file.
* gnu/packages/patches/libjxr-fix-typos.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patches.
 2016-11-03 13:43:23 -04:00
Ricardo Wurmus e3100110ce
import: cran: Fix off-by-one error. 
* guix/import/cran.scm (package->upstream-name): Do not include leading
slash in upstream name URL.
 2016-11-03 16:03:28 +01:00
Danny Milosavljevic b054b26a48
gnu: sunxi-tools: Update to 1.4.1. 
* gnu/packages/admin.scm (sunxi-tools): Update to 1.4.1.
[arguments]: Add "CC=gcc" "all" to #:make-flags.  Remove 'fix-Makefile'
phase.  Add 'install' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-11-03 15:58:04 +01:00
Ludovic Courtès 6cb02e6e00
tests: 'make check-system' prints the "build trace". 
* build-aux/run-system-tests.scm (run-system-tests): Pass
  #:print-build-trace to 'set-build-options*'.
 2016-11-03 15:44:49 +01:00
Arun Isaac 5d68e9d620
gnu: Add pdf2svg. 
* gnu/packages/pdf.scm (pdf2svg): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-11-03 14:33:50 +01:00
Ludovic Courtès 0dfebdaa9d
doc: State that the 'patches' field is unconditional. 
* doc/guix.texi (origin Reference): State that 'patches' is
unconditional.
 2016-11-03 11:27:38 +01:00
Ludovic Courtès 4c93fe83e8
gnu: mesa: Apply MIPS patch conditionally. 
Fixes <http://bugs.gnu.org/24833>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/gl.scm (mesa)[source](patches): Remove.
[native-inputs]: Add conditional "mips-patch" input.
[arguments]: Add conditional 'apply-mips-patch' phase.
 2016-11-03 11:24:39 +01:00
ng0 05e3865e07
gnu: gnurl: Update to 7.51.0 [fixes CVE-2016-{8615..8625}]. 
* gnu/packages/gnunet.scm (gnurl): Update to 7.51.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-11-02 23:16:11 -04:00
Leo Famulari b3cc0dce08
Merge branch 'master' into core-updates 2016-11-02 20:03:35 -04:00
Alex Sassmannshausen e681e347c4
gnu: Add perl-getopt-long. 
* gnu/packages/perl.scm (perl-getopt-long): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-11-02 14:23:24 +00:00
Marius Bakke cbf5889fe5
gnu: curl: Update replacement to 7.51.0 [fixes CVE-2016-{8615..8625}]. 
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.51.0.
(curl-7.50.3): Replace with ...
(curl-7.51.0): ... this.
 2016-11-02 12:01:37 +00:00
Mark H Weaver ac1dc6d12f
gnu: linux-libre: Update to 4.8.6. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.6.
 2016-11-02 07:31:53 -04:00
Mark H Weaver b3097a71c5
gnu: linux-libre@4.4: Update to 4.4.30. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.30.
 2016-11-02 07:29:28 -04:00
Ricardo Wurmus d439aa36ce
gnu: perl-test-simple: Update to 1.302062. 
* gnu/packages/perl.scm (perl-test-simple): Update to 1.302062.
 2016-11-02 11:51:46 +01:00
Marius Bakke 24dfc13bfa
gnu: re2: Update to 2016-11-01. 
* gnu/packages/regex.scm (re2): Update to 2016-11-01.
 2016-11-02 05:34:09 +00:00
Leo Famulari 86c61a6bd1
gnu: isc-dhcp: Update to 4.3.5 [fixes CVE-2016-8864]. 
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.5. Update bundled
'bind' to 9.9.9-P4.
 2016-11-01 21:46:09 -04:00