9e1fe3d0c3
bootloader: Emit warnings with 'warning'.
...
* gnu/bootloader.scm (bootloader-configuration-target): Use 'warning'
instead of 'issue-deprecation-warning'.
2017-08-28 09:56:33 +02:00
15d61488a6
gnu: xf86-video-freedreno: Add missing input.
...
* gnu/packages/xorg.scm (xf86-video-freedreno)[inputs]: Add zlib.
2017-08-28 10:14:25 +03:00
9baa969758
gnu: libzip: Fix CVE-2017-12858.
...
* gnu/packages/patches/libzip-CVE-2017-12858.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/compression.scm (libzip)[source]: Use it.
2017-08-27 19:51:45 -04:00
152fc9594e
gnu: srt2vtt: Update source URL.
...
* gnu/packages/video.scm (srt2vtt)[source]: Fetch sources from new URL.
2017-08-28 01:44:44 +02:00
51988e3a03
gnu: Give descriptive file-names for some Git sources.
...
* gnu/packages/java.scm (classpath-devel)[source]: Set the file-name.
* gnu/packages/guile.scm (guile-for-guile-emacs,
guile-syntax-highlight)[source]: Likewise.
2017-08-27 18:24:50 -04:00
5f13bf0972
gnu: Fetch several Git sources over HTTPS.
...
* gnu/packages/admin.scm (interrobang)[source]: Use HTTPS URL.
* gnu/packages/audio.scm (ardour)[source]: Likewise.
* gnu/packages/embedded.scm (libjaylink, openocd)[source]: Likewise.
* gnu/packages/gnome.scm (byzanz)[source]: Likewise.
* gnu/packages/gnunet.scm (guile-gnunet)[source]Likewise.
* gnu/packages/java.scm (classpath)[source]: Likewise.
* gnu/packages/microcom.scm (microcom)[source]: Likewise.
* gnu/packages/python.scm (python-axolotl-curve25519)[source]: Likewise.
* gnu/packages/rdesktop.scm (freerdp)[source]: Likewise.
* gnu/packages/shells.scm (rc)[source]: Likewise.
* gnu/packages/web.scm (libwebsockets)[source]: Use new source URL.
2017-08-27 18:24:49 -04:00
ad539230f1
gnu: youtube-dl: Update to 2017.08.27.1.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.08.27.1.
2017-08-27 22:58:19 +02:00
c10d502423
gnu: iodine: Fix path to ifconfig.
...
* gnu/packages/networking.scm (iodine)[arguments]: Fix path to ifconfig.
2017-08-27 22:23:51 +02:00
01f248b606
gnu: filezilla: Update to 3.27.1.
...
* gnu/packages/ftp.scm (filezilla): Update to 3.27.1.
2017-08-27 16:04:31 -04:00
a9af060e5d
gnu: libfilezilla: Update to 0.10.1.
...
* gnu/packages/ftp.scm (libfilezilla): Update to 0.10.1.
[native-inputs]: Add pkg-config.
2017-08-27 16:04:30 -04:00
1c059a6e16
gnu: wxwidgets: Update to 3.0.3.
...
* gnu/packages/wxwidgets.scm (wxwidgets): Update to 3.0.3.
[source]: Remove 'wxwidgets-fix-windowGTK.patch'.
* gnu/packages/patches/wxwidgets-fix-windowGTK.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-27 16:04:25 -04:00
2999dcd5b7
gnu: gnome: Install some GStreamer plugins.
...
* gnu/packages/gnome.scm (gnome): Add gst-plugins-base and gst-plugins-good.
This will allow stock GNOME installs to play Ogg Vorbis files, among other
things. It will also ensure that GST_PLUGIN_SYSTEM_PATH is set to a sensible
value when GNOME is installed to the system instead of the user profile.
2017-08-27 20:59:46 +02:00
39c853bd61
gnu: totem: Wrap environment for thumbnailer.
...
* gnu/packages/gnome.scm (totem): Wrap thumbnailer also in environment that
sets GST_PLUGIN_SYSTEM_PATH.
2017-08-27 20:59:35 +02:00
ff16170ab9
gnu: nano: Update to 2.8.7.
...
* gnu/packages/nano.scm (nano): Update to 2.8.7.
2017-08-27 16:29:37 +03:00
ebd181138e
gnu: perl: Work around more "dotless @INC" build failures.
...
* gnu/packages/perl.scm (perl-unicode-collate)[arguments]: Add
'set-perl-search-path' phase.
* gnu/packages/xorg.scm (perl-x11-xcb)[arguments]: Likewise.
2017-08-27 15:07:21 +02:00
88d5889c40
gnu: perl-www-opensearch: Provide Module::Install.
...
* gnu/packages/web.scm (perl-www-opensearch)[native-inputs]: Add PERL-MODULE-INSTALL.
2017-08-27 15:07:21 +02:00
522f199562
gnu: perl-xml-atom: Update to 0.42.
...
* gnu/packages/xml.scm (perl-xml-atom): Update to 0.42.
[arguments]: Add 'set-perl-search-path' phase.
[native-inputs]: Add PERL-HTML-TAGSET and PERL-MODULE-BUILD-TINY.
2017-08-27 15:07:21 +02:00
9978567460
gnu: babl: Update to 0.1.30.
...
* gnu/packages/gimp.scm (babl): Update to 0.1.30.
2017-08-27 15:07:21 +02:00
b45c050545
gnu: Remove unneeded import.
...
* gnu/packages/engineering.scm: Don't import (srfi srfi-1) in top scope.
2017-08-27 15:07:21 +02:00
fab46af832
gnu: tdb: Update to 1.3.15.
...
* gnu/packages/databases.scm (tdb): Update to 1.3.15.
2017-08-27 15:07:21 +02:00
6909c24093
gnu: enlightenment: Update to 0.21.9.
...
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.21.9.
2017-08-27 15:53:13 +03:00
ab11563797
gnu: xauth: Enable tests.
...
* gnu/packages/xorg.scm (xauth)[arguments]: Enable tests.
[native-inputs]: Add cmdtest.
2017-08-26 15:40:55 -04:00
cd669fdeb1
gnu: Add cmdtest.
...
* gnu/packages/check.scm (cmdtest): New variable.
Co-authored-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-26 15:26:45 -04:00
72e2815d18
Merge branch 'core-updates'
2017-08-26 15:15:49 +02:00
c20cd0d24d
gnu: gnome: Depend on xdg-user-dirs.
...
* gnu/packages/gnome.scm (gnome): Add xdg-user-dirs dependency. The presence
of the autostart file in /run/current-system/profile/etc/xdg should cause
xdg-user-dirs to be run when a user logs in, ensuring that they have
~/Pictures and other well-known user directories.
2017-08-26 13:37:30 +02:00
b9bf08f058
gnu: Add xdg-user-dirs.
...
* gnu/packages/freedesktop.scm (xdg-user-dirs): New public variable.
2017-08-26 13:37:19 +02:00
446695775d
gnu: Add radare2.
...
* gnu/packages/engineering.scm (radare2): New variable.
2017-08-26 13:01:36 +02:00
f70be0113f
gnu: Add python-capstone.
...
* gnu/packages/engineering.scm (python-capstone, python2-capstone): New
variables.
2017-08-26 13:01:32 +02:00
6febda9443
gnu: Add capstone.
...
* gnu/packages/engineering.scm (capstone): New variable.
2017-08-26 13:01:11 +02:00
d987a006dc
gnu: youtube-dl: Update to 2017.08.23.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.08.23.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-26 13:35:44 +05:30
acf7a958a6
gnu: pv: Update to 1.6.6.
...
* gnu/packages/pv.scm (pv): Update to 1.6.6.
2017-08-26 14:09:05 +08:00
828f0109ee
gnu: linux-libre: Update to 4.12.9.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.9.
(%linux-libre-hash): Update hash.
2017-08-25 23:53:32 -04:00
50e34c608e
gnu: linux-libre@4.9: Update to 4.9.45.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.45.
2017-08-25 23:52:58 -04:00
cd2247cccd
gnu: linux-libre@4.4: Update to 4.4.84.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.84.
2017-08-25 23:52:14 -04:00
2f837cf7fe
gnu: perl: Add more missing dependencies on Module::Install.
...
* gnu/packages/databases.scm (perl-dbix-class, perl-dbix-class-cursor-cached,
perl-dbix-class-introspectablem2m,
perl-dbix-class-schema-loader)[native-inputs]: Add PERL-MODULE-INSTALL.
* gnu/packages/web.scm (perl-catalyst-action-renderview,
perl-catalyst-action-rest, perl-catalyst-authentication-store-dbix-class,
perl-catalyst-component-instancepercontext, perl-catalyst-model-dbic-schema,
perl-catalyst-plugin-authentication,
perl-catalyst-plugin-authorization-roles, perl-catalyst-plugin-configloader,
perl-catalyst-plugin-session, perl-catalyst-plugin-session-state-cookie,
perl-catalyst-plugin-stacktrace, perl-catalyst-plugin-static-simple,
perl-catalyst-traitfor-request-proxybase, perl-catalyst-view-download,
perl-catalyst-view-json, perl-catalystx-script-server-starman,
perl-test-www-mechanize, perl-test-www-mechanize-catalyst)[native-inputs]:
Likewise.
* gnu/packages/xorg.scm (perl-x11-xcb)[native-inputs]: Likewise.
2017-08-25 22:24:10 +02:00
a21db79e52
gnu: perl-catalyst-runtime: Update to 5.90115.
...
* gnu/packages/web.scm (perl-catalyst-runtime): Update to 5.90115.
[native-inputs]: Add PERL-MODULE-INSTALL.
2017-08-25 22:23:53 +02:00
35131babc1
gnu: go: Update to 1.9.
...
* gnu/packages/golang.scm (go-1.8): Replace with ...
(go-1.9): ... new variable.
[arguments]: Adjust the pre-build phase accordingly.
2017-08-25 12:28:58 -04:00
6e99c01b4d
gnu: Add draft of gdm service.
...
* gnu/services/xorg.scm (%gdm-accounts, <gdm-configuration>)
(gdm-etc-service, gdm-pam-service, gdm-shepherd-service, gdm-service-programs)
(gdm-service-type, gdm-service): New public variables. Not yet working.
2017-08-25 16:01:56 +02:00
b6d8066d4d
gnu: services: Log debug messages to /var/log/debug.
...
* gnu/services/base.scm (%default-syslog.conf): Create a /var/log/debug with
messages logged to syslog at debug level.
2017-08-25 16:01:56 +02:00
e0e6756fbd
gnu: gdm: Fix environment of worker processes and sessions.
...
* gnu/packages/gnome.scm (gdm): Get X server path from GDM_X_SERVER
environment variable, and make sure this variable is propagated to internal
sub-processes. Launch sessions with a reasonable XDG_CONFIG_DIRS setting.
Get the custom GDM conf from the current system's profile.
2017-08-25 16:01:56 +02:00
957dbc0a4d
gnu: gdm: Use proper elogind check, and wrap environment.
...
* gnu/packages/gnome.scm (gdm): Use glib-or-gtk-build-system to make sure the
schemas are available to GDM. Install gdm to /bin to make this happen. Use a
proper elogind check.
2017-08-25 16:01:56 +02:00
af37e6bbd4
gnu: gdm: Look for sessions in /run/current-system.
...
* gnu/packages/gnome.scm (gdm): Fix search paths for system sessions. Use
/var as localstatedir. Set a more sensible default path for user sessions.
2017-08-25 16:01:56 +02:00
92753a8bad
gnu: services: Refactor to separate X and startx wrappers.
...
* gnu/services/xorg.scm (xorg-wrapper): New public function.
(xorg-start-command): Use xorg-wrapper.
2017-08-25 16:01:56 +02:00
063c608261
gnu: Add AccountsService service to desktop services.
...
* doc/guix.texi (Desktop Services): Add accountsservice-service.
* gnu/services/desktop.scm (%accountsservice-activation):
(accountsservice-service-type): New public variables.
(%desktop-services): Add accountsservice-service.
2017-08-25 16:01:56 +02:00
e76008dbc8
gnu: accountsservice: Properly reference shadow.
...
* gnu/packages/freedesktop.scm (accountsservice): Fix references to binaries
provided by the shadow package.
2017-08-25 16:01:45 +02:00
cb8b14f182
gnu: parallel: Update to 20170822.
...
* gnu/packages/parallel.scm (parallel): Update to 20170822.
2017-08-25 09:15:12 +03:00
1934769ba1
gnu: libmikmod: Add fallback source URL, needed for older versions.
...
* gnu/packages/sdl.scm (libmikmod)[source]: Add a fallback source URL where
older versions are kept.
2017-08-25 02:08:52 -04:00
0b4f40e4fa
gnu: yoshimi: Update to 1.5.3.
...
* gnu/packages/music.scm (yoshimi): Update to 1.5.3.
2017-08-25 04:55:05 +02:00
5cff549c60
gnu: zynaddsubfx: Update to 3.0.2.
...
* gnu/packages/music.scm (zynaddsubfx): Update to 3.0.2.
2017-08-25 04:51:07 +02:00
44aca1a3e5
gnu: guile-xcb: Update source URL.
...
* gnu/packages/guile-wm.scm (guile-xcb)[source]: Use archived tarball URL.
2017-08-25 02:15:14 +02:00
649c438c23
gnu: font-mathjax: Move to javascript.scm.
...
This avoids cross-module top-level references.
* gnu/packages/fonts.scm (font-mathjax): Move to...
* gnu/packages/javascript.scm (font-mathjax): ... here. New variable.
2017-08-24 23:55:51 +02:00
87f057c46e
gnu: font-go: Remove reference to 'go-1.4'.
...
This avoids circular references at the top level.
* gnu/packages/fonts.scm (font-go)[license]: Remove reference to
GO-1.4.
2017-08-24 23:55:51 +02:00
84342e2fa9
gnu: Add honcho.
...
* gnu/packages/python.scm (python-honcho, python2-honcho): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-24 21:27:23 +02:00
a251838d67
gnu: maim: Update to 5.4.68.
...
* gnu/packages/xdisorg.scm (maim): Update to 5.4.68.
2017-08-24 21:21:04 +02:00
8752fa6cba
gnu: slop: Update to 7.3.49.
...
* gnu/packages/xdisorg.scm (slop): Update to 7.3.49.
2017-08-24 21:21:04 +02:00
3f8efbb9a4
gnu: guile-wm: Update source URL.
...
* gnu/packages/guile-wm.scm (guile-wm)[source]: Use archived URL.
2017-08-24 20:42:45 +02:00
17e56dac12
gnu: libreoffice: Fix icons, enable liblangtag.
...
* gnu/packages/libreoffice.scm (libreoffice) [inputs]: Add liblangtag.
[arguments]: Correct icon names in .desktop files; copy desktop files &
icons for libreoffice-math and libreoffice-startcenter; enable parallel
build; enable liblangtag.
2017-08-24 19:52:16 +02:00
5cdb0cd380
gnu: dovecot: Update to 2.2.32.
...
* gnu/packages/mail.scm (dovecot): Update to 2.2.32.
2017-08-24 16:38:47 +02:00
5fc9b6c108
gnu: lollypop: Use pseudo meson build system.
...
* gnu/packages/gnome.scm (lollypop)[arguments]: Disable tests. Delete
configure phase, replace build and install phase with custom phases.
[native-inputs]: Add ninja.
[propagated-inputs]: Move gst-plugins-base ...
[inputs]: ... to here. Add meson.
2017-08-24 15:33:13 +03:00
e3c13d044f
gnu: libksysguard: Enable more tests (not all working yet).
...
* gnu/packages/kde.scm (libksysguard)[arguments]
<#:phases>'check-setup': Set QT_QPA_PLATFORM=offscreen.
<#:phases>'check': Enable all tests except of the failing one.
2017-08-24 12:32:34 +02:00
2d6da7942a
gnu: python2-ttystatus: Update to 0.35.
...
* gnu/packages/python.scm (python2-ttystatus): Update to 0.35.
2017-08-24 14:28:41 +05:30
f6c5821530
gnu: cliapp: Update to 1.20170823.
...
* gnu/packages/python.scm (python2-cliapp): Update to 1.20170823.
2017-08-24 14:20:45 +05:30
c47048c328
gnu: datamash: Update to 1.2.
...
* gnu/packages/datamash.scm (datamash): Update to 1.2.
2017-08-24 10:35:00 +03:00
045ebb3e58
gnu: bootloader: Deprecate "device" field in favor of "target".
...
* gnu/bootloader.scm (<bootloader-configuration>): Deprecate "device" field in
favor of "target" field. This is mostly a renaming but also a generalization
to support UEFI targets being paths to a mounted partition instead of a device
name.
* gnu/system/examples/bare-bones.tmpl:
* gnu/system/examples/desktop.tmpl:
* gnu/system/examples/lightweight-desktop.tmpl:
* gnu/system/examples/vm-image.tmpl:
* gnu/system/install.scm:
* gnu/tests.scm:
* gnu/tests/install.scm:
* gnu/tests/nfs.scm:
* tests/system.scm: Adapt all invocations of bootloader-configuration.
* guix/scripts/system.scm (perform-action): Rename device argument to
bootloader-target.
(process-action): Adapt caller.
* doc/guix.texi (Proceeding with the Installation):
* doc/guix.texi (Bootloader Configuration): Update documentation.
2017-08-23 22:23:19 +02:00
f81039058c
gnu: qemu: Fix CVE-2017-12809.
...
* gnu/packages/virtualization.scm (qemu)[source]: Add patch.
* gnu/packages/patches/qemu-CVE-2017-12809.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-23 21:56:55 +03:00
f00e328fd3
gnu: openjpeg: Fix CVE-2017-12982.
...
* gnu/packages/image.scm (openjepg)[source]: Add patch.
* gnu/packages/patches/openjpeg-CVE-2017-12982.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-23 21:07:07 +03:00
d7eea7d7ae
gnu: python-scikit-learn: Update to 0.19.0.
...
* gnu/packages/python.scm (python-scikit-learn): Update to 0.19.0.
2017-08-23 17:31:54 +02:00
cc527b5048
gnu: xpra: Update to 2.1.1.
...
* gnu/packages/xorg.scm (xpra): Update to 2.1.1.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2017-08-23 20:38:09 +08:00
8a7f958ed9
gnu: higan: Update to 104.
...
* gnu/packages/games.scm (higan): Update to 104.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2017-08-23 20:24:15 +08:00
56cdca9537
gnu: retroarch: Update to 1.6.7.
...
* gnu/packages/games.scm (retroarch): Update to 1.6.7.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2017-08-23 20:13:41 +08:00
35e657017c
gnu: id3lib: Remove bundled zlib.
...
* gnu/packages/mp3.scm (id3lib)[source]: Remove bundled zlib.
[inputs]: Add zlib.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2017-08-23 19:58:26 +08:00
c075c8fd0c
tests: Add 'libvirt-service-type' test.
...
* gnu/tests/virtualization.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2017-08-23 12:48:11 +01:00
e6051057ab
services: Add libvirt services
...
* gnu/services/virtualization.scm: New file.
* doc/guix.texi (Virtualization Services): Document it.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-08-23 12:47:24 +01:00
903e051a71
gnu: libvirt: Wrap with iproute and qemu.
...
libvirtd runs qemu if it's configured to use it, and also uses the ip command.
* gnu/packages/virtualization.scm (libvirt)[arguments]: Add wrap-libvirtd
phase.
2017-08-23 12:44:21 +01:00
0577a3fd92
gnu: Build the shared library for yaml-cpp.
...
* gnu/packages/serialization.scm (yaml-cpp)[arguments]: Add
-DBUILD_SHARED_LIBS=ON to #:configure-flags.
2017-08-23 10:07:22 +01:00
7d14082d56
services: herd: Actions return a list of results.
...
Fixes a regression introduced in
0642838b2e
2017-08-23 00:29:22 +02:00
4e58740aff
gnu: whois: Update to 5.2.18.
...
* gnu/packages/networking.scm (whois): Update to 5.2.18.
2017-08-22 23:17:14 +02:00
2e4569829e
gnu: Add f2fs-tools.
...
* gnu/packages/linux.scm (f2fs-tools): New variable.
2017-08-22 23:13:42 +02:00
7ac2cab8c9
gnu: Add icedtea-web.
...
* gnu/packages/java.scm (icedtea-web): New variable.
2017-08-22 23:02:13 +02:00
77a0354a36
gnu: gnurl: Update to 7.55.1-3.
...
* gnu/packages/gnunet.scm (gnurl): Update to 7.55.1-3.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2017-08-22 21:52:05 +02:00
39fc3004be
web: Remove the nginx-service procedure.
...
Now that the service-type has a default value, and configuration record is
accessible.
* gnu/services/web.scm (nginx-service): Remove procedure.
* doc/guix.texi (Web Services): Update and improve NGinx documentation.
2017-08-22 17:49:05 +01:00
ad4cc435e8
web: Add default-value for the nginx-service-type.
...
* gnu/services/web.scm (nginx-service-type)[default-value]:
Use (nginx-configuration).
2017-08-22 17:49:00 +01:00
e4b729f89c
web: Export more nginx related procedures, macros and record types.
...
This makes it possible to work with the configuration of the NGinx service
programatically.
* gnu/services/web.scm (<nginx-configuration>, <nginx-server-configuration>,
<nginx-upstream-configuration>, <nginx-location-configuration>,
<nginx-named-location-configuration>): Export NGinx related record
types.
(nginx-configuration-*, nginx-server-configuration-*,
nginx-upstream-configuration-*, nginx-location-configuration-*,
nginx-named-location-configuration-*): Export NGinx related record
procedures.
(nginx-configuration): Export NGinx related record macro.
2017-08-22 17:48:54 +01:00
bd3a184613
gnu: r-minimal: Do not compress serialized files.
...
* gnu/packages/statistics.scm (r-minimal)[arguments]: Replace build phase
"patch-which" with "do-not-compress-serialized-files".
[propagated-inputs]: Move "which" from here...
[inputs]: ...to here.
Fixes <https://bugs.gnu.org/28157 >.
2017-08-22 16:24:24 +02:00
6be54a8751
gnu: Add rmath-standalone.
...
* gnu/packages/statistics.scm (rmath-standalone): New variable.
2017-08-22 16:24:24 +02:00
94b179c675
gnu: gst-plugins-bad: Build with wayland support.
...
* gnu/packages/gstreamer.scm (gst-plugins-bad)[inputs]: Add wayland.
2017-08-22 17:04:39 +03:00
fe535d81ae
gnu: libraw: Update to 0.18.2.
...
* gnu/packages/photo.scm (libraw): Update to 0.18.2.
[source, home-page]: Use https.
2017-08-22 16:57:59 +03:00
0e4d822e3f
gnu: skalibs: Build reproducibly.
...
* gnu/packages/skarnet.scm (skalibs)[arguments]: Add #:phases.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-22 15:19:49 +02:00
c15374e03d
gnu: libjpeg-turbo: Build reproducibly.
...
* gnu/packages/image.scm (libjpeg-turbo)[arguments]: Add #:configure-flags.
Co-authored-by: Z. Ren <zren@dlut.edu.cn>
2017-08-22 15:19:49 +02:00
1206c95a49
gnu: python-netcdf4: Update to 1.2.9.
...
* gnu/packages/python.scm (python-netcdf4): Update to 1.2.9.
2017-08-22 09:02:32 +02:00
5c78db6222
gnu: python-h5py: Update to 2.7.0.
...
* gnu/packages/python.scm (python-h5py): Update to 2.7.0.
2017-08-22 09:02:24 +02:00
285e18e9ae
gnu: terminology: Update to 1.1.0.
...
* gnu/packages/enlightenment.scm (terminology): Update to 1.1.0.
[source]: Remove bundled fonts and references to them.
[native-inputs]: Add gettext-minimal.
2017-08-22 09:49:27 +03:00
61b31ac46f
gnu: Update emacs-rainbow-mode to 0.13.
...
* gnu/packages/emacs.scm (emacs-rainbow-mode): Update to 0.13.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-22 00:00:56 +02:00
86a9b1633c
gnu: python-internetarchive: Update to 1.7.1.
...
* gnu/packages/web.scm (python-internetarchive): Update to 1.7.1.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-22 00:00:56 +02:00
58f3d45996
gnu: python-marshmallow: Update to 3.0.0b3.
...
* gnu/packages/python.scm (python-marshmallow): Update to 3.0.0b3.
2017-08-21 22:54:38 +02:00
4ecab114fd
gnu: python-pylast: Update to 1.9.0.
...
* gnu/packages/python.scm (python-pylast): Update to 1.9.0.
2017-08-21 22:54:38 +02:00
3592a57255
gnu: lollypop: Update to 0.9.244.
...
* gnu/packages/gnome.scm (lollypop): Update to 0.9.244.
2017-08-21 22:54:37 +02:00
9f9d2a723f
gnu: gspell: Update to 1.4.2.
...
* gnu/packages/gnome.scm (gspell): Update to 1.4.2.
2017-08-21 22:54:37 +02:00
3ce16aeac5
gnu: imagemagick: Update to 6.9.9-9.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-9.
2017-08-21 22:48:44 +02:00
51eecee7b9
gnu: feh: Update to 2.19.3.
...
* gnu/packages/image-viewers.scm (feh): Update to 2.19.3.
2017-08-21 22:48:44 +02:00
88648855f8
gnu: perl-net-dns: Update to 1.12.
...
* gnu/packages/networking.scm (perl-net-dns): Update to 1.12.
2017-08-21 17:38:08 +02:00
46057c0a3f
gnu: zstd: Update to 1.3.1.
...
* gnu/packages/compression.scm (zstd): Update to 1.3.1.
2017-08-21 17:38:07 +02:00
6c171ff47c
gnu: openmpi: Configure without vampirtrace.
...
VT is obsoleted by scorep (not currently packaged) and disabling it reduces
the closure considerably.
* mpi.scm (openmpi)[arguments]: Configure without vampirtrace.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-21 17:04:54 +02:00
df981d8b36
gnu: openmpi: Modify configuration to reduce closure.
...
devel-headers are only for building MCA components, produce a large
closure and aren't normally packaged. Only the affinity component of
mpi-ext is useful.
* gnu/packages/mpi.scm (openmpi)[arguments]: Don't configure
--with-devel-headers and --enable-mpi-ext=all.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-21 17:04:54 +02:00
0d97d3cbff
gnu: openmpi: Remove references to compiler pathnames in "_info" programs.
...
This reduces the closure greatly, but note that the Fortran .mod files are
gfortran version-specific, so there should probably be development packages
for each incompatible version. (The runtime is supposed to be more-or-less
version-independent unless the libgfortran soname changes.) There may still
be a case for a separate runtime output.
* gnu/packages/mpi.scm (openmpi)[arguments]: Add "remove-absolute" phase.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-08-21 17:04:54 +02:00
84bf845abc
gnu: valgrind: Add separate "doc" output.
...
* gnu/packages/valgrind.scm (valgrind)[outputs]: New field.
[arguments]: Add 'install-doc' phase.
Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2017-08-21 17:04:54 +02:00
327404aeaa
gnu: openmpi: Remove "static" output.
...
--enable-static removes dynamically-loaded MCA components.
* gnu/packages/mpi.scm (openmpi)[outputs]: Remove field.
[arguments]: Don't configure with --enable-static; remove
'move-static-libraries' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-21 17:04:54 +02:00
685bef2bd1
gnu: openmpi: Add separate variant with thread-multiple support.
...
* gnu/packages/mpi.scm (openmpi)[arguments]: Remove
"--enable-mpi-thread-multiple".
(openmpi-thread-multiple): New variable.
Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2017-08-21 17:04:54 +02:00
cf684d87d7
gnu: z3: Build Python bindings.
...
* gnu/packages/maths.scm (z3): Add python bindings.
[build-system]: Change to cmake-build-system.
[arguments]: Remove "changedir" phase. Add "bootstrap" and
"make-test-z3" phases; replace the "check" phase.
Add #:configure-flags. Remove #:test-target.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-21 17:04:53 +02:00
bd2e321061
gnu: augeas: Update to 1.8.1. Fixes CVE-2017-7555.
...
* gnu/packages/augeas.scm (augeas): Update to 1.8.1.
2017-08-21 16:02:23 +03:00
2718a9cd09
Merge branch 'master' into core-updates
2017-08-21 02:40:37 +02:00
e904de7ec1
gnu: gnurl: Update to 7.55.1.
...
* gnu/packages/gnunet.scm (gnurl): Update to 7.55.1.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2017-08-21 01:05:06 +02:00
1dbd34329b
gnu: vifm: Update to 0.9.
...
* gnu/packages/vim.scm (vifm): Update to 0.9.
[source]: Add alternate uri.
[arguments]: Remove build timestamp. Add phase to install vim plugins
into vim plugin directory. Patch more shebangs.
2017-08-20 23:23:17 +03:00
bda6c35093
gnu: pspp: Update to 1.0.0.
...
* gnu/packages/statistics.scm (pspp): Update to 1.0.0.
2017-08-20 21:44:47 +03:00
9c4ce3afac
gnu: perl-test-trap: Update to 0.3.2.
...
* gnu/packages/perl.scm (perl-test-trap): Update to 0.3.2.
[source, version]: Remove 'v' prefix from version field.
2017-08-20 17:33:16 +02:00
7295a0c020
gnu: perl-test-trap: Add missing dependency on Test::Simple.
...
* gnu/packages/perl.scm (perl-test-trap)[native-inputs]: Add PERL-TEST-SIMPLE.
2017-08-20 17:33:16 +02:00
29a3325708
gnu: bundler: Update to 1.15.4.
...
* gnu/packages/ruby.scm (bundler): Update to 1.15.4.
2017-08-20 16:41:39 +02:00
3fa1b08213
gnu: limnoria: Update to 2017.08.18.
...
* gnu/packages/irc.scm (limnoria): Update to 2017.08.18.
2017-08-20 16:41:39 +02:00
6d7d9d9507
gnu: graphicsmagick: Fix CVE-2017-{12935,12936,12937}.
...
* gnu/packages/patches/graphicsmagick-CVE-2017-12935.patch,
gnu/packages/patches/graphicsmagick-CVE-2017-12936.patch,
gnu/packages/patches/graphicsmagick-CVE-2017-12937.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/imagemagick.scm (graphicsmagick)[source]: Use them.
2017-08-20 08:35:45 -04:00
a8cd352304
gnu: r-minimal: Work around failure to embed reference to "which".
...
* gnu/packages/statistics.scm (r-minimal)[arguments]: Add phase "patch-which".
[native-inputs]: Move "which" from here...
[propagated-inputs]: ...to here.
2017-08-20 14:00:04 +02:00
92a1cb9285
gnu: powertabeditor: Update to 2.0.0-alpha10.
...
* gnu/packages/music.scm (powertabeditor): Update to 2.0.0-alpha10.
[arguments]: Remove "set-target-directories" phase; disable additional tests.
2017-08-20 14:00:04 +02:00
17cddc1714
gnu: Add r-annotationfilter.
...
* gnu/packages/bioinformatics.scm (r-annotationfilter): New variable.
2017-08-20 14:00:04 +02:00
96d36f385c
gnu: Add gnome-default-applications.
...
* gnu/packages/gnome.scm (gnome-default-applications): New public variable.
(gnome): Propagate gnome-default-applications so that nautilus is associated
with folders, not baobab.
2017-08-20 13:11:06 +02:00
a9dbefdc9d
gnu: gnome: Propagate font-dejavu.
...
* gnu/packages/gnome.scm (gnome): Add font-dejavu to propagated inputs, to
provide a better default for "Monospace". Otherwise the terminal looks
horrible and defaults to Nimbus Mono, a Courier-like face.
2017-08-20 13:10:56 +02:00
50631fe933
gnu: gobby: Re-add Gobby 0.4.
...
* gnu/packages/gobby.scm (gobby-0.4): New variable.
2017-08-20 11:30:43 +02:00
63ad9b80c7
gnu: gnome: Propagate more packages.
...
* gnu/packages/gnome.scm (gnome): Add additional dependencies, inspired by
Debian's "gnome-core" package.
2017-08-20 11:16:56 +02:00
2941b347b6
gnu: grub-efi-bootloader: Specialize grub-install invocation.
...
* gnu/bootloader/grub.scm (install-grub-efi): Fix grub-install invocation for
EFI systems.
* gnu/system/examples/bare-bones.tmpl: Use the newer
"bootloader-configuration" syntax.
* gnu/system/examples/desktop.tmpl: Use bootloader-configuration sytax. Also,
use the same label for the LUKS-mapped device and the root partition. Remove
unneeded "title" field for the file-system based on LUKS; as noted in the
manual, the "title" field is ignored for mapped devices.
* gnu/system/examples/lightweight-desktop.tmpl: Use bootloader-configuration,
and use grub-efi-bootloader.
2017-08-20 11:16:42 +02:00
97291c0c7c
gnu: gobby: Update to 0.5.0.
...
* gnu/packages/gobby.scm (gobby): Update to 0.5.0.
[inputs]: Remove libnet6 and obby. Add libinfinity. Sort.
[arguments]: Add move-executable phase.
2017-08-20 10:52:56 +05:30
6a84ec8eb3
gnu: Add libinfinity.
...
* gnu/packages/gobby.scm (libinfinity): New variable.
2017-08-20 10:52:55 +05:30
36ed934dfe
gnu: icedtea@3: Update to 3.5.1.
...
* gnu/packages/java.scm (icedtea-8): Update to 3.5.1.
2017-08-19 18:50:04 -04:00
0c2e2b660d
gnu: icedtea@2: Update to 2.6.11 [security fixes].
...
Fixes CVE-2017-{10053,10067,10074,10081,10087,10089,10090,10096,10101,10102,
10107,10108,10109,10110,10111,10115,10116,10118,10135,10074,10176}.
* gnu/packages/java.scm (icedtea-7): Update to 2.6.11.
2017-08-19 18:50:01 -04:00
7b87132f6e
gnu: libreoffice: Update to 5.3.5.2.
...
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.3.5.2.
2017-08-19 22:46:03 +02:00
128c9b9269
gnu: perl-www-mechanize: Update source uri.
...
* gnu/packages/web.scm (perl-www-mechanize)[source]: Update to new uri.
2017-08-19 21:52:22 +03:00
7eb09e39ed
gnu: perl-net-server: Update to 2.009.
...
* gnu/packages/web.scm (perl-net-server): Update to 2.009.
2017-08-19 16:43:38 +02:00
68d5906c06
gnu: perl-www-mechanize: Update to 1.86.
...
* gnu/packages/web.scm (perl-www-mechanize): Update to 1.86.
[native-inputs]: Add PERL-TEST-DEEP, PERL-TEST-FATAL, PERL-TEST-OUTPUT and
PERL-TEST-WARNINGS.
[propagated-inputs]: Add PERL-HTML-TREE.
2017-08-19 16:43:37 +02:00
f87c1107d6
gnu: perl: Work around more "dotless @INC" build issues.
...
* gnu/packages/perl.scm (perl-hash-fieldhash,
perl-string-camelcase)[arguments]: Add 'set-perl-search-path' phase.
2017-08-19 16:43:37 +02:00
1cd5f1776d
gnu: perl-moosex-types-datetime: Update to 0.13.
...
* gnu/packages/perl.scm (perl-moosex-types-datetime): Update to 0.13.
2017-08-19 16:43:37 +02:00
55cca6ac61
gnu: perl-plack-middleware-reverseproxy: Provide Module::Install.
...
* gnu/packages/web.scm (perl-plack-middleware-reverseproxy)[native-inputs]:
Add PERL-MODULE-INSTALL.
2017-08-19 16:43:37 +02:00
e121be1e15
gnu: python-netaddr: Update to 0.7.19.
...
* gnu/packages/python.scm (python-netaddr): Update to 0.7.19.
2017-08-19 02:17:43 +02:00
b7585ca3b9
gnu: lz4: Update to 1.8.0.
...
* gnu/packages/compression.scm (lz4): Update to 1.8.0. Fix typo in comment.
[source]: Remove patch.
* gnu/packages/patches/lz4-fix-test-failures.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-19 02:17:42 +02:00
00d9124d40
gnu: lz4: Use recommended home page.
...
* gnu/packages/compression.scm (lz4)[home-page]: Use lz4.org.
2017-08-19 02:17:42 +02:00
865aacc9fa
gnu: Remove libgames-support.
...
It was simply the old name (and version) of libgnome-games-support.
* gnu/packages/gnome.scm (libgames-support): Remove variable. Move the
inherited fields...
(libgnome-games-support): ...to here.
2017-08-19 02:17:41 +02:00
d9f15d7e48
gnu: newsbeuter: Fix CVE-2017-12904.
...
* gnu/packages/patches/newsbeuter-CVE-2017-12904.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/syndication.scm (newsbeuter)[source]: Use it.
2017-08-18 17:24:47 -04:00
8c0c0c4def
gnu: python-pygit2: Update to 0.26.0.
...
* gnu/packages/python.scm (python-pygit2): Update to 0.26.0.
* gnu/packages/patches/python-pygit2-disable-network-tests.patch: Skip one
more test. Use unittest.skipIf instead of deleting sections.
2017-08-18 21:33:31 +02:00
1f9c2351d7
gnu: gnome-shell: Update to 3.24.3.
...
* gnu/packages/gnome.scm (gnome-shell): Update to 3.24.3.
2017-08-18 14:55:01 +02:00
cd5db77151
gnu: gnome-control-center: Update to 3.24.3.
...
* gnu/packages/gnome.scm (gnome-control-center): Update to 3.24.3.
2017-08-18 14:55:01 +02:00
d95d6d931e
gnu: gnome-keyring: Update to 3.20.1.
...
* gnu/packages/gnome.scm (gnome-keyring): Update to 3.20.1.
2017-08-18 14:55:00 +02:00
32d00d78dc
gnu: libgnome-games-support: Update to 1.2.2.
...
* gnu/packages/gnome.scm (libgnome-games-support): Update to 1.2.2.
2017-08-18 14:55:00 +02:00
9d086c075d
gnu: gjs: Update to 1.48.6.
...
* gnu/packages/gnome.scm (gjs): Update to 1.48.6.
2017-08-18 14:55:00 +02:00
69d0674830
gnu: shotwell: Update to 0.26.3.
...
* gnu/packages/gnome.scm (shotwell): Update to 0.26.3.
2017-08-18 14:54:59 +02:00
7c94a3599e
gnu: totem-pl-parser: Update to 3.10.8.
...
* gnu/packages/gnome.scm (totem-pl-parser): Update to 3.10.8.
2017-08-18 14:54:59 +02:00
94793c1d0a
gnu: perl-crypt-openssl-bignum: Update to 0.08.
...
* gnu/packages/tls.scm (perl-crypt-openssl-bignum): Update to 0.08.
2017-08-18 14:54:59 +02:00
598b5481a4
gnu: freerdp: Update inputs.
...
* gnu/packages/rdesktop.scm (freerdp) [native-inputs]: Add libxslt, libxml2
and docbook-xsl.
[inputs]: Add libjpeg, remove gstreamer, gst-plugins-base, libxml2 and
libxslt.
[arguments]: Enable features JPEG and SSE2 (on x86_64), and set up
docbook-xsl.
2017-08-18 14:52:35 +02:00
cc81f1c349
gnu: freerdp: Revert to version 1.1.
...
* gnu/packages/rdesktop.scm (freerdp) [version, source]: Revert to upstream
branch 1.1. [inputs]: Use ffmpeg-2.8.
* gnu/packages/gnome.scm (vinagre): Add patches required to build against
freerdp branch 1.1.
* gnu/packages/patches/vinagre-revert-1.patch,
gnu/packages/patches/vinagre-revert-2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2017-08-18 14:52:35 +02:00
c5a856d551
gnu: xf86-video-siliconmotion: Fix building on aarch64.
...
* gnu/packages/xorg.scm (xf86-video-siliconmotion)[source]: Add patch.
* gnu/packages/patches/xf86-video-siliconmotion-fix-ftbfs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-18 15:50:25 +03:00
d983a1cb8e
gnu: libksysguard: Update to 5.10.4.
...
* gnu/packages/kde.scm (libksysguard ): Update to 5.10.4.
2017-08-18 15:50:23 +03:00
de5a235c79
gnu: kde-framework: Update to 5.37.0.
...
* gnu/packages/kde-frameworks.scm (extra-cmake-modules, attica,
bluez-qt, breeze-icons, kapidox, karchive, kcodecs, kconfig,
kcoreaddons, kdbusaddons, kdnssd, kguiaddons, kil8n, kidletime,
kitemmodules, kplotting, ksyntaxhighlighting, kwayland, kwidgetsaddons,
kwindowsystem, modemmanager-qt, networkmanager-qt, oxygen-icons, solid,
sonnet, threadweaver, kauth, kcompletion, kcrash, kimageformats,
kjobwidgets, knotifications, kpackage, kpty, kunitconversion, baloo,
kactivities, kactivities-stats, kbookmarks, kcmutils, kconfigwidgets,
kdeclarative, kded, kdesignerplugin, kdesu, kemoticons, kglobalaccel,
kiconthemes, kinit, kio, knewstuff, knotifyconfig, kparts, kpeople,
krunner, kservice, ktexteditor, ktextwidgets, kwallet, kxmlgui,
kxmlrpcclient, plasma-framework, kde-framworkintegration,
kdelibs4support, khtml, kjs, kjsembed, kmediaplayer, kross): Update to 5.37.0.
(bluez-qt)[arguments]: Disable tests.
(kcodecs, khtml)[native-inputs]: Add gperf.
(ksyntaxhighlighting)[properties]: New field, add upstream-name.
(kimageformats, baloo)[arguments]: Add phase to disable failing test.
(krunner)[inputs]: Add kwindowsystem.
2017-08-18 15:50:22 +03:00
26ca43bb60
gnu: freeipmi: Update to 1.5.7.
...
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.5.7.
2017-08-18 15:50:20 +03:00
1286ff6161
gnu: giac-xcas: Update to 1.2.3-57.
...
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.3-57.
2017-08-18 14:31:06 +02:00
c5361b7c3d
gnu: Add rtl-sdr.
...
* gnu/packages/ham-radio.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ham-radio.scm (rtl-sdr): New variable.
2017-08-18 16:54:58 +05:30
2559401037
gnu: youtube-dl: Update to 2017.08.18.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.08.18.
2017-08-18 08:11:45 +02:00
2c7321eaa7
gnu: libconfuse: Update to 3.2.1.
...
* gnu/packages/wm.scm (libconfuse): Update to 3.2.1.
2017-08-18 08:11:45 +02:00
623cc34cd2
gnu: rpm: Update to 4.13.0.1.
...
* gnu/packages/package-management.scm (rpm): Update to 4.13.0.1
[source]: Remove patch. Use 'version-major+minor' for url.
* gnu/packages/patches/rpm-CVE-2014-8118.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-17 21:39:18 -05:00
52d445f130
gnu: Add rss-bridge.
...
* gnu/packages/web.scm (rss-bridge): New variable.
2017-08-18 07:18:04 +05:30
961012a0a0
gnu: Add missing import.
...
This is a followup to d016b60fa3
2017-08-18 00:48:25 +02:00
a099570249
gnu: openmpi: Add RDMA and libfabric support.
...
* gnu/packages/mpi.scm (openmpi)[inputs]: Add rdma-core, libfabric.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-18 00:36:28 +02:00
ae5947b0ef
gnu: Add libfabric.
...
* gnu/packages/linux.scm (libfabric): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-18 00:36:28 +02:00
3eb7c00038
gnu: libnl: Add "python2" and "python3" outputs.
...
* gnu/packages/linux.scm (libnl)[native-inputs]: Add SWIG and PKG-CONFIG.
[inputs]: Add PYTHON-2 and PYTHON-3.
[outputs]: Add python2, python3.
[arguments]: Add 'install-python' phase.
Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2017-08-18 00:36:27 +02:00
d80a47f2f5
gnu: libnl: Add "doc" output.
...
* gnu/packages/linux.scm (libnl)[native-inputs]: Add doc origin.
[outputs]: New field.
[arguments]: Add 'install-doc' phase. New field.
Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2017-08-18 00:36:27 +02:00
d016b60fa3
gnu: wireshark: Update to 2.4.0.
...
* gnu/packages/networking.scm (wireshark): Update to 2.4.0. Add "libssh",
"libxml2", "qtbase" and "qttools" as inputs. Remove unused "bison", "flex"
and "gtk+" inputs.
2017-08-18 00:17:24 +02:00
9fa0c0e6fa
gnu: libmspack: Update to 0.6 [fixes CVE-2017-{6419,11423}].
...
* gnu/packages/compression.scm (libmspack): Update to 0.6.
2017-08-17 22:32:51 +02:00
2d72ddf529
gnu: linux-libre: Update to 4.12.8.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.8.
(%linux-libre-hash): Update hash.
2017-08-17 14:41:18 -04:00
1e070766c0
gnu: linux-libre@4.9: Update to 4.9.44.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.44.
2017-08-17 14:40:29 -04:00
821f18719d
gnu: linux-libre@4.4: Update to 4.4.83.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.83.
2017-08-17 14:39:31 -04:00
f2d7a492df
web: Check for the existance of SSL related files.
...
This adds back the previous behaviour of the nginx-service-type, where the
service would check at the time when the configuration is generated if the SSL
certificate and certificate key file exists.
* gnu/services/web.scm (emit-nginx-server-config): Add back check for SSL
related files.
2017-08-17 18:32:27 +01:00
c9aa261be4
gnu: services: Nginx configs can reference store
...
* gnu/services/web.scm (config-domain-strings, config-index-strings): Emit
lists instead of strings.
(emit-nginx-location-config, emit-nginx-server-config)
(emit-nginx-upstream-config): Rename from nginx-location-config,
default-nginx-server-config, and nginx-upstream-config. Emit lists instead of
strings.
(flatten): New helper.
(default-nginx-config): Use flatten helper to write nginx conf. This allows
location configs to reference store values.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-08-17 18:32:23 +01:00
e9a599cdce
gnu: Add OpenMW.
...
* gnu/packages/game-development.scm (openmw): New variable.
2017-08-17 19:40:33 +03:00
42d0d13de8
gnu: Add mygui.
...
* gnu/packages/game-development.scm (mygui): New variable.
2017-08-17 19:35:28 +03:00
dd75a9a22c
gnu: Add ogre.
...
* gnu/packages/graphics.scm (ogre): New variable.
2017-08-17 19:11:35 +03:00
bf3fa99654
gnu: Add r-methylkit.
...
* gnu/packages/bioinformatics.scm (r-methylkit): New variable.
2017-08-17 18:00:17 +02:00
8a39e4a553
gnu: sassc: Update to 3.4.5.
...
* gnu/packages/web.scm (sassc): Update to 3.4.5.
[arguments]: Add PREFIX to make-flags, disable tests, remove custom install
phase.
2017-08-17 18:00:17 +02:00
f30ff28b96
gnu: mariadb: Update to 10.1.26 [fixes CVE-2017-{3636,3641,3653}].
...
* gnu/packages/databases.scm (mariadb): Update to 10.1.26.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-08-17 11:40:29 -04:00
05e8a3ef0f
gnu: Add r-ksamples.
...
* gnu/packages/cran.scm (r-ksamples): New variable.
2017-08-17 17:26:13 +02:00
abcb849405
gnu: Add r-suppdists.
...
* gnu/packages/cran.scm (r-suppdists): New variable.
2017-08-17 17:26:12 +02:00
8d22007380
gnu: Add r-energy.
...
* gnu/packages/cran.scm (r-energy): New variable.
2017-08-17 17:26:12 +02:00
6b4a9aec23
gnu: Add r-fitdistrplus.
...
* gnu/packages/cran.scm (r-fitdistrplus): New variable.
2017-08-17 17:26:12 +02:00
521e0703d8
gnu: Add r-limsolve.
...
* gnu/packages/cran.scm (r-limsolve): New variable.
2017-08-17 17:26:12 +02:00
a3e36d3772
gnu: Add r-lpsolve.
...
* gnu/packages/cran.scm (r-lpsolve): New variable.
2017-08-17 17:26:12 +02:00
212f612040
gnu: Add r-qvalue.
...
* gnu/packages/bioinformatics.scm (r-qvalue): New variable.
2017-08-17 17:26:12 +02:00
d4a1e918cb
gnu: Add r-fastseg.
...
* gnu/packages/bioinformatics.scm (r-fastseg): New variable.
2017-08-17 17:26:11 +02:00
b31e4a9693
gnu: Add r-emdbook.
...
* gnu/packages/cran.scm (r-emdbook): New variable.
2017-08-17 17:26:11 +02:00
97cb349dc1
gnu: r-trimcluster: Update license.
...
* gnu/packages/statistics.scm (r-trimcluster)[license]: Also specify GPLv3+.
2017-08-17 17:26:11 +02:00
8c72b83096
gnu: Add r-bbmle.
...
* gnu/packages/cran.scm (r-bbmle): New variable.
2017-08-17 17:26:11 +02:00
d6b156dc04
gnu: Add r-inline.
...
* gnu/packages/cran.scm (r-inline): New variable.
2017-08-17 17:26:11 +02:00
062b6dbd25
gnu: Add r-lmtest.
...
* gnu/packages/cran.scm (r-lmtest): New variable.
2017-08-17 17:26:11 +02:00
58db98c9f2
gnu: Add r-extremes.
...
* gnu/packages/cran.scm (r-extremes): New variable.
2017-08-17 17:26:10 +02:00
28476b4bc0
gnu: Add r-distillery.
...
* gnu/packages/cran.scm (r-distillery): New variable.
2017-08-17 17:26:10 +02:00
6427e62005
gnu: Add r-lmoments.
...
* gnu/packages/cran.scm (r-lmoments): New variable.
2017-08-17 17:26:10 +02:00
e389d10f55
gnu: Add r-rmtstat.
...
* gnu/packages/cran.scm (r-rmtstat): New variable.
2017-08-17 17:26:10 +02:00
b723dedf81
gnu: Add r-rook.
...
* gnu/packages/web.scm (r-rook): New variable.
2017-08-17 17:26:10 +02:00
bc0081e76f
gnu: Add r-sp.
...
* gnu/packages/cran.scm (r-sp): New variable.
2017-08-17 17:26:10 +02:00
3349faecf5
gnu: Add r-proxy.
...
* gnu/packages/cran.scm (r-proxy): New variable.
2017-08-17 17:26:10 +02:00
ac8402072b
gnu: Add r-ggally.
...
* gnu/packages/cran.scm (r-ggally): New variable.
2017-08-17 17:26:09 +02:00
c9c6f4b543
gnu: Add r-progress.
...
* gnu/packages/cran.scm (r-progress): New variable.
2017-08-17 17:26:09 +02:00
71be51d531
gnu: Add r-reshape.
...
* gnu/packages/cran.scm (r-reshape): New variable.
2017-08-17 17:26:09 +02:00
18a16ceb7c
gnu: Add r-prettyunits.
...
* gnu/packages/cran.scm (r-prettyunits): New variable.
2017-08-17 17:26:09 +02:00
49c9c29790
gnu: Add r-ffbase.
...
* gnu/packages/cran.scm (r-ffbase): New variable.
2017-08-17 17:26:09 +02:00
a7f0faa204
gnu: Add r-ff.
...
* gnu/packages/cran.scm (r-ff): New variable.
2017-08-17 17:26:09 +02:00
f2e974e1a2
gnu: Add r-fastmatch.
...
* gnu/packages/cran.scm (r-fastmatch): New variable.
2017-08-17 17:26:09 +02:00
e0268ff2e4
gnu: Add r-getoptlong.
...
* gnu/packages/cran.scm (r-getoptlong): New variable.
2017-08-17 17:26:08 +02:00
d3c67e1b45
gnu: Add r-dendextend.
...
* gnu/packages/cran.scm (r-dendextend): New variable.
2017-08-17 17:26:08 +02:00
0548660420
gnu: Add r-compare.
...
* gnu/packages/cran.scm (r-compare): New variable.
2017-08-17 17:26:08 +02:00
eb60149eee
gnu: Add r-png.
...
* gnu/packages/image.scm (r-png): New variable.
2017-08-17 17:26:08 +02:00
5cc79c9c50
gnu: Add r-powerlaw.
...
* gnu/packages/cran.scm (r-powerlaw): New variable.
2017-08-17 17:25:47 +02:00
2856369fad
gnu: Add r-circlize.
...
* gnu/packages/cran.scm (r-circlize): New variable.
2017-08-17 17:25:47 +02:00
4847a62ea9
gnu: Add r-globaloptions.
...
* gnu/packages/cran.scm (r-globaloptions): New variable.
2017-08-17 17:25:47 +02:00
2bdb5c3f78
gnu: Add r-shape.
...
* gnu/packages/cran.scm (r-shape): New variable.
2017-08-17 17:25:47 +02:00
c69d27db57
gnu: Add r-calibrate.
...
* gnu/packages/cran.scm (r-calibrate): New variable.
2017-08-17 17:25:47 +02:00
33ce12e293
gnu: Add r-auc.
...
* gnu/packages/cran.scm (r-auc): New variable.
2017-08-17 17:25:47 +02:00
4a007ffafe
gnu: Add r-annotationhub.
...
* gnu/packages/bioinformatics.scm (r-annotationhub): New variable.
2017-08-17 17:25:47 +02:00
5f96f30f5d
gnu: Add r-interactivedisplaybase.
...
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): New variable.
2017-08-17 17:25:46 +02:00
a71fd67175
gnu: american-fuzzy-lop: Update to 2.49b.
...
* gnu/packages/debug.scm (american-fuzzy-lop): Update to 2.49b.
2017-08-17 18:17:00 +03:00
aacefef222
gnu: american-fuzzy-lop: Add support for non-Intel architectures.
...
* gnu/packages/debug.scm (americal-fuzzy-lop): Add qemu target for
non-Intel targets.
[arguments]: On non-Intel systems, add phase to disable non-Intel
architecture warning and remove incompatible binaries.
2017-08-17 18:16:57 +03:00
721e1987d0
gnu: Add mgba.
...
* gnu/packages/games.scm (mgba): New public variable.
2017-08-17 10:56:04 +02:00
a6d05444ab
gnu: cuirass: Update to 0.0.1-7.6f85bc0.
...
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-7.6f85bc0.
[arguments]: Add guile-git and guile-bytestructures to the load path.
[inputs]: Remove git, add guile-git and guile-bytestructures.
2017-08-17 09:12:46 +02:00
e3b861ce38
gnu: python-cython: Update to 0.26.
...
* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.26.
[source]: Remove patch.
* gnu/packages/patches/python-cython-fix-tests-32bit.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-17 06:46:06 +03:00
d6ef422fe7
gnu: Add fbreader.
...
* gnu/packages/ebook.scm (fbreader): New variable.
2017-08-17 02:00:51 +02:00
84a52639c9
gnu: Add liblinebreak.
...
* gnu/packages/ebook.scm (liblinebreak): New variable.
2017-08-17 01:56:38 +02:00
f73f1f0769
gnu: python-cryptography-vectors: Update to 2.0.3.
...
* gnu/packages/python.scm (python-cryptography-vectors): Update to 2.0.3.
2017-08-16 22:35:11 +02:00
f37995fa20
gnu: python-cryptography: Update to 2.0.3.
...
* gnu/packages/python.scm (python-cryptography): Update to 2.0.3.
2017-08-16 22:35:10 +02:00
f886e7cab1
gnu: limnoria: Update to 2017.08.03.
...
* gnu/packages/irc.scm (limnoria): Update to 2017.08.03.
2017-08-16 22:35:10 +02:00
e2a4c13023
gnu: cbatticon: Update to 1.6.6.
...
* gnu/packages/admin.scm (cbatticon): Update to 1.6.6.
2017-08-16 22:35:10 +02:00
f207984985
gnu: Add gpick.
...
* gnu/packages/image.scm (gpick): New variable.
2017-08-16 21:37:33 +03:00
d0b13d7b9b
gnu: fossil: Update to 2.2.
...
* gnu/packages/version-control.scm (fossil): Update to 2.2.
[source]: Add uri for older versions.
[arguments]: Enable previously disabled test.
2017-08-16 21:37:32 +03:00
ab1bd285db
gnu: connman: Update to 1.35.
...
* gnu/packages/connman.scm (connman): Update to 1.35.
2017-08-16 21:37:29 +03:00
e664200c0c
gnu: Add ltris.
...
* gnu/packages/games.scm (ltris): New variable.
2017-08-16 11:28:12 -04:00
af4db693db
gnu: Add ghc-gitrev.
...
* gnu/packages/haskell.scm (ghc-gitrev): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
e0ca14c7a8
gnu: Add ghc-geniplate-mirror.
...
* gnu/packages/haskell.scm (ghc-geniplate-mirror): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
298af2a8da
gnu: Add ghc-monadplus.
...
* gnu/packages/haskell.scm (ghc-monadplus): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
005a08e3dc
gnu: Add ghc-fail.
...
* gnu/packages/haskell.scm (ghc-fail): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
1eced2a7a8
gnu: Add ghc-edisoncore.
...
* gnu/packages/haskell.scm (ghc-edisoncore): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
212ae09541
gnu: Add ghc-edisonapi.
...
* gnu/packages/haskell.scm (ghc-edisonapi): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
a623fd7fed
gnu: Add ghc-murmur-hash.
...
* gnu/packages/haskell.scm (ghc-murmur-hash): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:38 +02:00
ca48a34594
gnu: Add ghc-data-hash.
...
* gnu/packages/haskell.scm (ghc-data-hash): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:38 +02:00
adcb30642c
gnu: pspp: Update to 0.11.0.
...
This fixes CVE-2017-10791, CVE-2017-10792.
* gnu/packages/statistics.scm (pspp): Update to 0.11.0.
2017-08-16 17:57:40 +03:00
96f23b62e0
gnu: Add ghc-equivalence.
...
* gnu/packages/haskell.scm (ghc-equivalence): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:13 +02:00
3f8b8e731c
gnu: Add ghc-boxes.
...
* gnu/packages/haskell.scm (ghc-boxes): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:13 +02:00
be04f8020a
gnu: Add ghc-edit-distance.
...
* gnu/packages/haskell.scm (ghc-edit-distance): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:13 +02:00
867ed9776c
gnu: Add ghc-stmonadtrans.
...
* gnu/packages/haskell.scm (ghc-stmonadtrans): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:12 +02:00
f99a57dc28
gnu: Add ghc-strict.
...
* gnu/packages/haskell.scm (ghc-strict): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:12 +02:00
c12562e1e8
gnu: cpphs: Update to 1.20.8.
...
* gnu/packages/haskell.scm (cpphs): Update to 1.20.8.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:08 +02:00
2f7966c8e2
gnu: font-google-noto: Use font-build-system.
...
* gnu/packages/fonts.scm (font-google-noto)[build-system]: Use
font-build-system.
[source]: Use url-fetch/zipbomb.
[arguments]: Remove it.
[native-inputs]: Remove it.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:18:50 +02:00
d534f3a4d3
gnu: r-mzr: Fix building on aarch64 and armhf.
...
* gnu/packages/bioinformatics.scm (r-mzr)[inputs]: Add boost.
2017-08-16 12:36:25 +03:00
953a12fa9b
gnu: hdf4: Fix building on aarch64.
...
* gnu/packages/maths.scm (hdf4)[arguments]: Add a phase to improve
detection and support for aarch64-linux.
2017-08-16 09:33:11 +03:00
8343d373d5
gnu: cgit: Don't build cgit's special 'git:src' input.
...
This special version of Git is only used within the build process of
cgit. We don't need to build it otherwise, so the package is removed
with this commit.
* gnu/packages/version-control.scm (cgit)[inputs]: Replace the git@2.10
package with an origin reference of the source code.
(git@2.10 ): Remove variable.
2017-08-15 17:59:22 -04:00
6230e155af
gnu: Fix memcached service startup.
...
Memcached changes to the memcached user from root before writing the PID
file. This means that it must be able to write the PID file as the memcached
user.
To make this work, create the /var/run/memcached directory when the service
starts, make it owned by memcached, and change memcached to write the PID file
to /var/run/memcached/pid.
This wasn't picked up by the system test as the "service running" part was too
permissive, and only failed on an error. Instead, test the response from
calling start-service and check that the PID is a number.
* gnu/services/databases.scm (memcached-activation): New variable.
(memcached-shepherd-service): Change PID file location.
(memcached-service-type): Extend the activation-service-type.
* gnu/tests/databases.scm (run-memcached-test)[test]: Change the "service
running" test to check the response from the shepherd.
2017-08-15 22:24:15 +01:00
2434f5cedf
gnu: Add dssi.
...
* gnu/packages/music.scm (dssi): New variable.
2017-08-15 20:58:03 +02:00
425d66f7a7
gnu: Add emacs-highlight-symbol.
...
* gnu/packages/emacs.scm (emacs-highlight-symbol): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-15 20:52:58 +02:00
be69176bbd
gnu: fish-guix: Use new download URL.
...
* gnu/packages/shells.scm (fish-guix)[source]: Adjust the download URL.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-15 20:41:23 +02:00
dca82aefbc
gnu: p11-kit: Update to 0.23.8.
...
* gnu/packages/tls.scm (p11-kit): Update to 0.23.8.
2017-08-15 20:38:02 +02:00
6550e5ad64
gnu: signify: Update to 22.
...
* gnu/packages/crypto.scm (signify): Update to 22.
2017-08-15 13:27:30 -04:00
06f31e50b1
gnu: diamond: Update to 0.9.10.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.10.
2017-08-15 18:49:33 +10:00
3837108e40
gnu: bcftools: Fix building on aarch64.
...
* gnu/packages/patches/bcftools-regidx-unsigned-char.patch: New file.
* gnu/packages/bioinformatics.scm (bcftools)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-15 10:31:20 +03:00
09ec5a0f0c
Merge branch 'master' into core-updates
2017-08-15 03:10:14 -04:00
2d430f2923
Revert "gnu: pspp: Update to 0.11.0."
...
This FTBFS on x86_64 and i686.
This reverts commit f4c808df5b
2017-08-15 10:03:40 +03:00
14f366e58d
gnu: youtube-dl: Update to 2017.08.13.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.08.13.
2017-08-15 01:42:49 +02:00
f28fea1ca7
gnu: e2fsprogs: Update to 1.43.5.
...
* gnu/packages/patches/e2fsprogs-32bit-quota-warnings.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/linux.scm (e2fsprogs): Update to 1.43.5.
[source]: Use patch.
2017-08-15 01:08:01 +02:00
15428168ea
gnu: cvs: Fix CVE-2017-12836.
...
* gnu/packages/patches/cvs-2017-12836.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/version-control.scm (cvs)[source]: Use it.
2017-08-14 15:55:31 -04:00
36bfcf7e3a
gnu: git@2.10: Update to 2.10.4 [fixes CVE-2017-1000117].
...
...also disable tests, since they broke after c9f4f56b24git@2.10 ): Update to 2.10.4.
[arguments]: New field.
2017-08-14 21:44:24 +02:00
2bccf1c0ec
gnu: gcc@7: Update to 7.2.0.
...
* gnu/packages/gcc.scm (gcc@7): Update to 7.2.0.
[source]: Switch to xz compression.
2017-08-14 22:30:07 +03:00
a547a6d560
Revert "gnu: e2fsprogs: Update to 1.43.5."
...
Fails to build on i686:
<https://lists.gnu.org/archive/html/guix-devel/2017-08/msg00118.html >
This reverts commit 3ddaa7922b
2017-08-14 21:22:12 +02:00
1faf081b47
gnu: milkytracker: Update to 1.01.00.
...
* gnu/packages/music.scm (milkytracker): Update to 1.01.00.
2017-08-14 14:26:15 -04:00
9634804890
gnu: Add bismark.
...
* gnu/packages/bioinformatics.scm (bismark): New variable.
2017-08-14 12:00:56 +02:00
86763fdd70
gnu: Add r-dexseq.
...
* gnu/packages/bioinformatics.scm (r-dexseq): New variable.
2017-08-14 12:00:51 +02:00
233f4f43bf
gnu: Add perl-math-random-secure.
...
* gnu/packages/crypto.scm (perl-math-random-secure): New variable.
2017-08-14 11:50:42 +02:00
2023b79f59
gnu: Add perl-crypt-random-source.
...
* gnu/packages/crypto.scm (perl-crypt-random-source): New variable.
2017-08-14 11:50:13 +02:00
2bdc07c2a5
gnu: Add perl-type-tiny.
...
* gnu/packages/perl.scm (perl-type-tiny): New variable.
2017-08-14 11:46:23 +02:00
a0eb3104a9
gnu: Add perl-ref-util-xs.
...
* gnu/packages/perl.scm (perl-ref-util-xs): New variable.
2017-08-14 11:46:14 +02:00
44d37e43fe
gnu: Add perl-regexp-util.
...
* gnu/packages/perl.scm (perl-regexp-util): New variable.
2017-08-14 11:46:04 +02:00
413dd21084
gnu: Add perl-type-tie.
...
* gnu/packages/perl.scm (perl-type-tie): New variable.
2017-08-14 11:45:56 +02:00
649238cbc7
gnu: Add perl-math-random-isaac.
...
* gnu/packages/crypto.scm (perl-math-random-isaac): New variable.
2017-08-14 11:45:20 +02:00
d96e162aa9
gnu: Add perl-math-random-isaac-xs.
...
* gnu/packages/crypto.scm (perl-math-random-isaac-xs): New variable.
2017-08-14 11:44:15 +02:00
2fa2179135
gnu: Add perl-hash-fieldhash.
...
* gnu/packages/perl.scm (perl-hash-fieldhash): New variable.
2017-08-14 11:37:08 +02:00
28fd275caf
gnu: arandr: Use absolute path for xrandr.
...
* gnu/packages/xdisorg.scm (arandr)[arguments]: Add configure phase.
2017-08-14 10:01:40 +02:00
9031d26aeb
gnu: linux-libre: Update to 4.12.7.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.7.
(%linux-libre-hash): Update hash.
2017-08-14 03:33:09 -04:00
e96b4378a2
gnu: linux-libre@4.9: Update to 4.9.43.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.43.
2017-08-14 03:32:26 -04:00
7aee6a311b
gnu: linux-libre@4.4: Update to 4.4.82.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.82.
2017-08-14 03:31:29 -04:00
3bfa7af417
gnu: libreoffice: Install .desktop files.
...
* gnu/packages/libreoffice.scm (libreoffice): Add phase to install .desktop
files to $out/share so that LibreOffice will show up in Gnome/KDE/etc and so
that it is associated with the various MIME types of interest.
2017-08-14 09:11:22 +02:00
ac2ddcc66f
gnu: wxmaxima: Update to 17.05.1.
...
* gnu/packages/maths.scm (wxmaxima): Update to 17.05.1.
[arguments]: Put "autoconf" phase after the "unpack" phase. Fix
indentation.
2017-08-13 18:18:27 -04:00
be6e2c3018
gnu: Update open-adventure to d43854f0f6bb8e9eea7fbce80348150e7e7fc34d.
...
* gnu/packages/games.scm (open-adventure): Update to
d43854f0f6bb8e9eea7fbce80348150e7e7fc34d.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-08-13 15:39:47 -04:00
05af41a181
gnu: linenoise: Update to commit 2105ce445821381cf1bca87b6d386d4ea88ee20d.
...
* gnu/packages/shells.scm (linenoise): Update to commit
2105ce445821381cf1bca87b6d386d4ea88ee20d. Fix indentation.
[source]: change to git.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-08-13 15:29:45 -04:00
f152208b0d
gnu: qemu: Fix CVE-2017-{10664,10806,10911,11434}.
...
* gnu/packages/patches/qemu-CVE-2017-10664.patch,
gnu/packages/patches/qemu-CVE-2017-10806.patch,
gnu/packages/patches/qemu-CVE-2017-10911.patch,
gnu/packages/patches/qemu-CVE-2017-11434.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-13 18:28:27 +02:00
d5daf6fbe0
gnu: curl: Fix i686 test failure.
...
* gnu/packages/patches/curl-bounds-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/curl.scm (curl-7.55.0)[source]: Use it.
2017-08-13 16:46:41 +02:00
9766082045
gnu: imagemagick: Update to 6.9.9-7.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-7.
2017-08-13 15:14:03 +02:00
f7e8302b4e
gnu: Add emacs-nix-mode.
...
* gnu/packages/emacs.scm (emacs-nix-mode): New variable.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-13 13:20:30 +05:30
f4c808df5b
gnu: pspp: Update to 0.11.0.
...
This fixes CVE-2017-10791, CVE-2017-10792.
* gnu/packages/statistics.scm (pspp): Update to 0.11.0.
2017-08-13 10:16:17 +03:00
06465d2ba4
gnu: Add mpd service.
...
* doc/guix.texi: Add documentation.
* gnu/services/audio.scm (<mpd-configuration>): New record type.
(mpd-service-type): New service type.
* gnu/tests/audio.scm: New file.
* gnu/local.mk: Add new files.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-08-13 07:36:32 +01:00
c0761f2e7e
gnu: moreutils: Add more inputs to moreutils.
...
The included ts command requires the Time::Duration and Date::Parse perl
modules for the -r option.
* gnu/packages/moreutils.scm (moreutils)[inputs]: Add perl-timedate and
perl-time-duration.
[arguments]: Wrap ts with PERL5LIB.
2017-08-12 22:09:50 +01:00
861fd04baf
gnu: efl: Don't include gtk+@3 in enclosure.
...
* gnu/packages/enlightenment.scm (efl)[propagated-inputs]: Replace
libinput with libinput-minimal.
2017-08-12 23:10:38 +03:00
9be481f8b9
gnu: efl: Update to 1.20.2.
...
* gnu/packages/enlightenment.scm (efl): Update to 1.20.2.
2017-08-12 23:10:36 +03:00
f814379463
gnu: linux-libre: Update to 4.12.6.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.6.
(%linux-libre-hash): Update hash.
2017-08-12 15:52:29 -04:00
5a8fc7de66
gnu: linux-libre@4.9: Update to 4.9.42.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.42.
2017-08-12 15:51:47 -04:00
7d7c84a7bf
gnu: linux-libre@4.4: Update to 4.4.81.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.81.
2017-08-12 15:51:00 -04:00
462ae6f612
gnu: python-pylint: Use Python2 variant system.
...
* gnu/packages/python.scm (python-pylint): Use Python2 variant system.
(python2-pylint): Strip Python2 variant system.
2017-08-12 16:30:16 +02:00
bfcdf88760
gnu: catdoc: Fix CVE-2017-11110.
...
* gnu/packages/patches/catdoc-CVE-2017-11110.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/textutils.scm (catdoc)[source]: Use it.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-12 15:30:23 +02:00
3ddaa7922b
gnu: e2fsprogs: Update to 1.43.5.
...
* gnu/packages/linux.scm (e2fsprogs): Update to 1.43.5.
2017-08-12 14:07:41 +02:00
f1f2da6bce
gnu: feh: Update to 2.19.2.
...
* gnu/packages/image-viewers.scm (feh): Update to 2.19.2.
2017-08-12 13:59:14 +02:00
3f09b46d93
gnu: dub: Update to 1.4.1.
...
* gnu/packages/ldc.scm (dub): Update to 1.4.1.
2017-08-11 16:46:00 +02:00
f7fc9667b2
gnu: Add cloc.
...
* gnu/packages/code.scm (cloc): New public variable.
2017-08-11 10:38:30 +02:00
3785e42e52
Merge branch 'master' into core-updates
2017-08-11 03:49:24 -04:00
d373c16f33
gnu: imagemagick: Update to 6.9.9-5.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-5.
2017-08-10 20:12:47 -04:00
1c865bfce5
gnu: mksh: Update to 56.
...
* gnu/packages/shells.scm (mksh): Update to 56.
2017-08-11 01:02:12 +02:00
eec0c587af
gnu: ruby-debug-inspector: Update to 0.0.3.
...
* gnu/packages/ruby.scm (ruby-debug-inspector): Update to 0.0.3.
2017-08-11 00:21:00 +02:00
c3b36fa161
gnu: ruby-listen: Update to 3.1.5.
...
* gnu/packages/ruby.scm (ruby-listen): Update to 3.1.5.
2017-08-11 00:20:59 +02:00
98ff58a53d
gnu: ruby-introspection: Update to 0.0.4.
...
* gnu/packages/ruby.scm (ruby-introspection): Update to 0.0.4.
2017-08-11 00:20:59 +02:00
a88f24d860
gnu: ruby-simplecov-html: Update to 0.10.1.
...
* gnu/packages/ruby.scm (ruby-simplecov-html): Update to 0.10.1.
2017-08-11 00:20:58 +02:00
ba074a85d0
gnu: ruby-net-http-digest-auth: Update to 1.4.1.
...
* gnu/packages/ruby.scm (ruby-net-http-digest-auth): Update to 1.4.1.
2017-08-11 00:20:57 +02:00
12313cd071
gnu: ruby-nenv: Update to 0.3.0.
...
* gnu/packages/ruby.scm (ruby-nenv): Update to 0.3.0.
2017-08-11 00:20:57 +02:00
aeb4e61e75
gnu: ruby-rjb: Update to 1.5.5.
...
* gnu/packages/ruby.scm (ruby-rjb): Update to 1.5.5.
2017-08-11 00:20:56 +02:00
acbc506218
gnu: ruby-libxml: Update to 3.0.0.
...
* gnu/packages/ruby.scm (ruby-libxml): Update to 3.0.0.
2017-08-11 00:20:55 +02:00
6f9652b0a1
gnu: ruby-minitest-bacon: Update to 1.0.3.
...
* gnu/packages/ruby.scm (ruby-minitest-bacon): Update to 1.0.3.
2017-08-11 00:20:55 +02:00
fbefd6ffbf
gnu: ruby-tins: Update to 1.15.0.
...
* gnu/packages/ruby.scm (ruby-tins): Update to 1.15.0.
2017-08-11 00:20:54 +02:00
ceaff59ec7
gnu: ruby-git: Update to 1.3.0.
...
* gnu/packages/ruby.scm (ruby-git): Update to 1.3.0.
2017-08-11 00:20:53 +02:00
c9e261b7eb
gnu: ruby-minitest-bonus-assertions: Update to 3.0.
...
* gnu/packages/ruby.scm (ruby-minitest-bonus-assertions): Update to 3.0.
2017-08-11 00:20:52 +02:00
d21c6686d0
gnu: ruby-minitest-hooks: Update to 1.4.1.
...
* gnu/packages/ruby.scm (ruby-minitest-hooks): Update to 1.4.1.
2017-08-11 00:20:52 +02:00
d74d96e466
gnu: ruby-test-unit: Update to 3.2.5.
...
* gnu/packages/ruby.scm (ruby-test-unit): Update to 3.2.5.
2017-08-11 00:20:51 +02:00
2e8cd8624d
gnu: ruby-thor: Update to 0.19.4.
...
* gnu/packages/ruby.scm (ruby-thor): Update to 0.19.4.
2017-08-11 00:20:50 +02:00
1d60c436aa
gnu: ruby-packnga: Update to 1.0.4.
...
* gnu/packages/ruby.scm (ruby-packnga): Update to 1.0.4.
2017-08-11 00:20:50 +02:00
e32dfb7405
gnu: ruby-lumberjack: Update to 1.0.12.
...
* gnu/packages/ruby.scm (ruby-lumberjack): Update to 1.0.12.
2017-08-11 00:20:49 +02:00
185ea4465d
gnu: ruby-net-http-persistent: Update to 3.0.0.
...
* gnu/packages/ruby.scm (ruby-net-http-persistent): Update to 3.0.0.
2017-08-11 00:20:48 +02:00
04de0cb5a0
gnu: ruby-mail: Update to 2.6.6.
...
* gnu/packages/ruby.scm (ruby-mail): Update to 2.6.6.
2017-08-11 00:20:48 +02:00
263c0dbf00
gnu: ruby-ox: Update to 2.6.0.
...
* gnu/packages/ruby.scm (ruby-ox): Update to 2.6.0.
2017-08-11 00:20:47 +02:00
2a91494ed1
gnu: ruby-redcloth: Update to 4.3.2.
...
* gnu/packages/ruby.scm (ruby-redcloth): Update to 4.3.2.
2017-08-11 00:20:46 +02:00
a3179a7338
gnu: ruby-connection-pool: Update to 2.2.1.
...
* gnu/packages/ruby.scm (ruby-connection-pool): Update to 2.2.1.
2017-08-11 00:20:46 +02:00
56822223c1
gnu: ruby-fivemat: Update to 1.3.5.
...
* gnu/packages/ruby.scm (ruby-fivemat): Update to 1.3.5.
2017-08-11 00:20:45 +02:00
8d10918a43
gnu: ruby-daemons: Update to 1.2.4.
...
* gnu/packages/ruby.scm (ruby-daemons): Update to 1.2.4.
2017-08-11 00:20:44 +02:00
e2fcef3913
gnu: ruby-diff-lcs: Update to 1.3.
...
* gnu/packages/ruby.scm (ruby-diff-lcs): Update to 1.3.
2017-08-11 00:20:44 +02:00
313dd5ddc0
gnu: ruby-thread-safe: Update to 0.3.6.
...
* gnu/packages/ruby.scm (ruby-thread-safe): Update to 0.3.6.
2017-08-11 00:20:43 +02:00
884a80dd0a
gnu: ruby-pkg-config: Update to 1.2.5.
...
* gnu/packages/ruby.scm (ruby-pkg-config): Update to 1.2.5.
2017-08-11 00:20:43 +02:00
30caad5080
gnu: ruby-eventmachine: Update to 1.2.5.
...
* gnu/packages/ruby.scm (ruby-eventmachine): Update to 1.2.5.
2017-08-11 00:20:42 +02:00
f3a6311af4
gnu: ruby-term-ansicolor: Update to 1.6.0.
...
* gnu/packages/ruby.scm (ruby-term-ansicolor): Update to 1.6.0.
2017-08-11 00:20:41 +02:00
0cd7b8164d
gnu: ruby-rake-compiler: Update to 1.0.4.
...
* gnu/packages/ruby.scm (ruby-rake-compiler): Update to 1.0.4.
2017-08-11 00:20:40 +02:00
3b0e45c86d
gnu: ruby-useragent: Update to 0.16.8.
...
* gnu/packages/ruby.scm (ruby-useragent): Update to 0.16.8.
2017-08-11 00:20:40 +02:00
5620bd456f
gnu: ruby-domain-name: Update to 0.5.20170404.
...
* gnu/packages/ruby.scm (ruby-domain-name): Update to 0.5.20170404.
2017-08-11 00:20:39 +02:00
a7ca218cd5
gnu: ruby-notiffany: Update to 0.1.1.
...
* gnu/packages/ruby.scm (ruby-notiffany): Update to 0.1.1.
2017-08-11 00:20:39 +02:00
d5489a618d
gnu: ruby-byebug: Update to 9.0.6.
...
* gnu/packages/ruby.scm (ruby-byebug): Update to 9.0.6.
2017-08-11 00:20:38 +02:00
65a7f09ce0
gnu: ruby-sequel: Update to 4.49.0.
...
* gnu/packages/ruby.scm (ruby-sequel): Update to 4.49.0.
2017-08-11 00:20:38 +02:00
d1c1f36803
gnu: ruby-shoulda-matchers: Update to 3.1.2.
...
* gnu/packages/ruby.scm (ruby-shoulda-matchers): Update to 3.1.2.
2017-08-11 00:20:37 +02:00
8e5ff25042
gnu: ruby-arel: Update to 8.0.0.
...
* gnu/packages/ruby.scm (ruby-arel): Update to 8.0.0.
2017-08-11 00:20:37 +02:00
56ccada3c1
gnu: ruby-rb-fsevent: Update to 0.10.2.
...
* gnu/packages/ruby.scm (ruby-rb-fsevent): Update to 0.10.2.
2017-08-11 00:20:36 +02:00
cd698b6e20
gnu: ruby-utils: Update to 0.9.0.
...
* gnu/packages/ruby.scm (ruby-utils): Update to 0.9.0.
2017-08-11 00:20:35 +02:00
e322222ab4
gnu: ruby-tzinfo: Update to 1.2.3.
...
* gnu/packages/ruby.scm (ruby-tzinfo): Update to 1.2.3.
2017-08-11 00:20:35 +02:00
32bbfea811
gnu: ruby-rb-inotify: Update to 0.9.10.
...
* gnu/packages/ruby.scm (ruby-rb-inotify): Update to 0.9.10.
2017-08-11 00:20:34 +02:00
8929f0a481
gnu: ruby-gherkin: Update to 4.1.3.
...
* gnu/packages/ruby.scm (ruby-gherkin): Update to 4.1.3.
2017-08-11 00:20:33 +02:00
3d4a5eb555
gnu: ruby-timecop: Update to 0.9.1.
...
* gnu/packages/ruby.scm (ruby-timecop): Update to 0.9.1.
2017-08-11 00:20:33 +02:00
483846ac6f
gnu: ruby-minitest: Update to 5.10.3.
...
* gnu/packages/ruby.scm (ruby-minitest): Update to 5.10.3.
2017-08-11 00:20:32 +02:00
5ca48923f5
gnu: ruby-redcarpet: Update to 3.4.0.
...
* gnu/packages/ruby.scm (ruby-redcarpet): Update to 3.4.0.
2017-08-11 00:20:32 +02:00
dc97df2ef4
gnu: ruby-cucumber-core: Update to 2.0.0.
...
* gnu/packages/ruby.scm (ruby-cucumber-core): Update to 2.0.0.
2017-08-11 00:20:31 +02:00
ce5f523001
gnu: ruby-pg: Update to 0.21.0.
...
* gnu/packages/ruby.scm (ruby-pg): Update to 0.21.0.
2017-08-11 00:20:30 +02:00
d14e5eaa19
gnu: ruby-slop: Update to 4.5.0.
...
* gnu/packages/ruby.scm (ruby-slop): Update to 4.5.0.
2017-08-11 00:20:29 +02:00
c2f93e9c07
gnu: openjpeg: Update to 2.2.0 [security fixes].
...
In addition to the patches we already had (which are not mentioned in the
ChangeLog, but verified by following their respective GitHub issues) this
release also fixes CVE-2016-9112, CVE-2016-5139, CVE-2016-5152, CVE-2016-5158,
CVE-2016-5159, CVE-2016-1626 and CVE-2016-1628.
See <https://github.com/uclouvain/openjpeg/blob/v2.2.0/CHANGELOG.md > for details.
* gnu/packages/patches/openjpeg-CVE-2016-9572-CVE-2016-9573.patch,
gnu/packages/patches/openjpeg-CVE-2016-9850-CVE-2016-9851.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/image.scm (openjpeg): Update to 2.2.0.
[source](patches): Remove.
* gnu/packages/gstreamer.scm (gst-plugins-bad)[arguments]: Add phase to patch
hard-coded openjpeg-2.1 path.
2017-08-10 22:23:31 +02:00
1a1558e88f
gnu: postgresql: Update to 9.6.4 [fixes CVE-2017-{7546,7547,7548}].
...
See <https://www.postgresql.org/about/news/1772/ > for more information.
* gnu/packages/databases.scm (postgresql): Update to 9.6.4.
2017-08-10 22:23:31 +02:00
1e07daa27a
gnu: mercurial: Update to 4.2.3 [fixes CVE-2017-1000116].
...
* gnu/packages/version-control.scm (mercurial): Update to 4.2.3.
2017-08-10 15:02:04 -04:00
38f8a882ab
gnu: git: Update to 2.14.1 [fixes CVE-2017-1000117].
...
* gnu/packages/version-control.scm (git): Update to 2.14.1.
2017-08-10 15:02:04 -04:00
5993f7c455
gnu: subversion: Update to 1.8.19 [fixes CVE-2017-9800].
...
* gnu/packages/version-control.scm (subversion): Update to 1.8.19.
[source]: Add alternate URL.
2017-08-10 15:02:04 -04:00
f262f44683
gnu: Add emacs-engine-mode.
...
* gnu/packages/emacs.scm (emacs-engine-mode): New variable.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-10 22:25:25 +05:30
783daa4982
gnu: libsoup: Update to 2.58.2 (fixes CVE-2017-2885).
...
* gnu/packages/gnome.scm (libsoup): Update to 2.58.2.
2017-08-10 12:25:31 -04:00
ddde3f6be1
gnu: catimg: Update to 2.4.0.
...
* gnu/packages/image-viewers.scm (catimg): Update to 2.4.0.
2017-08-10 17:26:08 +02:00
226685faa5
gnu: cppcheck: Update to 1.80.
...
* gnu/packages/check.scm (cppcheck): Update to 1.80.
2017-08-10 17:26:07 +02:00
c63b83a40f
gnu: vdirsyncer: Update to 0.16.1.
...
* gnu/packages/dav.scm (vdirsyncer): Update to 0.16.1.
2017-08-10 17:26:07 +02:00
37b08547e4
gnu: ruby-bio-commandeer: Update to 0.4.0.
...
* gnu/packages/ruby.scm (ruby-bio-commandeer): Update to 0.4.0.
2017-08-10 22:20:38 +10:00
27feda65e7
gnu: Add emacs-erc-hl-nicks.
...
* gnu/packages/emacs.scm (emacs-erc-hl-nicks): New variable.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-10 14:55:09 +05:30
1ee879e967
gnu: Add emacs-gitpatch.
...
By the way, “gitpatch.el” says different version than release tarball.
Do I need to ask a developer?
--8<---------------cut here---------------start------------->8---
;; Author: Feng Shu <tumashu@163.com>
;; Homepage: https://github.com/tumashu/gitpatch
;; Keywords: convenience
;; Package-Requires: ((emacs "24.3"))
;; Version: 0.10
--8<---------------cut here---------------end--------------->8---
>From 9eddf07fa401468738c2f48a25e51ddef2a3ceed Mon Sep 17 00:00:00 2001
From: Oleg Pykhalov <go.wigust@gmail.com>
Date: Sat, 29 Jul 2017 14:22:48 +0300
Subject: [PATCH] gnu: Add emacs-gitpatch.
* gnu/packages/emacs.scm (emacs-gitpatch): New variable.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-10 14:37:17 +05:30
a88adeb343
gnu: Add emacs-git-messenger.
...
gnu/packages/emacs.scm (emacs-git-messenger): New variable.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-10 13:27:05 +05:30
1012056625
services: admin: Simplify the handling of the Tailon debug? option.
...
* gnu/services/admin.scm (tailon-configuration-file-compiler): Simplify the
handling of debug?.
2017-08-09 23:50:35 +01:00
91fdc8a574
services: Update the Tailon service for Tailon 1.3.0.
...
Tailon 1.3.0 (upgraded from 1.1.1) adds support for HTTP authentication.
* gnu/services/admin.scm (<tailon-configuration-file>): Add http-auth and
users configuration values.
(tailon-configuration-file-http-auth, tailon-configuration-file-users): New
procedures.
(tailon-configuration-file-compiler): Add support for the http-auth and
users configuration options.
* doc/guix.texi (Monitoring Services): Document authentication for Tailon.
2017-08-09 23:50:31 +01:00
f2d8e7f720
services: Add missing wrap-lines option to tailon.
...
* gnu/services/admin.scm (<tailon-configuration-file>): Add wrap-lines.
(tailon-configuration-wrap-lines): New procedure.
(tailon-configuration-file-compiler): Add support for wrap-lines.
* doc/guix.texi (Monitoring Services): Document the wrap-lines Tailon
configuration option.
2017-08-09 23:50:27 +01:00
761f5865c8
gnu: Update tailon to version 1.3.0.
...
From version 1.1.1.
* gnu/packages/logging.scm (tailon)[version]: Change to 1.3.0.
[inputs]: Add python-tornado-http-auth.
2017-08-09 23:50:23 +01:00
c795bc79d9
gnu: Add python-tornado-http-auth.
...
* gnu/packages/python.scm (python-tornado-http-auth): New variable.
2017-08-09 23:50:10 +01:00
d156c999d0
Merge branch 'master' into core-updates
2017-08-10 00:18:36 +02:00
4c6c683862
gnu: nmap: Update to 7.60.
...
* gnu/packages/admin.scm (nmap): Update to 7.60.
2017-08-10 00:15:35 +02:00
79d9525071
gnu: curl: Update replacement to 7.55.0. [security fixes]
...
Fixes CVE-2017-1000099, CVE-2017-1000100, and CVE-2017-100101.
See <https://curl.haxx.se/docs/security.html > for details.
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.55.0.
(curl-7.54.1): Rename to ...
(curl-7.55.0): ... this.
[source]: Update source URI to match upstream compression method change.
[arguments]: Add 'fix-Makefile' phase.
2017-08-10 00:15:35 +02:00
2e8c61fcf0
gnu: samba: Update to 4.6.7.
...
* gnu/packages/samba.scm (samba): Update to 4.6.7.
2017-08-10 00:15:34 +02:00
cc294bcee6
Merge branch 'master' into core-updates
2017-08-09 17:25:31 -04:00
ae7f246cf1
gnu: python-nbformat: Update to 4.3.0.
...
* gnu/packages/python.scm (python-nbformat, python2-nbformat): Update to 4.3.0.
2017-08-09 16:52:51 -04:00
10756b9ed1
gnu: gnupg: Update to 2.1.23.
...
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.23.
[arguments]: Remove 'enable-gpg2-is-gpg' from #:configure-flags, since it is now
the default.
2017-08-09 16:01:33 -04:00
1b22ecdac4
gnu: r-wgcna: Update to 1.61.
...
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.61.
[propagated-inputs]: Add r-rcpp, r-robust, r-survival.
2017-08-09 20:08:13 +02:00
c5f744a68d
gnu: Add r-robust.
...
* gnu/packages/statistics.scm (r-robust): New variable.
2017-08-09 20:08:13 +02:00
5d0afe8849
gnu: Add r-fit-models.
...
* gnu/packages/statistics.scm (r-fit-models): New variable.
2017-08-09 20:08:13 +02:00
0bae5fd6a7
gnu: Add r-rrcov.
...
* gnu/packages/statistics.scm (r-rrcov): New variable.
2017-08-09 20:08:13 +02:00
23841b2573
gnu: Add r-pcapp.
...
* gnu/packages/statistics.scm (r-pcapp): New variable.
2017-08-09 20:08:13 +02:00
0ecd065839
gnu: r-gdtools: Update to 0.1.5.
...
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.5.
2017-08-09 20:08:12 +02:00
c3317cd9fb
gnu: r-ggbeeswarm: Update to 0.6.0.
...
* gnu/packages/statistics.scm (r-ggbeeswarm): Update to 0.6.0.
2017-08-09 20:08:12 +02:00
ea0277abcd
gnu: icecat: Add more fixes from upstream mozilla-esr52.
...
* gnu/packages/gnuzilla.scm (icecat)[source]: Add fixes for CVE-2017-7802,
CVE-2017-7803, CVE-2017-7807, and the remaining 6 out of 23 changesets for
CVE-2017-7779.
2017-08-09 13:16:52 -04:00
12025fb9b0
gnu: icecat: Rename patches to reflect CVE assignments.
...
Document that our existing patches include fixes for CVE-2017-7753,
CVE-2017-7784, CVE-2017-7786, CVE-2017-7787, CVE-2017-7791, CVE-2017-7792,
CVE-2017-7798, CVE-2017-7798, CVE-2017-7800, CVE-2017-7801, and 17 out of 23
changesets for CVE-2017-7779.
* gnu/packages/gnuzilla.scm (icecat)[source]: Rename patches to reflect CVE
assignments.
2017-08-09 13:16:43 -04:00
28e12d6c81
gnu: gnurl: Update to 7.55.0.
...
* gnu/packages/gnunet.scm (gnurl): Update to 7.55.0.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2017-08-09 18:16:51 +02:00
a4afc536f9
gnu: virt-manager: Update to 1.4.2.
...
* gnu/packages/virtualization.scm (virt-manager): Update to 1.4.2.
2017-08-09 16:45:32 +02:00
448052b713
gnu: libgdata: Disable failing tests.
...
* gnu/packages/gnome.scm (libgdata)[arguments]: Add ‘disable-failing-tests’
phase.
2017-08-09 16:31:06 +02:00
18f5d2a70a
gnu: Add reference to (gnu packages graph).
...
This is a follow-up to 1738138cb3
2017-08-09 15:43:35 +02:00
1738138cb3
gnu: r-igraph: Move to (gnu packages graph).
...
* gnu/packages/statistics.scm (r-igraph): Move from here...
* gnu/packages/graph.scm (r-igraph): ...to here.
2017-08-09 14:47:47 +02:00
31476df32e
gnu: Add python-igraph.
...
* gnu/packages/graph.scm (python-igraph): New variable.
2017-08-09 14:47:47 +02:00
e57fffad90
gnu: Add igraph.
...
* gnu/packages/graph.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2017-08-09 14:47:47 +02:00
ea77385c4c
gnu: viewnior: Don't build icon-theme.cache.
...
* gnu/packages/image-viewers.scm (viewnior)[arguments]: Add phase to
disable building the icon-theme.cache.
2017-08-09 14:09:43 +03:00
2d5bf32b8a
gnu: googletest: Build shared libraries.
...
* gnu/packages/check.scm (googletest)[arguments]: Pass "-DBUILD_SHARED_LIBS=ON"
in #:configure-flags.
2017-08-09 13:53:29 +03:00
c608fe8cf3
gnu: Add ois.
...
* gnu/packages/game-development.scm (ois): New variable.
2017-08-09 13:53:16 +03:00
d84b09e937
gnu: dealii: Update to 8.5.0.
...
* gnu/packages/maths.scm (dealii): Update to 8.5.0.
[arguments]: Delete 'hint-example-prefix phase, which would need adjusting for
this version. Users can use e.g. 'export DEAL_II_DIR=$GUIX_ENVIRONMENT'.
Adjust configuration flags.
2017-08-09 01:56:53 -05:00
05cca6ce90
gnu: stress-make: Patch default shell.
...
* gnu/packages/debug.scm (stress-make)[arguments]: Add 'set-default-shell
phase.
2017-08-09 01:56:53 -05:00
bd5b5ac0c5
gnu: suitesparse: Update to 4.5.5.
...
* gnu/packages/maths.scm (suitesparse): Update to 4.5.5.
[source]: Add 'modules' and 'snippet' field to remove bundled source.
[arguments]: Remove 'prepare-out' phase. Adjust #:make-flags for metis.
Make build parallel, since it now appears to be safe.
[inputs]: Add metis.
2017-08-09 01:56:53 -05:00
2509522c4f
gnu: suitesparse: Use modify-phases.
...
* gnu/packages/maths.scm (suitesparse)[arguments]: Use modify-phases.
2017-08-09 01:56:53 -05:00
9731c412e9
gnu: petsc, slepc: Use 'parallel-job-count'.
...
* gnu/packages/maths.scm (petsc, slepc)[arguments]: Set #:make-flags to
override default unlimited '-j'.
(petsc)[arguments]: Scrub build machine cores from installed files in
'clean-local-references' phase.
2017-08-09 01:56:53 -05:00
baeaf8821d
gnu: slepc: Update to 3.7.4.
...
* gnu/packages/maths.scm (slepc): Update to 3.7.4.
[source]: Use direct source link. Remove 'file-name' field.
2017-08-09 01:56:52 -05:00
41a46a5035
gnu: petsc: Update to 3.7.6.
...
* gnu/packages/maths.scm (petsc): Update to 3.7.6.
2017-08-09 01:56:46 -05:00
026051953d
gnu: epiphany: Update to 3.24.3.
...
* gnu/packages/gnome.scm (epiphany): Update to 3.24.3.
2017-08-09 07:20:57 +02:00
c762011e40
gnu: tracker: Update to 1.12.2.
...
* gnu/packages/gnome.scm (tracker): Update to 1.12.2.
2017-08-09 07:20:56 +02:00
666901b298
gnu: gnome-online-accounts: Update to 3.24.2.
...
* gnu/packages/gnome.scm (gnome-online-accounts): Update to 3.24.2.
2017-08-09 07:20:56 +02:00
a51fc34c28
gnu: mutter: Update to 3.24.4.
...
* gnu/packages/gnome.scm (mutter): Update to 3.24.4.
2017-08-09 07:20:55 +02:00
0d2df50caf
gnu: gedit: Support gspell.
...
* gnu/packages/gnome.scm (gedit)[arguments]: Remove #:configure-flags.
[inputs]: Add gspell.
2017-08-09 07:20:55 +02:00
e3705bb6ea
gnu: gedit: Update to 3.22.1.
...
* gnu/packages/gnome.scm (gedit): Update to 3.22.1.
2017-08-09 07:20:54 +02:00
eccd35be3d
gnu: gspell: Propagate enchant dependency.
...
* gnu/packages/gnome.scm (gspell)[inputs]: Move enchant from here...
[propagated-inputs]: ...to here.
2017-08-09 07:20:09 +02:00
a801ae4cae
gnu: gspell: Order inputs alphabetically.
...
* gnu/packages/gnome.scm (gspell)[inputs, native-inputs]: Re-order.
2017-08-09 07:20:09 +02:00
9099bedfea
gnu: gnumeric: Update to 1.12.35.
...
* gnu/packages/gnome.scm (gnumeric): Update to 1.12.35.
2017-08-09 07:20:08 +02:00
e2bf423ab4
gnu: brasero: Update to 3.12.2.
...
* gnu/packages/gnome.scm (brasero): Update to 3.12.2.
2017-08-09 07:20:08 +02:00
f032d0be9c
gnu: Use HTTPS for gnome.org and subdomains.
...
* gnu/packages/fonts.scm (font-bitstream-vera)[home-page]: Use HTTPS.
* gnu/packages/glib.scm (glib)[home-page]: Likewise.
* gnu/packages/gnome.scm (gcr, libgnome-keyring, gnome-keyring, evince)
(gnome-icon-theme, libgsf, gnome-mime-data, vala, vte, python2-rsvg)
(glib-networking, gnome-settings-daemon, libchamplain, grilo, grilo-plugins)
(gjs, zenity, mutter, network-manager, network-manager-applet, gdm)
[home-page]: Likewise.
* gnu/packages/gtk.scm (gtk-engines, murrine)[home-page]: Likewise.
2017-08-09 00:49:41 +02:00
9bb47d7df8
gnu: 0ad: Update to 0.0.22-alpha.
...
* gnu/packages/games.scm (0ad-data, 0ad): Update to 0.0.22-alpha.
2017-08-08 21:24:01 +01:00
0642838b2e
services: herd: Add a stop-service procedure.
...
* gnu/services/herd.scm (stop-service): New procedure.
2017-08-08 20:49:08 +01:00
dc7b3e5633
services: herd: Fix matching ok responses from shepherd service.
...
Previously the match expression case for a successful response
(where error is #f) required that the result component contained a list with a
single element.
As far as I see when looking at the responses from the shepherd, this is not
normally the case. Therefore, to avoid treating successful responses as
errors, make the match requirement more permissive, accepting any value.
* gnu/services/herd.scm (invoke-action): Change match condition for ok responses.
2017-08-08 20:48:53 +01:00
65831c6425
gnu: babl: Update to 0.1.28.
...
* gnu/packages/gimp.scm (babl): Update to 0.1.28.
2017-08-08 18:43:07 +03:00
3616ff51b3
gnu: gegl: Use 'modify-phases' syntax.
...
* gnu/packages/gimp.scm (gegl)[arguments]: Use the 'modify-phases' syntax.
2017-08-08 18:43:05 +03:00
b0a21b56db
gnu: gegl: Fix building on aarch64.
...
* gnu/packages/gimp.scm (gegl)[arguments]: Add '-lm' configure-flag.
2017-08-08 18:43:03 +03:00
cc36165efa
gnu: ruby-activesupport: Update to 5.1.3.
...
* gnu/packages/ruby.scm (ruby-activesupport): Update to 5.1.3.
2017-08-08 21:54:20 +10:00
b998781d24
gnu: pciutils: Update to 3.5.5.
...
* gnu/packages/pciutils.scm (pciutils): Update to 3.5.5.
2017-08-08 05:23:38 +02:00
a40af5d0ad
gnu: hunspell: Update to 1.6.1.
...
* gnu/packages/libreoffice.scm (hunspell): Update to 1.6.1.
[native-inputs]: Add autoconf, automake, and libtool.
[arguments]: Add ‘bootstrap’ phase.
2017-08-08 05:23:37 +02:00
fc3560fff1
gnu: hunspell: Update home page.
...
* gnu/packages/libreoffice.scm (hunspell)[home-page]: Update it.
2017-08-08 05:23:37 +02:00
625761a502
gnu: aspell-dict-en: Update to 2017.01.22-0.
...
Add missing copyright line for 2016.
* gnu/packages/aspell.scm (aspell-dict-en): Update to 2017.01.22-0.
2017-08-08 05:23:37 +02:00
d459524713
gnu: moreutils: Update to 0.61.
...
* gnu/packages/moreutils.scm (moreutils): Update to 0.61.
2017-08-08 05:23:36 +02:00
7fae2063f8
gnu: sudo: Use ‘modify-phases’ syntax.
...
* gnu/packages/admin.scm (sudo)[arguments]: Use ‘modify-phases’.
2017-08-08 05:23:36 +02:00
4f4134c26d
gnu: linux-libre: Update to 4.12.5.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.5.
(%linux-libre-hash): Update hash.
2017-08-07 21:33:03 -04:00
99ccc74725
gnu: linux-libre@4.9: Update to 4.9.41.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.41.
2017-08-07 21:32:13 -04:00
c56b08b1e5
gnu: linux-libre@4.4: Update to 4.4.80.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.80.
2017-08-07 21:31:36 -04:00
c36e27d504
gnu: linux-libre@4.1: Update to 4.1.43.
...
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.43.
2017-08-07 21:30:47 -04:00
63755fcd65
gnu: ruby-puma: Update to 3.9.1.
...
* gnu/packages/ruby.scm (ruby-puma): Update to 3.9.1.
[source]: Remove patch.
[arguments]: Disable tests.
[native-inputs]: Remove field.
* gnu/packages/patches/ruby-puma-ignore-broken-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-08 09:31:18 +10:00
5b0c223ae3
gnu: ruby-nokogiri-diff: Update to 0.2.0-1.a38491e4.
...
* gnu/packages/ruby.scm (ruby-nokogiri-diff): Update to 0.2.0-1.a38491e4.
2017-08-08 09:30:44 +10:00
5071f17b29
gnu: ruby-tdiff: Update to 0.3.3-1.b662a604.
...
* gnu/packages/ruby.scm: Update to 0.3.3-1.b662a604
2017-08-08 09:30:40 +10:00
e7ea30d59a
ruby: Replace with ruby-2.4.1.
...
* gnu/packages/ruby.scm (ruby-2.4.1): New variable.
(ruby)[replacement]: New field.
2017-08-08 09:30:02 +10:00
2d9495da23
Merge branch 'master' into core-updates
2017-08-07 16:45:16 -04:00
57e96e48b1
gnu: propeller-gcc-4: Don't build on aarch64-linux.
...
* gnu/packages/embedded.scm (propeller-gcc-4)[supported-system]: New field.
2017-08-07 17:02:24 +03:00
6eed26443f
gnu: nim: Update to 0.17.0.
...
* gnu/packages/nim.scm (nim): Update to 0.17.0.
[source, home-page]: Use https.
[arguments]: Patch more shebangs, use custom build phase.
2017-08-07 13:37:28 +03:00
c97fbf55e7
gnu: texlive: Remove texlive-minimal.
...
This package is superseded by the modular TeX Live distribution.
* gnu/packages/tex.scm (texlive-minimal, texlive-texmf-minimal): Remove
variables.
2017-08-07 12:29:20 +02:00
1335167a3b
gnu: biber: Update to 2.7.
...
* gnu/packages/tex.scm (biber)[name]: Rename to 'biber'.
(biber-2.5): Remove variable.
2017-08-07 12:08:58 +02:00
149f668821
gnu: texlive: Update to 2017.
...
* gnu/packages/tex.scm (texlive, texlive-texmf): Update to 2017.
(texlive-texmf-src): Update to 20170524. Remove
'texlive-texmf-CVE-2016-10243.patch'.
(texlive-bin, texlive-extra-src): Update to 20170524.
* gnu/packages/patches/texlive-texmf-CVE-2016-10243.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-07 12:08:03 +02:00
83fef82b7c
gnu: cubicle: Fix evaluation.
...
* gnu/packages/maths.scm (cubicle)[native-inputs]: Retrieve WHICH from
(gnu packages base).
2017-08-07 12:02:33 +02:00
cda20ee816
gnu: vapoursynth: Don't build on aarch64-linux.
...
* gnu/packages/video.scm (vapoursynth)[supported-systems]: Remove
aarch64-linux from the supported-systems.
2017-08-07 07:24:17 +03:00
74033bbcc3
gnu: youtube-dl: Update to 2017.08.06.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.08.06.
2017-08-07 05:28:34 +02:00
d8af4f6dde
gnu: ntfs-3g: Update to 2017.3.23.
...
* gnu/packages/linux.scm (ntfs-3g): Update to 2017.3.23.
[source]: Remove patch.
* gnu/packages/patches/ntfs-3g-CVE-2017-0358.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-07 02:01:34 +02:00
8bad0c0bbb
gnu: ntfs-3g: Use HTTPS for the home page as well.
...
* gnu/packages/linux.scm (ntfs-3g)[home-page]: Use HTTPS.
2017-08-07 02:01:33 +02:00
ea94aff7da
gnu: wimlib: Update to 1.12.0.
...
* gnu/packages/backup.scm (wimlib): Update to 1.12.0.
2017-08-07 02:01:32 +02:00
9d217d277e
gnu: r-bsgenome-hsapiens-ucsc-hg19: Restore original hash.
...
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19)[source]:
Restore hash from before the tarball changed in place. It changed back.
This reverts commit fd40857938
2017-08-07 01:58:39 +02:00
46f3c8f289
gnu: khal: Don't propagate vdirsyncer.
...
* gnu/packages/calendar.scm (khal)[propagated-inputs]: Move vdirsyncer ...
[native-inputs]: ... here.
2017-08-06 16:58:03 -04:00
fd8f946379
gnu: python-icalendar: Update to 3.11.6.
...
* gnu/packages/python.scm (python-icalendar): Update to 3.11.6.
2017-08-06 16:58:02 -04:00
03776ebd36
gnu: mpg123: Update to 1.25.4.
...
* gnu/packages/mp3.scm (mpg123): Update to 1.25.4.
2017-08-06 16:58:02 -04:00
b0c95908c0
gnu: freedoom: Update to 0.11.3.
...
* gnu/packages/games.scm (freedoom): Update to 0.11.3.
[arguments]: Remove unnecessary "no" phase.
2017-08-06 14:13:07 -04:00
f7b60fdc36
gnu: deutex: Update to 5.0.0.
...
* gnu/packages/game-development.scm (deutex): Update to 5.0.0.
[source]: Change upstream URI.
[arguments]: Enable tests and restore normal "configure" and "install"
phases.
[native-inputs]: Add asciidoc.
2017-08-06 14:13:07 -04:00
403097d26d
gnu: Add motti.
...
* gnu/packages/motti.scm (motti): New variable.
2017-08-06 19:13:33 +03:00
b7ac10e6da
gnu: keepassx: Superseded by keepassxc.
...
* gnu/packages/password-utils.scm (keepassx)[properties]: New field.
2017-08-06 19:13:32 +03:00
99672f7b1d
gnu: Add keepassxc.
...
* gnu/packages/password-utils.scm (keepassxc): New variable.
2017-08-06 19:13:06 +03:00
3ea2eaa8f3
gnu: python-efl: Update to 1.20.0.
...
* gnu/packages/enlightenment.scm (python-efl): Update to 1.20.0.
[source]: Add alternate source uri.
[arguments]: Enable tests.
2017-08-06 18:13:09 +03:00
87cd1f5c2a
gnu: efl: Update to 1.20.1.
...
* gnu/packages/enlightenment.scm (efl): Update to 1.20.1.
2017-08-06 18:13:05 +03:00
3bfee8ff02
gnu: make-u-boot-package: Don't unnecessarily cross-compile.
...
* gnu/packages/bootloaders.scm (make-u-boot-package)[native-inputs]: Only
use cross-gcc and cross-binutils if compiling for a different
architecture.
[arguments]: Only use cross compiling make-flags if cross compiling.
2017-08-06 18:13:03 +03:00
18c6a7b4c8
gnu: Add python-flask-httpauth.
...
* gnu/packages/python.scm (python-flask-httpauth, python2-flask-httpauth):
New variables.
2017-08-06 13:35:07 +02:00
abd8825f90
gnu: Add font-open-dyslexic.
...
* gnu/packages/fonts.scm (font-open-dyslexic): New variable.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-06 10:49:52 +05:30
799097e445
gnu: gnucash: Update to 2.6.17.
...
* gnu/packages/gnucash.scm (gnucash): Update to 2.6.17.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-06 10:01:56 +05:30
f167595ba1
Merge branch 'master' into core-updates
2017-08-06 00:23:20 -04:00
e3df6938ac
gnu: libtasn1: Add replacement to fix CVE-2017-10790.
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Based on commit 01a61d7040
2017-08-06 00:21:09 -04:00
01a61d7040
gnu: libtasn1: Fix CVE-2017-10790.
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* gnu/packages/patches/libtasn1-CVE-2017-10790.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (libtasn1/fixed)[source]: Use it.
2017-08-05 20:17:53 -04:00
9833bcfc08
build: Allow mounting of entire disks.
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* gnu/build/file-systems.scm (disk-partitions): Also return entire drives.
2017-08-05 18:49:33 +02:00
91d94e28ec
gnu: emacs-exwm-x: Do not set DISPLAY.
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* gnu/packages/emacs.scm (emacs-exwm-x): Do not set DISPLAY. The issue has
been fixed upstream in exwm-0.15.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-05 18:58:58 +05:30
e78e38a4bb
gnu: emacs-exwm: Update to 0.15.
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* gnu/packages/emacs.scm (emacs-exwm): Update to 0.15.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-05 18:48:54 +05:30
7f171fdaad
gnu: git: Update to 2.14.0.
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* gnu/packages/version-control.scm (git): Update to 2.14.0.
2017-08-05 14:07:43 +02:00
eedcfa704e
gnu: lftp: Update to 4.7.8.
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* gnu/packages/ftp.scm (lftp): Update to 4.7.8.
2017-08-05 14:07:42 +02:00
3d5d87a3ae
gnu: Add cubicle.
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* gnu/packages/maths.scm (cubicle): New variable.
2017-08-05 10:11:42 +02:00
a56bf101c6
gnu: perl: Work around more "dotless @INC" build issues.
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* gnu/packages/web.scm (perl-www-curl)[arguments]: Add 'set-search-path'
phase.
* gnu/packages/bioinformatics.scm (ngs-sdk)[arguments]: Augment
'configure' phase to set PERL5LIB.
* gnu/packages/image.scm (steghide)[arguments]: Add #:phases argument.
2017-08-05 00:31:26 +02:00
240d3ceff7
gnu: python-argcomplete: Add dependency on the full Bash.
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Fixes a regression introduced in
704243e0c6
2017-08-05 00:31:26 +02:00
90ea83ee95
gnu: bluez: Work around test failure on ARM.
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This aims to skip the segfaulting test at
<https://hydra.gnu.org/build/2195551 >.
* gnu/packages/linux.scm (bluez)[arguments]: Add #:make-flags
when (%current-system) is "armhf-linux".
2017-08-05 00:02:55 +02:00
1cec346232
gnu: php: Update to 7.1.8.
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* gnu/packages/patches/gd-CVE-2017-7890.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it
* gnu/packages/php.scm (php): Update to 7.1.8.
2017-08-04 18:58:33 +02:00
8d6c845d68
gnu: Add r-crosstalk.
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* gnu/packages/web.scm (r-crosstalk): New variable.
2017-08-04 11:23:53 +02:00
a3cd23b639
gnu: Add r-shiny.
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* gnu/packages/web.scm (r-shiny): New variable.
2017-08-04 11:23:53 +02:00
0b0aa76fa8
gnu: Add js-es5-shim.
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* gnu/packages/javascript.scm (js-es5-shim): New variable.
2017-08-04 11:23:53 +02:00
4f65067bde
gnu: Add js-selectize.
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* gnu/packages/javascript.scm (js-selectize): New variable.
2017-08-04 11:23:53 +02:00
c4abc94d2b
gnu: Add js-datatables.
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* gnu/packages/javascript.scm (js-datatables): New variable.
2017-08-04 11:23:53 +02:00
a6bbb2a0d8
gnu: Add js-highlight.
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* gnu/packages/javascript.scm (js-highlight): New variable.
2017-08-04 11:23:53 +02:00
3f48403aaf
gnu: Add js-strftime.
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* gnu/packages/javascript.scm (js-strftime): New variable.
2017-08-04 11:23:52 +02:00
68ffb6c586
gnu: Add js-json2.
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* gnu/packages/javascript.scm (js-json2): New variable.
2017-08-04 11:23:52 +02:00
ed69963b03
gnu: Add js-html5shiv.
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* gnu/packages/javascript.scm (js-html5shiv): New variable.
2017-08-04 11:23:52 +02:00
b316caaa9c
gnu: python-lz4: Fix typo in synopsis.
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* gnu/packages/compression.scm (python-lz4)[synopsis]: Fix typo.
2017-08-04 05:00:26 +02:00
e9f6a935fb
gnu: python-lz4: Update to 0.10.1.
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* gnu/packages/compression.scm (python-lz4): Update to 0.10.1.
[native-inputs]: Add python-setuptools-scm.
2017-08-04 04:59:48 +02:00
54360c917e
gnu: diffoscope: Use HTTPS.
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* gnu/packages/package-management.scm (diffoscope)[home-page]: Use HTTPS.
2017-08-04 04:34:41 +02:00
3b4018d6f2
gnu: sshoot: Update to 1.2.6.
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* gnu/packages/vpn.scm (sshoot): Update to 1.2.6.
[home-page]: Update to new project home.
2017-08-04 04:34:41 +02:00
f58be41761
gnu: fabric: Update to 1.13.2.
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* gnu/packages/admin.scm (fabric): Update to 1.13.2. Remove outdated comments.
[source]: Remove ‘patches’.
* gnu/packages/patches/fabric-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-04 03:46:49 +02:00
19dd5097d9
gnu: certbot, python-acme: Update to 0.17.0.
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* gnu/packages/tls.scm (certbot, python-acme, python2-acme): Update to 0.17.0.
2017-08-04 02:32:53 +02:00
9a7fd375a2
gnu: xonsh: Update to 0.5.12.
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* gnu/packages/shells.scm (xonsh): Update to 0.5.12.
2017-08-04 02:06:39 +02:00
b55d15e795
gnu: cmark: Update to 0.28.0.
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* gnu/packages/markup.scm (cmark): Update to 0.28.0.
2017-08-04 01:51:23 +02:00
0a3ecfd29c
gnu: thefuck: Update to 3.19.
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* gnu/packages/admin.scm (thefuck): Update to 3.19.
2017-08-04 01:51:23 +02:00
30ac4cc7e6
gnu: zerofree: Update to 1.1.0.
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* gnu/packages/linux.scm (zerofree): Update to 1.1.0.
[home-page, source]: Update from old, inaccessible location.
2017-08-04 01:51:22 +02:00
4de4a1cfcc
gnu: zerofree: Expand description.
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* gnu/packages/linux.scm (zerofree)[description]: Expand.
2017-08-04 01:51:22 +02:00
7a068459ba
gnu: zerofree: Use ‘install-file’.
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* gnu/packages/linux.scm (zerofree)[arguments]: Simplify install phase,
using ‘install-file’.
2017-08-04 01:51:21 +02:00
0f08917df3
gnu: zerofree: Use ‘modify-phases’ syntax.
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* gnu/packages/linux.scm (zerofree)[arguments]: Use ‘modify-phases’.
2017-08-04 01:51:21 +02:00
20f8d1dd78
gnu: sshfs-fuse: Update to 2.10.
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* gnu/packages/linux.scm (sshfs-fuse): Update to 2.10.
2017-08-04 01:51:20 +02:00
c89091459f
gnu: freerdp: Update to 2.0.0-rc0 [security fixes].
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Fixes CVE-2017-{2834,2835,2836,2837,2838,2839}.
Reported by Leo Famulari in <https://bugs.gnu.org/27939 >.
* gnu/packages/rdesktop.scm (freerdp): Update to 2.0.0-rc0.
[source]: Use tarball release. Adjust file-name.
[arguments]: Remove #:phases.
2017-08-04 00:52:52 +02:00
c9f4f56b24
gnu: git: Enable tests.
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* gnu/packages/version-control.scm (git)[arguments]: Remove #:tests?. Add
'patch-tests' phase.
2017-08-04 00:52:13 +02:00
81ca29a6d6
gnu: gnupg@1.4: Update to 1.4.22 [fixes CVE-2017-7526].
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* gnu/packages/gnupg.scm (gnupg-1): Update to 1.4.22.
2017-08-03 18:06:19 -04:00
c8737b1e41
gnu: icedtea@3.5.0: Properly handle decoding error while substituting.
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* gnu/packages/java.scm (icedtea-8)[arguments] <patch-jni-libs>: Change
'encoding-error to 'decoding-error, which is what Guile 2.2 raises when
failing to decode an input file.
2017-08-03 22:46:14 +02:00
9e37e537a2
gnu: Add missing references to (gnu packages cran).
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This is a follow-up to commit a8cba9dd11
2017-08-03 22:15:57 +02:00
7cb6155088
gnu: bioinformatics.scm: Use (gnu packages cran) module.
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This is a follow up to a8cba9dd11
2017-08-03 21:39:12 +03:00
cf189709bc
vm: Use grub-hybrid's grub-mkrescue.
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* gnu/system/vm.scm (system-disk-image): Use grub-hybrid's grub-mkrescue.
* gnu/bootlader/grub.scm (grub-mkrescue-bootloader): New variable.
2017-08-03 18:13:03 +02:00
2267e4d3f6
gnu: r-purrr: Update to 0.2.3.
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* gnu/packages/statistics.scm (r-purrr): Update to 0.2.3.
[propagated-inputs]: Remove r-rcpp and r-lazyeval; add r-rlang.
2017-08-03 17:53:55 +02:00
ceb802a31c
gnu: r-desc: Update to 1.1.1.
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* gnu/packages/statistics.scm (r-desc): Update to 1.1.1.
2017-08-03 17:53:55 +02:00
5e0de29892
gnu: r-seqminer: Update to 6.0.
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* gnu/packages/bioinformatics.scm (r-seqminer): Update to 6.0.
2017-08-03 17:53:54 +02:00
4e0c847d59
gnu: r-wgcna: Update to 1.60.
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* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.60.
2017-08-03 17:53:54 +02:00
c8a9b2bcbf
gnu: r-qtl: Update to 1.41-6.
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* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.41-6.
2017-08-03 17:53:54 +02:00
023aa8ff58
gnu: r-seqinr: Update to 3.4-5.
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* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.4-5.
2017-08-03 17:53:54 +02:00
7150f1c30c
gnu: r-optparse: Update to 1.4.4.
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* gnu/packages/bioinformatics.scm (r-optparse): Update to 1.4.4.
2017-08-03 17:53:53 +02:00
3f6ec083ec
gnu: r-bookdown: Update to 0.4.
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* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.4.
2017-08-03 17:53:53 +02:00
85cd755417
gnu: r-tclust: Update to 1.2-7.
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* gnu/packages/statistics.scm (r-tclust): Update to 1.2-7.
2017-08-03 17:53:53 +02:00
6bb4bfa4bc
gnu: r-car: Update to 2.1-5.
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* gnu/packages/statistics.scm (r-car): Update to 2.1-5.
2017-08-03 17:53:53 +02:00
0f008abe7a
gnu: r-rcppeigen: Update to 0.3.3.3.0.
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* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.0.
2017-08-03 17:53:53 +02:00
12c3bbb662
gnu: r-pbapply: Update to 1.3-3.
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* gnu/packages/statistics.scm (r-pbapply): Update to 1.3-3.
2017-08-03 17:53:52 +02:00
4431dd3a4e
gnu: r-vgam: Update to 1.0-4.
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* gnu/packages/statistics.scm (r-vgam): Update to 1.0-4.
2017-08-03 17:53:52 +02:00
41692b2963
gnu: r-mclust: Update to 5.3.
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* gnu/packages/statistics.scm (r-mclust): Update to 5.3.
2017-08-03 17:53:52 +02:00
60869fb2f8
gnu: r-flexmix: Update to 2.3-14.
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* gnu/packages/statistics.scm (r-flexmix): Update to 2.3-14.
2017-08-03 17:53:52 +02:00
62d3afc3d6
gnu: r-fastica: Update to 1.2-1.
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* gnu/packages/statistics.scm (r-fastica): Update to 1.2-1.
2017-08-03 17:53:52 +02:00
df03b6f90c
gnu: r-cowplot: Update to 0.8.0.
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* gnu/packages/statistics.scm (r-cowplot): Update to 0.8.0.
2017-08-03 17:53:51 +02:00
d58faa7f44
gnu: r-rann: Update to 2.5.1.
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* gnu/packages/statistics.scm (r-rann): Update to 2.5.1.
2017-08-03 17:53:51 +02:00
a8c2706de2
gnu: r-statmod: Update to 1.4.30.
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* gnu/packages/statistics.scm (r-statmod): Update to 1.4.30.
2017-08-03 17:53:51 +02:00
80d1185076
gnu: r-gdata: Update to 2.18.0.
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* gnu/packages/statistics.scm (r-gdata): Update to 2.18.0.
2017-08-03 17:53:51 +02:00
2c75199c56
gnu: r-sfsmisc: Update to 1.1-1.
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* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-1.
2017-08-03 17:53:51 +02:00
1d256438c8
gnu: r-googlesheets: Update to 0.2.2.
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* gnu/packages/statistics.scm (r-googlesheets): Update to 0.2.2.
2017-08-03 17:53:50 +02:00
9b9fef0eaf
gnu: r-tidyr: Update to 0.6.3.
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* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.3.
2017-08-03 17:53:50 +02:00
e1cd25bc78
gnu: r-glmnet: Update to 2.0-10.
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* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-10.
2017-08-03 17:53:50 +02:00
1c576cbadb
gnu: r-irlba: Update to 2.2.1.
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* gnu/packages/statistics.scm (r-irlba): Update to 2.2.1.
2017-08-03 17:53:50 +02:00
81c057ced9
gnu: r-sparsem: Update to 1.77.
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* gnu/packages/statistics.scm (r-sparsem): Update to 1.77.
2017-08-03 17:53:50 +02:00
127b926bc1
gnu: r-segmented: Update to 0.5-2.1.
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* gnu/packages/statistics.scm (r-segmented): Update to 0.5-2.1.
2017-08-03 17:53:49 +02:00
fe9917284f
gnu: r-xml: Update to 3.98-1.9.
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* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.9.
2017-08-03 17:53:49 +02:00
cc8ba9b69c
gnu: r-rmarkdown: Update to 1.6.
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* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.6.
2017-08-03 17:53:49 +02:00
7c172eacfa
gnu: r-rcpparmadillo: Update to 0.7.900.2.0.
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* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.900.2.0.
2017-08-03 17:53:49 +02:00
1c41d51743
gnu: r-plotrix: Update to 3.6-5.
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* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-5.
2017-08-03 17:53:49 +02:00
76040b8561
gnu: r-readr: Update to 1.1.1.
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* gnu/packages/statistics.scm (r-readr): Update to 1.1.1.
2017-08-03 17:53:48 +02:00
d8048a1212
gnu: r-withr: Update to 2.0.0.
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* gnu/packages/statistics.scm (r-withr): Update to 2.0.0.
2017-08-03 17:53:48 +02:00
f212bf84ab
gnu: r-git2r: Update to 0.19.0.
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* gnu/packages/statistics.scm (r-git2r): Update to 0.19.0.
2017-08-03 17:53:48 +02:00
58e1ce86ab
gnu: r-checkmate: Update to 1.8.3.
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* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.3.
2017-08-03 17:53:48 +02:00
63f934e672
gnu: r-backports: Update to 1.1.0.
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* gnu/packages/statistics.scm (r-backports): Update to 1.1.0.
2017-08-03 17:53:48 +02:00
c832d326a1
gnu: r-formula: Update to 1.2-2.
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* gnu/packages/statistics.scm (r-formula): Update to 1.2-2.
2017-08-03 17:53:47 +02:00
f05c6275b7
gnu: r-r6: Update to 2.2.2.
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* gnu/packages/statistics.scm (r-r6): Update to 2.2.2.
2017-08-03 17:53:47 +02:00
b07c8c0156
gnu: r-knitr: Update to 1.16.
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* gnu/packages/statistics.scm (r-knitr): Update to 1.16.
2017-08-03 17:53:47 +02:00
6dc86e8dfc
gnu: r-formatr: Update to 1.5.
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* gnu/packages/statistics.scm (r-formatr): Update to 1.5.
2017-08-03 17:53:47 +02:00
12cd797541
gnu: r-evaluate: Update to 0.10.1.
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* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.1.
2017-08-03 17:53:47 +02:00
d5ce380711
gnu: r-dbi: Update to 0.7.
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* gnu/packages/statistics.scm (r-dbi): Update to 0.7.
2017-08-03 17:53:47 +02:00
831858a7d3
gnu: r-bit64: Update to 0.9-7.
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* gnu/packages/statistics.scm (r-bit64): Update to 0.9-7.
2017-08-03 17:53:46 +02:00
6fb21ed2a3
gnu: r-mgcv: Update to 1.8-18.
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* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-18.
2017-08-03 17:53:46 +02:00
dbeda1b4a0
gnu: r-matrix: Update to 1.2-10.
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* gnu/packages/statistics.scm (r-matrix): Update to 1.2-10.
2017-08-03 17:53:46 +02:00
74b037df64
gnu: r-foreign: Update to 0.8-69.
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* gnu/packages/statistics.scm (r-foreign): Update to 0.8-69.
2017-08-03 17:53:46 +02:00
af1eeabe89
gnu: r-boot: Update to 1.3-20.
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* gnu/packages/statistics.scm (r-boot): Update to 1.3-20.
2017-08-03 17:53:46 +02:00
e584b9fc1b
gnu: r-curl: Update to 2.8.1.
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* gnu/packages/web.scm (r-curl): Update to 2.8.1.
2017-08-03 17:53:45 +02:00
53deffe5e9
gnu: r-htmlwidgets: Update to 0.9.
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* gnu/packages/web.scm (r-htmlwidgets): Update to 0.9.
2017-08-03 17:53:45 +02:00
850151058d
gnu: r-htmltools: Update to 0.3.6.
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* gnu/packages/web.scm (r-htmltools): Update to 0.3.6.
2017-08-03 17:53:45 +02:00
a1e54db2ac
gnu: r-servr: Update to 0.6.
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* gnu/packages/web.scm (r-servr): Update to 0.6.
2017-08-03 17:53:45 +02:00
9fe794f0f7
gnu: r-jsonlite: Update to 1.5.
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* gnu/packages/web.scm (r-jsonlite): Update to 1.5.
2017-08-03 17:53:45 +02:00
2d81bc16a9
gnu: r-httpuv: Update to 1.3.5.
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* gnu/packages/web.scm (r-httpuv): Update to 1.3.5.
2017-08-03 17:53:44 +02:00
0f2eee0d96
gnu: r-pracma: Update to 2.0.7.
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* gnu/packages/maths.scm (r-pracma): Update to 2.0.7.
2017-08-03 17:53:44 +02:00
64c6712d03
gnu: r-knitrbootstrap: Update to 1.0.1.
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* gnu/packages/statistics.scm (r-knitrbootstrap): Update to 1.0.1.
2017-08-03 17:53:44 +02:00
c628b8418a
gnu: r-ranger: Update to 0.8.0.
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* gnu/packages/statistics.scm (r-ranger): Update to 0.8.0.
[propagated-inputs]: Add r-matrix and r-rcppeigen.
2017-08-03 17:53:44 +02:00
cc9a778ecc
gnu: r-hmisc: Update to 4.0-3.
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* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-3.
[propagated-inputs]: Remove r-base64.
2017-08-03 17:53:43 +02:00
f9b3760636
gnu: r-plotly: Update to 4.7.1.
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* gnu/packages/statistics.scm (r-plotly): Update to 4.7.1.
[propagated-inputs]: Add r-crosstalk, r-data-table, r-htmltools, and
r-rcolorbrewer.
2017-08-03 17:53:43 +02:00
d59050823e
gnu: r-igraph: Update to 1.1.2.
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* gnu/packages/statistics.scm (r-igraph): Update to 1.1.2.
[propagated-inputs]: Remove r-nmf; add r-matrix and r-pkgconfig.
2017-08-03 17:53:43 +02:00
7b3688150b
gnu: r-purrr: Update to 0.2.2.2.
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* gnu/packages/statistics.scm (r-purrr): Update to 0.2.2.2.
[propagated-inputs]: Remove r-bh and r-dplyr; add r-tibble.
2017-08-03 17:53:43 +02:00
5fc74f24bf
gnu: r-devtools: Update to 1.13.3.
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* gnu/packages/statistics.scm (r-devtools): Update to 1.13.3.
[propagated-inputs]: Remove r-curl, r-digest, r-evaluate, r-roxygen2, and
r-rversions.
2017-08-03 17:53:43 +02:00
aad948a0ea
gnu: r-tibble: Update to 1.3.3.
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* gnu/packages/statistics.scm (r-tibble): Update to 1.3.3.
[propagated-inputs]: Remove r-lazyeval, add r-rlang.
2017-08-03 17:53:43 +02:00
a40b2c2129
gnu: r-dplyr: Update to 0.7.2.
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* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.2.
[propagated-inputs]: Remove r-lazyeval, r-dbi; add r-rlang, r-plogr, r-glue,
r-pkgconfig, r-bindrcpp.
2017-08-03 17:53:42 +02:00
4bb0b4cc0a
gnu: Add r-bindrcpp.
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* gnu/packages/cran.scm (r-bindrcpp): New variable.
2017-08-03 17:53:42 +02:00
eed58a0886
gnu: Add r-bindr.
...
* gnu/packages/cran.scm (r-bindr): New variable.
2017-08-03 17:53:42 +02:00
a8cba9dd11
gnu: r-rcpp: Move to (gnu packages cran).
...
* gnu/packages/statistics.scm (r-rcpp): Move from here...
* gnu/packages/cran.scm (r-rcpp): ...to here.
2017-08-03 17:53:42 +02:00
736332c79c
gnu: r-rcpp: Update to 0.12.12.
...
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.12.
2017-08-03 17:53:42 +02:00
847b457253
gnu: r-plogr: Move to (gnu packages cran).
...
* gnu/packages/statistics.scm (r-plogr): Move from here...
* gnu/packages/cran.scm (r-plogr): ...to here.
2017-08-03 17:53:41 +02:00
5bee6bf409
gnu: Add r-glue.
...
* gnu/packages/cran.scm (r-glue): New variable.
2017-08-03 17:53:41 +02:00
dd4b7476ec
gnu: Add grub-hybrid.
...
* gnu/packages/bootloaders.scm (grub-hybrid): New variable.
2017-08-03 16:35:34 +02:00
75e6639f36
gnu: htseq: Use PyPI URI.
...
This is a follow-up to 92971d68ac
2017-08-03 21:08:13 +10:00
92971d68ac
gnu: htseq: Update to 0.9.1.
...
* gnu/packages/bioinformatics.scm (htseq): Update to 0.9.1.
[arguments]: Use python-3 by removing field.
[native-inputs]: Add 'python-cython'.
[propagated-inputs]: Use python3 numpy package.
[inputs]: Use python3 pysam package. Add 'python-matplotlib'.
(python2-htseq): New variable.
(clipper)[inputs]: Use it.
2017-08-03 21:02:30 +10:00
a8ead6f91b
gnu: vc: Limit to x86_64 and i686.
...
* gnu/packages/maths.scm (vc)[supported-systems]: New field.
2017-08-03 13:34:18 +03:00
5638d71502
gnu: openscenegraph: Add 'Release' configure flag.
...
* gnu/packages/graphics.scm (openscenegraph)[arguments]: Add "-DCMAKE_BUILD_TYPE=Release".
2017-08-03 10:35:31 +03:00
68a29ab8d0
gnu: Add LeoCAD.
...
* gnu/packages/lego.scm (leocad): New variable.
2017-08-03 00:33:02 -05:00
5d8312f1c6
gnu: youtube-dl: Update to 2017.07.30.1.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.07.30.1.
2017-08-03 05:31:24 +02:00
6862c72373
gnu: tor: Update to 0.3.0.10.
...
* gnu/packages/tor.scm (tor): Update to 0.3.0.10.
2017-08-03 01:56:22 +02:00
49962b15a1
activation: Make sure /etc exists.
...
Fixes <http://bugs.gnu.org/27146 >.
Reported by ng0 <ng0@pragmatique.xyz>.
* gnu/build/activation.scm (activate-etc): Add call to 'mkdir-p'.
2017-08-03 00:35:59 +02:00
edd08fb7ac
gnu: glibc@2.22: Fix security issues.
...
Fixes CVE-2015-{5180,7547}, CVE-2016-{3075,3706,4429}.
* gnu/packages/base.scm (glibc@2.22 )[source]: Add patches.
* gnu/packages/patches/glibc-CVE-2015-7547.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-02 21:51:35 +03:00
a0ae64a334
gnu: glibc@2.23: Fix CVE-2015-5180, CVE-2016-{3075,3706,4429}.
...
* gnu/packages/base.scm (glibc@2.23 )[source]: Add patches.
* gnu/packages/patches/glibc-CVE-2016-3075.patch,
gnu/packages/patches/glibc-CVE-2016-3706.patch,
gnu/packages/patches/glibc-CVE-2016-4429.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2017-08-02 21:51:33 +03:00
575e5e4e51
gnu: glibc@2.24: Fix CVE-2015-5180.
...
* gnu/packages/base.scm (glibc@2.24 )[source]: Add patch.
* gnu/packages/patches/glibc-CVE-2015-5180.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-02 21:51:31 +03:00
2c5cf84430
gnu: python2-conda: Fix build by building with enum34.
...
* gnu/packages/package-management.scm (python2-conda): Use 'python2-variant'.
[native-inputs]: Add python2-enum34.
2017-08-02 14:39:33 -04:00
9ef5940ce4
gnu: calibre: Add python2-msgpack as an input.
...
* gnu/packages/ebook.scm (calibre)[inputs]: Add python2-msgpack.
2017-08-02 20:20:12 +03:00
721d7a6912
gnu: gcc@4.7: Don't built on aarch64.
...
* gnu/packages/gcc.scm (gcc@4.7, gcc@4.8, gcc@4.9)[supported-systems]:
New field.
2017-08-02 19:14:26 +03:00
696f1d0fb1
gnu: libpng-apng: Be sure to apply the APNG patch.
...
* gnu/packages/image.scm (libpng-apng)[arguments]: Check the return status of
the patching procedures.
2017-08-02 11:17:57 -04:00
e0958c2df8
gnu: libpng-apng: Update to 1.6.28.
...
Fixes <https://bugs.gnu.org/27556 >.
* gnu/packages/image.scm (libpng-apng): Update to 1.6.28.
Remove inherit of 'libpng'.
[version]: Use own version, remove 'package-version libpng'.
[source]: Don't inherit the source of libpng.
[arguments]: Update hash of libpng-apng source.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-08-02 11:10:31 -04:00
33485fa913
gnu: eyed3: Update to 0.8, build with python3.
...
* gnu/packages/mp3.scm (eyed3): [source] Update to 0.8.
[arguments]: Disable tests; don't use python-2.
[propagated-inputs]: Add python-six and python-grako.
[native-inputs]: Remove.
2017-08-02 14:08:33 +02:00
a70b03d413
gnu: Add python-grako
...
* gnu/packages/python.scm (python-grako): New variable.
2017-08-02 14:08:33 +02:00
0abf526420
gnu: hdf4: Update to 4.12.13.
...
* gnu/packages/maths.scm (hdf4): Update to 4.12.13.
2017-08-02 14:08:24 +02:00
ced2d2b7ca
gnu: libvirt: Update to 3.6.0.
...
* gnu/packages/virtualization.scm (libvirt): Update to 3.6.0.
2017-08-02 07:15:21 +02:00
2e508b6dc0
gnu: libvirt: Use HTTPS.
...
* gnu/packages/virtualization.scm (libvirt)[source, home-page]: Use HTTPS.
2017-08-02 07:15:21 +02:00
2f06dc0435
gnu: Add r-rlang.
...
* gnu/packages/statistics.scm (r-rlang): New variable.
2017-08-02 00:57:39 +02:00
f1915a5dd0
gnu: r-deseq2: Update to 1.16.1.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.16.1.
2017-08-02 00:33:23 +02:00
fd215c2978
gnu: r-annotationforge: Update to 1.18.1.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.18.1.
2017-08-02 00:33:07 +02:00
bd4a0bab5f
gnu: r-category: Update to 2.42.1.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.42.1.
2017-08-02 00:32:46 +02:00
0ff478344b
gnu: r-biocstyle: Update to 2.4.1.
...
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.4.1.
2017-08-02 00:32:31 +02:00
9c4348d8c4
gnu: r-dnacopy: Update to 1.50.1.
...
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.50.1.
2017-08-02 00:32:11 +02:00
3ec25eb2a8
gnu: r-iranges: Update to 2.10.2.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.10.2.
2017-08-02 00:31:46 +02:00
6252dd0f15
gnu: r-genomeinfodb: Update to 1.12.2.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.12.2.
2017-08-02 00:31:28 +02:00
48f5d283b2
gnu: r-variantannotation: Update to 1.22.3.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.22.3.
2017-08-02 00:31:08 +02:00
1b4738e23c
gnu: r-limma: Update to 3.32.5.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.32.5.
2017-08-02 00:30:49 +02:00
1898a7832f
gnu: r-biobase: Update to 2.36.2.
...
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.36.2.
2017-08-02 00:30:27 +02:00
62eb93a7d0
gnu: r-annotationdbi: Update to 1.38.2.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.38.2.
2017-08-02 00:28:32 +02:00
0c6494a1db
gnu: r-biomart: Update to 2.32.1.
...
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.32.1.
2017-08-02 00:28:16 +02:00
1ff74d074e
gnu: r-biocparallel: Update to 1.10.1.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.10.1.
2017-08-02 00:27:57 +02:00
5077bc3e2e
gnu: r-biostrings: Update to 2.44.2.
...
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.44.2.
2017-08-02 00:27:35 +02:00
adf5d0a0bc
gnu: r-delayedarray: Update to 0.2.7.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.2.7.
2017-08-02 00:27:16 +02:00
f41150f13d
gnu: r-summarizedexperiment: Update to 1.6.3.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.6.3.
2017-08-02 00:26:55 +02:00
26760c80cd
gnu: r-genomicalignments: Update to 1.12.1.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.1.
2017-08-02 00:26:33 +02:00
15afa9bf8f
gnu: r-rtracklayer: Update to 1.36.4.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.36.4.
2017-08-02 00:26:00 +02:00
8cfaa9ab4e
gnu: r-genomicfeatures: Update to 1.28.4.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.28.4.
2017-08-02 00:25:26 +02:00
9eb2714625
gnu: r-copywriter: Update to 2.8.1.
...
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.8.1.
2017-08-02 00:25:00 +02:00
bfa0d1e773
gnu: r-sva: Update to 3.24.4.
...
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.24.4.
2017-08-02 00:24:27 +02:00
8060a61798
gnu: r-rsqlite: Update to 2.0.
...
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.0.
2017-08-02 00:23:16 +02:00
796237a9a4
gnu: Add r-blob.
...
* gnu/packages/statistics.scm (r-blob): New variable.
2017-08-02 00:22:33 +02:00
aa184803f8
gnu: Add r-pkgconfig.
...
* gnu/packages/statistics.scm (r-pkgconfig): New variable.
2017-08-02 00:21:40 +02:00
aa9780daf9
Merge branch 'master' into core-updates
2017-08-01 23:42:28 +02:00
fc8f0631b4
gnu: re2: Update to 2017-08-01.
...
* gnu/packages/regex.scm (re2): Update to 2017-08-01.
2017-08-01 23:37:20 +02:00
1926fd2baa
gnu: maim: Update to 5.4.66.
...
* gnu/packages/xdisorg.scm (maim): Update to 5.4.66.
2017-08-01 23:35:31 +02:00
7d960db1e3
gnu: slop: Update to 7.3.48.
...
* gnu/packages/xdisorg.scm (slop): Update to 7.3.48.
2017-08-01 23:35:03 +02:00
b73e49f595
gnu: git: Update to 2.13.4.
...
* gnu/packages/version-control.scm (git): Update to 2.13.4.
2017-08-01 23:34:41 +02:00
14fce399cc
gnu: r-foreign: Update hash after upstream tarball change.
...
* gnu/packages/statistics.scm (r-foreign): Update hash. The only difference
in the tarball is the metadata. The contents are identical.
2017-08-01 23:07:58 +02:00
cdf124c607
gnu: r-foreign: Remove duplicate recipe.
...
* gnu/packages/statistics.scm (r-foreign): Remove duplicate recipe.
2017-08-01 23:06:02 +02:00
d0386db493
gnu: rapidjson: Update to 1.1.0.
...
* gnu/packages/web.scm (rapidjson): Update to 1.1.0.
[source]: Remove snippet.
2017-08-01 14:42:44 -04:00
f2e1271809
gnu: Add pidentd.
...
* gnu/packages/networking.scm (pidentd): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-08-01 20:57:51 +03:00
89c9445aa2
gnu: hyperrogue: Update to 10.0e.
...
* gnu/packages/games.scm (hyperrogue): Update to 10.0e.
[arguments]: Adjust accordingly.
2017-08-01 12:14:54 -04:00
d931a4bbeb
gnu: metabat: Limit to x86_64 and i686 only.
...
* gnu/packages/bioinformatics.scm (metabat)[supported-systems]: New field.
2017-08-01 17:28:35 +03:00
4bfdf034e2
gnu: Add emacs-yasnippet-snippets.
...
* gnu/packages/emacs.scm (emacs-yasnippet-snippets): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-01 15:33:07 +02:00
1f0d47059d
gnu: emacs-yasnippet: Upgrade to 0.12.0.
...
* gnu/packages/emacs.scm (emacs-yasnippet): Upgrade to 0.12.0.
[source]: Remove an uninstalled directory from yas-snippet-dirs.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-01 15:32:59 +02:00
04b6d6f7f7
gnu: guile-ssh: Update to 0.11.2.
...
* gnu/packages/ssh.scm (guile-ssh): Update to 0.11.2.
[source]: Remove 'patches', 'modules', and 'snippet'.
* gnu/packages/patches/guile-ssh-channel-finalization.patch,
gnu/packages/patches/guile-ssh-double-free.patch,
gnu/packages/patches/guile-ssh-rexec-bug.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-08-01 15:32:07 +02:00
12235a124f
gnu: artanis: Unbundled guile-json and version according to documentation.
...
* gnu/packages/guile.scm (artanis): Unbundled guile-json and version
according to documentation.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-01 15:32:07 +02:00
269504a797
gnu: python-pbr-minimal: Update to 3.0.1
...
* gnu/packages/python.scm (python-pbr-minimal): Update to 3.0.1
[source]: Update hash and remove patch.
* gnu/packages/patches/python-pbr-fix-man-page-support.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-08-01 15:21:52 +03:00
3d0fbd3c2f
gnu: libgit2: Enable SHA-1 collision detection.
...
* gnu/packages/version-control.scm (libgit2)[arguments]: Enable '-DUSE_SHA1DC'
in #:configure-flags.
2017-08-01 01:02:53 -04:00
befb2c0e6e
gnu: ruby-bio-commandeer: Update to 0.2.0.
...
* gnu/packages/ruby.scm (ruby-bio-commandeer): Update to 0.2.0.
2017-08-01 14:09:07 +10:00
e1ecc8908e
gnu: libmicrohttpd: Update to 0.9.55.
...
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.55.
[arguments]: Add 'add-missing-LDFLAGS' phase.
2017-07-31 22:51:34 +02:00
a6b5af0cff
gnu: xf86-video-intel: Update snapshot.
...
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2100efa.
Introduce 'revision' variable.
2017-07-31 22:10:34 +02:00
Ludovic Courtès