Commit Graph

19575 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice 7c94a3599e
gnu: totem-pl-parser: Update to 3.10.8.
* gnu/packages/gnome.scm (totem-pl-parser): Update to 3.10.8.
2017-08-18 14:54:59 +02:00
Tobias Geerinckx-Rice 94793c1d0a
gnu: perl-crypt-openssl-bignum: Update to 0.08.
* gnu/packages/tls.scm (perl-crypt-openssl-bignum): Update to 0.08.
2017-08-18 14:54:59 +02:00
Thomas Danckaert 598b5481a4
gnu: freerdp: Update inputs.
* gnu/packages/rdesktop.scm (freerdp) [native-inputs]: Add libxslt, libxml2
  and docbook-xsl.
  [inputs]: Add libjpeg, remove gstreamer, gst-plugins-base, libxml2 and
  libxslt.
  [arguments]: Enable features JPEG and SSE2 (on x86_64), and set up
  docbook-xsl.
2017-08-18 14:52:35 +02:00
Thomas Danckaert cc81f1c349
gnu: freerdp: Revert to version 1.1.
* gnu/packages/rdesktop.scm (freerdp) [version, source]: Revert to upstream
  branch 1.1.  [inputs]: Use ffmpeg-2.8.
* gnu/packages/gnome.scm (vinagre): Add patches required to build against
  freerdp branch 1.1.
* gnu/packages/patches/vinagre-revert-1.patch,
  gnu/packages/patches/vinagre-revert-2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2017-08-18 14:52:35 +02:00
Efraim Flashner c5a856d551
gnu: xf86-video-siliconmotion: Fix building on aarch64.
* gnu/packages/xorg.scm (xf86-video-siliconmotion)[source]: Add patch.
* gnu/packages/patches/xf86-video-siliconmotion-fix-ftbfs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-18 15:50:25 +03:00
Efraim Flashner d983a1cb8e
gnu: libksysguard: Update to 5.10.4.
* gnu/packages/kde.scm (libksysguard ): Update to 5.10.4.
2017-08-18 15:50:23 +03:00
Efraim Flashner de5a235c79
gnu: kde-framework: Update to 5.37.0.
* gnu/packages/kde-frameworks.scm (extra-cmake-modules, attica,
bluez-qt, breeze-icons, kapidox, karchive, kcodecs, kconfig,
kcoreaddons, kdbusaddons, kdnssd, kguiaddons, kil8n, kidletime,
kitemmodules, kplotting, ksyntaxhighlighting, kwayland, kwidgetsaddons,
kwindowsystem, modemmanager-qt, networkmanager-qt, oxygen-icons, solid,
sonnet, threadweaver, kauth, kcompletion, kcrash, kimageformats,
kjobwidgets, knotifications, kpackage, kpty, kunitconversion, baloo,
kactivities, kactivities-stats, kbookmarks, kcmutils, kconfigwidgets,
kdeclarative, kded, kdesignerplugin, kdesu, kemoticons, kglobalaccel,
kiconthemes, kinit, kio, knewstuff, knotifyconfig, kparts, kpeople,
krunner, kservice, ktexteditor, ktextwidgets, kwallet, kxmlgui,
kxmlrpcclient, plasma-framework, kde-framworkintegration,
kdelibs4support, khtml, kjs, kjsembed, kmediaplayer, kross): Update to 5.37.0.
(bluez-qt)[arguments]: Disable tests.
(kcodecs, khtml)[native-inputs]: Add gperf.
(ksyntaxhighlighting)[properties]: New field, add upstream-name.
(kimageformats, baloo)[arguments]: Add phase to disable failing test.
(krunner)[inputs]: Add kwindowsystem.
2017-08-18 15:50:22 +03:00
Efraim Flashner 26ca43bb60
gnu: freeipmi: Update to 1.5.7.
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.5.7.
2017-08-18 15:50:20 +03:00
Nicolas Goaziou 1286ff6161
gnu: giac-xcas: Update to 1.2.3-57.
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.3-57.
2017-08-18 14:31:06 +02:00
Arun Isaac c5361b7c3d
gnu: Add rtl-sdr.
* gnu/packages/ham-radio.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ham-radio.scm (rtl-sdr): New variable.
2017-08-18 16:54:58 +05:30
Tobias Geerinckx-Rice 2559401037
gnu: youtube-dl: Update to 2017.08.18.
* gnu/packages/video.scm (youtube-dl): Update to 2017.08.18.
2017-08-18 08:11:45 +02:00
Tobias Geerinckx-Rice 2c7321eaa7
gnu: libconfuse: Update to 3.2.1.
* gnu/packages/wm.scm (libconfuse): Update to 3.2.1.
2017-08-18 08:11:45 +02:00
Eric Bavier 623cc34cd2
gnu: rpm: Update to 4.13.0.1.
* gnu/packages/package-management.scm (rpm): Update to 4.13.0.1
[source]: Remove patch.  Use 'version-major+minor' for url.
* gnu/packages/patches/rpm-CVE-2014-8118.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-17 21:39:18 -05:00
Arun Isaac 52d445f130
gnu: Add rss-bridge.
* gnu/packages/web.scm (rss-bridge): New variable.
2017-08-18 07:18:04 +05:30
Marius Bakke 961012a0a0
gnu: Add missing import.
This is a followup to d016b60fa3.

* gnu/packages/networking.scm (gnu): Use (gnu packages glib).
2017-08-18 00:48:25 +02:00
Dave Love a099570249
gnu: openmpi: Add RDMA and libfabric support.
* gnu/packages/mpi.scm (openmpi)[inputs]: Add rdma-core, libfabric.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-18 00:36:28 +02:00
Dave Love ae5947b0ef
gnu: Add libfabric.
* gnu/packages/linux.scm (libfabric): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-18 00:36:28 +02:00
Dave Love 3eb7c00038
gnu: libnl: Add "python2" and "python3" outputs.
* gnu/packages/linux.scm (libnl)[native-inputs]: Add SWIG and PKG-CONFIG.
[inputs]: Add PYTHON-2 and PYTHON-3.
[outputs]: Add python2, python3.
[arguments]: Add 'install-python' phase.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2017-08-18 00:36:27 +02:00
Dave Love d80a47f2f5
gnu: libnl: Add "doc" output.
* gnu/packages/linux.scm (libnl)[native-inputs]: Add doc origin.
[outputs]: New field.
[arguments]: Add 'install-doc' phase. New field.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2017-08-18 00:36:27 +02:00
Nicolas Goaziou d016b60fa3
gnu: wireshark: Update to 2.4.0.
* gnu/packages/networking.scm (wireshark): Update to 2.4.0.  Add "libssh",
  "libxml2", "qtbase" and "qttools" as inputs.  Remove unused "bison", "flex"
  and "gtk+" inputs.
2017-08-18 00:17:24 +02:00
Marius Bakke 9fa0c0e6fa
gnu: libmspack: Update to 0.6 [fixes CVE-2017-{6419,11423}].
* gnu/packages/compression.scm (libmspack): Update to 0.6.
2017-08-17 22:32:51 +02:00
Mark H Weaver 2d72ddf529
gnu: linux-libre: Update to 4.12.8.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.8.
(%linux-libre-hash): Update hash.
2017-08-17 14:41:18 -04:00
Mark H Weaver 1e070766c0
gnu: linux-libre@4.9: Update to 4.9.44.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.44.
2017-08-17 14:40:29 -04:00
Mark H Weaver 821f18719d
gnu: linux-libre@4.4: Update to 4.4.83.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.83.
2017-08-17 14:39:31 -04:00
Christopher Baines f2d7a492df
web: Check for the existance of SSL related files.
This adds back the previous behaviour of the nginx-service-type, where the
service would check at the time when the configuration is generated if the SSL
certificate and certificate key file exists.

* gnu/services/web.scm (emit-nginx-server-config): Add back check for SSL
  related files.
2017-08-17 18:32:27 +01:00
Andy Wingo c9aa261be4
gnu: services: Nginx configs can reference store
* gnu/services/web.scm (config-domain-strings, config-index-strings): Emit
lists instead of strings.
(emit-nginx-location-config, emit-nginx-server-config)
(emit-nginx-upstream-config): Rename from nginx-location-config,
default-nginx-server-config, and nginx-upstream-config.  Emit lists instead of
strings.
(flatten): New helper.
(default-nginx-config): Use flatten helper to write nginx conf.  This allows
location configs to reference store values.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-08-17 18:32:23 +01:00
Manolis Ragkousis e9a599cdce
gnu: Add OpenMW.
* gnu/packages/game-development.scm (openmw): New variable.
2017-08-17 19:40:33 +03:00
Manolis Ragkousis 42d0d13de8
gnu: Add mygui.
* gnu/packages/game-development.scm (mygui): New variable.
2017-08-17 19:35:28 +03:00
Manolis Ragkousis dd75a9a22c
gnu: Add ogre.
* gnu/packages/graphics.scm (ogre): New variable.
2017-08-17 19:11:35 +03:00
Ricardo Wurmus bf3fa99654
gnu: Add r-methylkit.
* gnu/packages/bioinformatics.scm (r-methylkit): New variable.
2017-08-17 18:00:17 +02:00
Ricardo Wurmus 8a39e4a553
gnu: sassc: Update to 3.4.5.
* gnu/packages/web.scm (sassc): Update to 3.4.5.
[arguments]: Add PREFIX to make-flags, disable tests, remove custom install
phase.
2017-08-17 18:00:17 +02:00
Alex Vong f30ff28b96
gnu: mariadb: Update to 10.1.26 [fixes CVE-2017-{3636,3641,3653}].
* gnu/packages/databases.scm (mariadb): Update to 10.1.26.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-08-17 11:40:29 -04:00
Ricardo Wurmus 05e8a3ef0f
gnu: Add r-ksamples.
* gnu/packages/cran.scm (r-ksamples): New variable.
2017-08-17 17:26:13 +02:00
Ricardo Wurmus abcb849405
gnu: Add r-suppdists.
* gnu/packages/cran.scm (r-suppdists): New variable.
2017-08-17 17:26:12 +02:00
Ricardo Wurmus 8d22007380
gnu: Add r-energy.
* gnu/packages/cran.scm (r-energy): New variable.
2017-08-17 17:26:12 +02:00
Ricardo Wurmus 6b4a9aec23
gnu: Add r-fitdistrplus.
* gnu/packages/cran.scm (r-fitdistrplus): New variable.
2017-08-17 17:26:12 +02:00
Ricardo Wurmus 521e0703d8
gnu: Add r-limsolve.
* gnu/packages/cran.scm (r-limsolve): New variable.
2017-08-17 17:26:12 +02:00
Ricardo Wurmus a3e36d3772
gnu: Add r-lpsolve.
* gnu/packages/cran.scm (r-lpsolve): New variable.
2017-08-17 17:26:12 +02:00
Ricardo Wurmus 212f612040
gnu: Add r-qvalue.
* gnu/packages/bioinformatics.scm (r-qvalue): New variable.
2017-08-17 17:26:12 +02:00
Ricardo Wurmus d4a1e918cb
gnu: Add r-fastseg.
* gnu/packages/bioinformatics.scm (r-fastseg): New variable.
2017-08-17 17:26:11 +02:00
Ricardo Wurmus b31e4a9693
gnu: Add r-emdbook.
* gnu/packages/cran.scm (r-emdbook): New variable.
2017-08-17 17:26:11 +02:00
Ricardo Wurmus 97cb349dc1
gnu: r-trimcluster: Update license.
* gnu/packages/statistics.scm (r-trimcluster)[license]: Also specify GPLv3+.
2017-08-17 17:26:11 +02:00
Ricardo Wurmus 8c72b83096
gnu: Add r-bbmle.
* gnu/packages/cran.scm (r-bbmle): New variable.
2017-08-17 17:26:11 +02:00
Ricardo Wurmus d6b156dc04
gnu: Add r-inline.
* gnu/packages/cran.scm (r-inline): New variable.
2017-08-17 17:26:11 +02:00
Ricardo Wurmus 062b6dbd25
gnu: Add r-lmtest.
* gnu/packages/cran.scm (r-lmtest): New variable.
2017-08-17 17:26:11 +02:00
Ricardo Wurmus 58db98c9f2
gnu: Add r-extremes.
* gnu/packages/cran.scm (r-extremes): New variable.
2017-08-17 17:26:10 +02:00
Ricardo Wurmus 28476b4bc0
gnu: Add r-distillery.
* gnu/packages/cran.scm (r-distillery): New variable.
2017-08-17 17:26:10 +02:00
Ricardo Wurmus 6427e62005
gnu: Add r-lmoments.
* gnu/packages/cran.scm (r-lmoments): New variable.
2017-08-17 17:26:10 +02:00
Ricardo Wurmus e389d10f55
gnu: Add r-rmtstat.
* gnu/packages/cran.scm (r-rmtstat): New variable.
2017-08-17 17:26:10 +02:00
Ricardo Wurmus b723dedf81
gnu: Add r-rook.
* gnu/packages/web.scm (r-rook): New variable.
2017-08-17 17:26:10 +02:00
Ricardo Wurmus bc0081e76f
gnu: Add r-sp.
* gnu/packages/cran.scm (r-sp): New variable.
2017-08-17 17:26:10 +02:00
Ricardo Wurmus 3349faecf5
gnu: Add r-proxy.
* gnu/packages/cran.scm (r-proxy): New variable.
2017-08-17 17:26:10 +02:00
Ricardo Wurmus ac8402072b
gnu: Add r-ggally.
* gnu/packages/cran.scm (r-ggally): New variable.
2017-08-17 17:26:09 +02:00
Ricardo Wurmus c9c6f4b543
gnu: Add r-progress.
* gnu/packages/cran.scm (r-progress): New variable.
2017-08-17 17:26:09 +02:00
Ricardo Wurmus 71be51d531
gnu: Add r-reshape.
* gnu/packages/cran.scm (r-reshape): New variable.
2017-08-17 17:26:09 +02:00
Ricardo Wurmus 18a16ceb7c
gnu: Add r-prettyunits.
* gnu/packages/cran.scm (r-prettyunits): New variable.
2017-08-17 17:26:09 +02:00
Ricardo Wurmus 49c9c29790
gnu: Add r-ffbase.
* gnu/packages/cran.scm (r-ffbase): New variable.
2017-08-17 17:26:09 +02:00
Ricardo Wurmus a7f0faa204
gnu: Add r-ff.
* gnu/packages/cran.scm (r-ff): New variable.
2017-08-17 17:26:09 +02:00
Ricardo Wurmus f2e974e1a2
gnu: Add r-fastmatch.
* gnu/packages/cran.scm (r-fastmatch): New variable.
2017-08-17 17:26:09 +02:00
Ricardo Wurmus e0268ff2e4
gnu: Add r-getoptlong.
* gnu/packages/cran.scm (r-getoptlong): New variable.
2017-08-17 17:26:08 +02:00
Ricardo Wurmus d3c67e1b45
gnu: Add r-dendextend.
* gnu/packages/cran.scm (r-dendextend): New variable.
2017-08-17 17:26:08 +02:00
Ricardo Wurmus 0548660420
gnu: Add r-compare.
* gnu/packages/cran.scm (r-compare): New variable.
2017-08-17 17:26:08 +02:00
Ricardo Wurmus eb60149eee
gnu: Add r-png.
* gnu/packages/image.scm (r-png): New variable.
2017-08-17 17:26:08 +02:00
Ricardo Wurmus 5cc79c9c50
gnu: Add r-powerlaw.
* gnu/packages/cran.scm (r-powerlaw): New variable.
2017-08-17 17:25:47 +02:00
Ricardo Wurmus 2856369fad
gnu: Add r-circlize.
* gnu/packages/cran.scm (r-circlize): New variable.
2017-08-17 17:25:47 +02:00
Ricardo Wurmus 4847a62ea9
gnu: Add r-globaloptions.
* gnu/packages/cran.scm (r-globaloptions): New variable.
2017-08-17 17:25:47 +02:00
Ricardo Wurmus 2bdb5c3f78
gnu: Add r-shape.
* gnu/packages/cran.scm (r-shape): New variable.
2017-08-17 17:25:47 +02:00
Ricardo Wurmus c69d27db57
gnu: Add r-calibrate.
* gnu/packages/cran.scm (r-calibrate): New variable.
2017-08-17 17:25:47 +02:00
Ricardo Wurmus 33ce12e293
gnu: Add r-auc.
* gnu/packages/cran.scm (r-auc): New variable.
2017-08-17 17:25:47 +02:00
Ricardo Wurmus 4a007ffafe
gnu: Add r-annotationhub.
* gnu/packages/bioinformatics.scm (r-annotationhub): New variable.
2017-08-17 17:25:47 +02:00
Ricardo Wurmus 5f96f30f5d
gnu: Add r-interactivedisplaybase.
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): New variable.
2017-08-17 17:25:46 +02:00
Efraim Flashner a71fd67175
gnu: american-fuzzy-lop: Update to 2.49b.
* gnu/packages/debug.scm (american-fuzzy-lop): Update to 2.49b.
2017-08-17 18:17:00 +03:00
Efraim Flashner aacefef222
gnu: american-fuzzy-lop: Add support for non-Intel architectures.
* gnu/packages/debug.scm (americal-fuzzy-lop): Add qemu target for
non-Intel targets.
[arguments]: On non-Intel systems, add phase to disable non-Intel
architecture warning and remove incompatible binaries.
2017-08-17 18:16:57 +03:00
Nicolas Goaziou 721e1987d0
gnu: Add mgba.
* gnu/packages/games.scm (mgba): New public variable.
2017-08-17 10:56:04 +02:00
Ricardo Wurmus a6d05444ab
gnu: cuirass: Update to 0.0.1-7.6f85bc0.
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-7.6f85bc0.
[arguments]: Add guile-git and guile-bytestructures to the load path.
[inputs]: Remove git, add guile-git and guile-bytestructures.
2017-08-17 09:12:46 +02:00
Efraim Flashner e3b861ce38
gnu: python-cython: Update to 0.26.
* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.26.
[source]: Remove patch.
* gnu/packages/patches/python-cython-fix-tests-32bit.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-17 06:46:06 +03:00
Danny Milosavljevic d6ef422fe7
gnu: Add fbreader.
* gnu/packages/ebook.scm (fbreader): New variable.
2017-08-17 02:00:51 +02:00
Danny Milosavljevic 84a52639c9
gnu: Add liblinebreak.
* gnu/packages/ebook.scm (liblinebreak): New variable.
2017-08-17 01:56:38 +02:00
Tobias Geerinckx-Rice f73f1f0769
gnu: python-cryptography-vectors: Update to 2.0.3.
* gnu/packages/python.scm (python-cryptography-vectors): Update to 2.0.3.
2017-08-16 22:35:11 +02:00
Tobias Geerinckx-Rice f37995fa20
gnu: python-cryptography: Update to 2.0.3.
* gnu/packages/python.scm (python-cryptography): Update to 2.0.3.
2017-08-16 22:35:10 +02:00
Tobias Geerinckx-Rice f886e7cab1
gnu: limnoria: Update to 2017.08.03.
* gnu/packages/irc.scm (limnoria): Update to 2017.08.03.
2017-08-16 22:35:10 +02:00
Tobias Geerinckx-Rice e2a4c13023
gnu: cbatticon: Update to 1.6.6.
* gnu/packages/admin.scm (cbatticon): Update to 1.6.6.
2017-08-16 22:35:10 +02:00
Julien Lepiller f207984985
gnu: Add gpick.
* gnu/packages/image.scm (gpick): New variable.
2017-08-16 21:37:33 +03:00
ng0 d0b13d7b9b
gnu: fossil: Update to 2.2.
* gnu/packages/version-control.scm (fossil): Update to 2.2.
[source]: Add uri for older versions.
[arguments]: Enable previously disabled test.
2017-08-16 21:37:32 +03:00
Efraim Flashner ab1bd285db
gnu: connman: Update to 1.35.
* gnu/packages/connman.scm (connman): Update to 1.35.
2017-08-16 21:37:29 +03:00
Kei Kebreau e664200c0c
gnu: Add ltris.
* gnu/packages/games.scm (ltris): New variable.
2017-08-16 11:28:12 -04:00
Alex Vong af4db693db
gnu: Add ghc-gitrev.
* gnu/packages/haskell.scm (ghc-gitrev): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
Alex Vong e0ca14c7a8
gnu: Add ghc-geniplate-mirror.
* gnu/packages/haskell.scm (ghc-geniplate-mirror): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
Alex Vong 298af2a8da
gnu: Add ghc-monadplus.
* gnu/packages/haskell.scm (ghc-monadplus): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
Alex Vong 005a08e3dc
gnu: Add ghc-fail.
* gnu/packages/haskell.scm (ghc-fail): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
Alex Vong 1eced2a7a8
gnu: Add ghc-edisoncore.
* gnu/packages/haskell.scm (ghc-edisoncore): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
Alex Vong 212ae09541
gnu: Add ghc-edisonapi.
* gnu/packages/haskell.scm (ghc-edisonapi): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
Alex Vong a623fd7fed
gnu: Add ghc-murmur-hash.
* gnu/packages/haskell.scm (ghc-murmur-hash): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:38 +02:00
Alex Vong ca48a34594
gnu: Add ghc-data-hash.
* gnu/packages/haskell.scm (ghc-data-hash): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:38 +02:00
Efraim Flashner adcb30642c
gnu: pspp: Update to 0.11.0.
This fixes CVE-2017-10791, CVE-2017-10792.

* gnu/packages/statistics.scm (pspp): Update to 0.11.0.
2017-08-16 17:57:40 +03:00
Alex Vong 96f23b62e0
gnu: Add ghc-equivalence.
* gnu/packages/haskell.scm (ghc-equivalence): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:13 +02:00
Alex Vong 3f8b8e731c
gnu: Add ghc-boxes.
* gnu/packages/haskell.scm (ghc-boxes): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:13 +02:00
Alex Vong be04f8020a
gnu: Add ghc-edit-distance.
* gnu/packages/haskell.scm (ghc-edit-distance): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:13 +02:00
Alex Vong 867ed9776c
gnu: Add ghc-stmonadtrans.
* gnu/packages/haskell.scm (ghc-stmonadtrans): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:12 +02:00
Alex Vong f99a57dc28
gnu: Add ghc-strict.
* gnu/packages/haskell.scm (ghc-strict): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:12 +02:00
Alex Vong c12562e1e8
gnu: cpphs: Update to 1.20.8.
* gnu/packages/haskell.scm (cpphs): Update to 1.20.8.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:08 +02:00
ng0 2f7966c8e2
gnu: font-google-noto: Use font-build-system.
* gnu/packages/fonts.scm (font-google-noto)[build-system]: Use
font-build-system.
[source]: Use url-fetch/zipbomb.
[arguments]: Remove it.
[native-inputs]: Remove it.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:18:50 +02:00
Efraim Flashner d534f3a4d3
gnu: r-mzr: Fix building on aarch64 and armhf.
* gnu/packages/bioinformatics.scm (r-mzr)[inputs]: Add boost.
2017-08-16 12:36:25 +03:00
Efraim Flashner 953a12fa9b
gnu: hdf4: Fix building on aarch64.
* gnu/packages/maths.scm (hdf4)[arguments]: Add a phase to improve
detection and support for aarch64-linux.
2017-08-16 09:33:11 +03:00
Leo Famulari 8343d373d5
gnu: cgit: Don't build cgit's special 'git:src' input.
This special version of Git is only used within the build process of
cgit. We don't need to build it otherwise, so the package is removed
with this commit.

* gnu/packages/version-control.scm (cgit)[inputs]: Replace the git@2.10
package with an origin reference of the source code.
(git@2.10): Remove variable.
2017-08-15 17:59:22 -04:00
Christopher Baines 6230e155af
gnu: Fix memcached service startup.
Memcached changes to the memcached user from root before writing the PID
file. This means that it must be able to write the PID file as the memcached
user.

To make this work, create the /var/run/memcached directory when the service
starts, make it owned by memcached, and change memcached to write the PID file
to /var/run/memcached/pid.

This wasn't picked up by the system test as the "service running" part was too
permissive, and only failed on an error. Instead, test the response from
calling start-service and check that the PID is a number.

* gnu/services/databases.scm (memcached-activation): New variable.
  (memcached-shepherd-service): Change PID file location.
  (memcached-service-type): Extend the activation-service-type.
* gnu/tests/databases.scm (run-memcached-test)[test]: Change the "service
  running" test to check the response from the shepherd.
2017-08-15 22:24:15 +01:00
Danny Milosavljevic 2434f5cedf
gnu: Add dssi.
* gnu/packages/music.scm (dssi): New variable.
2017-08-15 20:58:03 +02:00
Oleg Pykhalov 425d66f7a7
gnu: Add emacs-highlight-symbol.
* gnu/packages/emacs.scm (emacs-highlight-symbol): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-15 20:52:58 +02:00
ng0 be69176bbd
gnu: fish-guix: Use new download URL.
* gnu/packages/shells.scm (fish-guix)[source]: Adjust the download URL.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-15 20:41:23 +02:00
Marius Bakke dca82aefbc
gnu: p11-kit: Update to 0.23.8.
* gnu/packages/tls.scm (p11-kit): Update to 0.23.8.
2017-08-15 20:38:02 +02:00
Leo Famulari 6550e5ad64
gnu: signify: Update to 22.
* gnu/packages/crypto.scm (signify): Update to 22.
2017-08-15 13:27:30 -04:00
Ben Woodcroft 06f31e50b1
gnu: diamond: Update to 0.9.10.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.10.
2017-08-15 18:49:33 +10:00
Efraim Flashner 3837108e40
gnu: bcftools: Fix building on aarch64.
* gnu/packages/patches/bcftools-regidx-unsigned-char.patch: New file.
* gnu/packages/bioinformatics.scm (bcftools)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-15 10:31:20 +03:00
Mark H Weaver 09ec5a0f0c
Merge branch 'master' into core-updates 2017-08-15 03:10:14 -04:00
Efraim Flashner 2d430f2923
Revert "gnu: pspp: Update to 0.11.0."
This FTBFS on x86_64 and i686.

This reverts commit f4c808df5b.
2017-08-15 10:03:40 +03:00
Tobias Geerinckx-Rice 14f366e58d
gnu: youtube-dl: Update to 2017.08.13.
* gnu/packages/video.scm (youtube-dl): Update to 2017.08.13.
2017-08-15 01:42:49 +02:00
Marius Bakke f28fea1ca7
gnu: e2fsprogs: Update to 1.43.5.
* gnu/packages/patches/e2fsprogs-32bit-quota-warnings.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/linux.scm (e2fsprogs): Update to 1.43.5.
[source]: Use patch.
2017-08-15 01:08:01 +02:00
Leo Famulari 15428168ea
gnu: cvs: Fix CVE-2017-12836.
* gnu/packages/patches/cvs-2017-12836.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/version-control.scm (cvs)[source]: Use it.
2017-08-14 15:55:31 -04:00
Marius Bakke 36bfcf7e3a
gnu: git@2.10: Update to 2.10.4 [fixes CVE-2017-1000117].
...also disable tests, since they broke after c9f4f56b24.

* gnu/packages/version-control.scm (git@2.10): Update to 2.10.4.
[arguments]: New field.
2017-08-14 21:44:24 +02:00
Efraim Flashner 2bccf1c0ec
gnu: gcc@7: Update to 7.2.0.
* gnu/packages/gcc.scm (gcc@7): Update to 7.2.0.
[source]: Switch to xz compression.
2017-08-14 22:30:07 +03:00
Marius Bakke a547a6d560
Revert "gnu: e2fsprogs: Update to 1.43.5."
Fails to build on i686:
<https://lists.gnu.org/archive/html/guix-devel/2017-08/msg00118.html>

This reverts commit 3ddaa7922b.
2017-08-14 21:22:12 +02:00
Kei Kebreau 1faf081b47
gnu: milkytracker: Update to 1.01.00.
* gnu/packages/music.scm (milkytracker): Update to 1.01.00.
2017-08-14 14:26:15 -04:00
Ricardo Wurmus 9634804890
gnu: Add bismark.
* gnu/packages/bioinformatics.scm (bismark): New variable.
2017-08-14 12:00:56 +02:00
Ricardo Wurmus 86763fdd70
gnu: Add r-dexseq.
* gnu/packages/bioinformatics.scm (r-dexseq): New variable.
2017-08-14 12:00:51 +02:00
Ricardo Wurmus 233f4f43bf
gnu: Add perl-math-random-secure.
* gnu/packages/crypto.scm (perl-math-random-secure): New variable.
2017-08-14 11:50:42 +02:00
Ricardo Wurmus 2023b79f59
gnu: Add perl-crypt-random-source.
* gnu/packages/crypto.scm (perl-crypt-random-source): New variable.
2017-08-14 11:50:13 +02:00
Ricardo Wurmus 2bdc07c2a5
gnu: Add perl-type-tiny.
* gnu/packages/perl.scm (perl-type-tiny): New variable.
2017-08-14 11:46:23 +02:00
Ricardo Wurmus a0eb3104a9
gnu: Add perl-ref-util-xs.
* gnu/packages/perl.scm (perl-ref-util-xs): New variable.
2017-08-14 11:46:14 +02:00
Ricardo Wurmus 44d37e43fe
gnu: Add perl-regexp-util.
* gnu/packages/perl.scm (perl-regexp-util): New variable.
2017-08-14 11:46:04 +02:00
Ricardo Wurmus 413dd21084
gnu: Add perl-type-tie.
* gnu/packages/perl.scm (perl-type-tie): New variable.
2017-08-14 11:45:56 +02:00
Ricardo Wurmus 649238cbc7
gnu: Add perl-math-random-isaac.
* gnu/packages/crypto.scm (perl-math-random-isaac): New variable.
2017-08-14 11:45:20 +02:00
Ricardo Wurmus d96e162aa9
gnu: Add perl-math-random-isaac-xs.
* gnu/packages/crypto.scm (perl-math-random-isaac-xs): New variable.
2017-08-14 11:44:15 +02:00
Ricardo Wurmus 2fa2179135
gnu: Add perl-hash-fieldhash.
* gnu/packages/perl.scm (perl-hash-fieldhash): New variable.
2017-08-14 11:37:08 +02:00
Arun Isaac 28fd275caf
gnu: arandr: Use absolute path for xrandr.
* gnu/packages/xdisorg.scm (arandr)[arguments]: Add configure phase.
2017-08-14 10:01:40 +02:00
Mark H Weaver 9031d26aeb
gnu: linux-libre: Update to 4.12.7.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.7.
(%linux-libre-hash): Update hash.
2017-08-14 03:33:09 -04:00
Mark H Weaver e96b4378a2
gnu: linux-libre@4.9: Update to 4.9.43.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.43.
2017-08-14 03:32:26 -04:00
Mark H Weaver 7aee6a311b
gnu: linux-libre@4.4: Update to 4.4.82.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.82.
2017-08-14 03:31:29 -04:00
Andy Wingo 3bfa7af417
gnu: libreoffice: Install .desktop files.
* gnu/packages/libreoffice.scm (libreoffice): Add phase to install .desktop
files to $out/share so that LibreOffice will show up in Gnome/KDE/etc and so
that it is associated with the various MIME types of interest.
2017-08-14 09:11:22 +02:00
Kei Kebreau ac2ddcc66f
gnu: wxmaxima: Update to 17.05.1.
* gnu/packages/maths.scm (wxmaxima): Update to 17.05.1.
[arguments]: Put "autoconf" phase after the "unpack" phase. Fix
indentation.
2017-08-13 18:18:27 -04:00
ng0 be6e2c3018
gnu: Update open-adventure to d43854f0f6bb8e9eea7fbce80348150e7e7fc34d.
* gnu/packages/games.scm (open-adventure): Update to
d43854f0f6bb8e9eea7fbce80348150e7e7fc34d.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-08-13 15:39:47 -04:00
ng0 05af41a181
gnu: linenoise: Update to commit 2105ce445821381cf1bca87b6d386d4ea88ee20d.
* gnu/packages/shells.scm (linenoise): Update to commit
2105ce445821381cf1bca87b6d386d4ea88ee20d. Fix indentation.
[source]: change to git.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-08-13 15:29:45 -04:00
Alex Vong f152208b0d
gnu: qemu: Fix CVE-2017-{10664,10806,10911,11434}.
* gnu/packages/patches/qemu-CVE-2017-10664.patch,
gnu/packages/patches/qemu-CVE-2017-10806.patch,
gnu/packages/patches/qemu-CVE-2017-10911.patch,
gnu/packages/patches/qemu-CVE-2017-11434.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-13 18:28:27 +02:00
Marius Bakke d5daf6fbe0
gnu: curl: Fix i686 test failure.
* gnu/packages/patches/curl-bounds-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/curl.scm (curl-7.55.0)[source]: Use it.
2017-08-13 16:46:41 +02:00
Marius Bakke 9766082045
gnu: imagemagick: Update to 6.9.9-7.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-7.
2017-08-13 15:14:03 +02:00
Oleg Pykhalov f7e8302b4e
gnu: Add emacs-nix-mode.
* gnu/packages/emacs.scm (emacs-nix-mode): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-13 13:20:30 +05:30
Efraim Flashner f4c808df5b
gnu: pspp: Update to 0.11.0.
This fixes CVE-2017-10791, CVE-2017-10792.

* gnu/packages/statistics.scm (pspp): Update to 0.11.0.
2017-08-13 10:16:17 +03:00
Peter Mikkelsen 06465d2ba4
gnu: Add mpd service.
* doc/guix.texi: Add documentation.
* gnu/services/audio.scm (<mpd-configuration>): New record type.
  (mpd-service-type): New service type.
* gnu/tests/audio.scm: New file.
* gnu/local.mk: Add new files.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-08-13 07:36:32 +01:00
Christopher Baines c0761f2e7e
gnu: moreutils: Add more inputs to moreutils.
The included ts command requires the Time::Duration and Date::Parse perl
modules for the -r option.

* gnu/packages/moreutils.scm (moreutils)[inputs]: Add perl-timedate and
  perl-time-duration.
  [arguments]: Wrap ts with PERL5LIB.
2017-08-12 22:09:50 +01:00
Efraim Flashner 861fd04baf
gnu: efl: Don't include gtk+@3 in enclosure.
* gnu/packages/enlightenment.scm (efl)[propagated-inputs]: Replace
libinput with libinput-minimal.
2017-08-12 23:10:38 +03:00
Efraim Flashner 9be481f8b9
gnu: efl: Update to 1.20.2.
* gnu/packages/enlightenment.scm (efl): Update to 1.20.2.
2017-08-12 23:10:36 +03:00
Mark H Weaver f814379463
gnu: linux-libre: Update to 4.12.6.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.6.
(%linux-libre-hash): Update hash.
2017-08-12 15:52:29 -04:00
Mark H Weaver 5a8fc7de66
gnu: linux-libre@4.9: Update to 4.9.42.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.42.
2017-08-12 15:51:47 -04:00
Mark H Weaver 7d7c84a7bf
gnu: linux-libre@4.4: Update to 4.4.81.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.81.
2017-08-12 15:51:00 -04:00
Danny Milosavljevic 462ae6f612
gnu: python-pylint: Use Python2 variant system.
* gnu/packages/python.scm (python-pylint): Use Python2 variant system.
(python2-pylint): Strip Python2 variant system.
2017-08-12 16:30:16 +02:00
Alex Vong bfcdf88760
gnu: catdoc: Fix CVE-2017-11110.
* gnu/packages/patches/catdoc-CVE-2017-11110.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/textutils.scm (catdoc)[source]: Use it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-12 15:30:23 +02:00
Marius Bakke 3ddaa7922b
gnu: e2fsprogs: Update to 1.43.5.
* gnu/packages/linux.scm (e2fsprogs): Update to 1.43.5.
2017-08-12 14:07:41 +02:00
Marius Bakke f1f2da6bce
gnu: feh: Update to 2.19.2.
* gnu/packages/image-viewers.scm (feh): Update to 2.19.2.
2017-08-12 13:59:14 +02:00
Tobias Geerinckx-Rice 3f09b46d93
gnu: dub: Update to 1.4.1.
* gnu/packages/ldc.scm (dub): Update to 1.4.1.
2017-08-11 16:46:00 +02:00
Andy Wingo f7fc9667b2
gnu: Add cloc.
* gnu/packages/code.scm (cloc): New public variable.
2017-08-11 10:38:30 +02:00
Mark H Weaver 3785e42e52
Merge branch 'master' into core-updates 2017-08-11 03:49:24 -04:00
Leo Famulari d373c16f33
gnu: imagemagick: Update to 6.9.9-5.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-5.
2017-08-10 20:12:47 -04:00
Tobias Geerinckx-Rice 1c865bfce5
gnu: mksh: Update to 56.
* gnu/packages/shells.scm (mksh): Update to 56.
2017-08-11 01:02:12 +02:00
Tobias Geerinckx-Rice eec0c587af
gnu: ruby-debug-inspector: Update to 0.0.3.
* gnu/packages/ruby.scm (ruby-debug-inspector): Update to 0.0.3.
2017-08-11 00:21:00 +02:00
Tobias Geerinckx-Rice c3b36fa161
gnu: ruby-listen: Update to 3.1.5.
* gnu/packages/ruby.scm (ruby-listen): Update to 3.1.5.
2017-08-11 00:20:59 +02:00
Tobias Geerinckx-Rice 98ff58a53d
gnu: ruby-introspection: Update to 0.0.4.
* gnu/packages/ruby.scm (ruby-introspection): Update to 0.0.4.
2017-08-11 00:20:59 +02:00
Tobias Geerinckx-Rice a88f24d860
gnu: ruby-simplecov-html: Update to 0.10.1.
* gnu/packages/ruby.scm (ruby-simplecov-html): Update to 0.10.1.
2017-08-11 00:20:58 +02:00
Tobias Geerinckx-Rice ba074a85d0
gnu: ruby-net-http-digest-auth: Update to 1.4.1.
* gnu/packages/ruby.scm (ruby-net-http-digest-auth): Update to 1.4.1.
2017-08-11 00:20:57 +02:00
Tobias Geerinckx-Rice 12313cd071
gnu: ruby-nenv: Update to 0.3.0.
* gnu/packages/ruby.scm (ruby-nenv): Update to 0.3.0.
2017-08-11 00:20:57 +02:00
Tobias Geerinckx-Rice aeb4e61e75
gnu: ruby-rjb: Update to 1.5.5.
* gnu/packages/ruby.scm (ruby-rjb): Update to 1.5.5.
2017-08-11 00:20:56 +02:00
Tobias Geerinckx-Rice acbc506218
gnu: ruby-libxml: Update to 3.0.0.
* gnu/packages/ruby.scm (ruby-libxml): Update to 3.0.0.
2017-08-11 00:20:55 +02:00
Tobias Geerinckx-Rice 6f9652b0a1
gnu: ruby-minitest-bacon: Update to 1.0.3.
* gnu/packages/ruby.scm (ruby-minitest-bacon): Update to 1.0.3.
2017-08-11 00:20:55 +02:00
Tobias Geerinckx-Rice fbefd6ffbf
gnu: ruby-tins: Update to 1.15.0.
* gnu/packages/ruby.scm (ruby-tins): Update to 1.15.0.
2017-08-11 00:20:54 +02:00
Tobias Geerinckx-Rice ceaff59ec7
gnu: ruby-git: Update to 1.3.0.
* gnu/packages/ruby.scm (ruby-git): Update to 1.3.0.
2017-08-11 00:20:53 +02:00
Tobias Geerinckx-Rice c9e261b7eb
gnu: ruby-minitest-bonus-assertions: Update to 3.0.
* gnu/packages/ruby.scm (ruby-minitest-bonus-assertions): Update to 3.0.
2017-08-11 00:20:52 +02:00
Tobias Geerinckx-Rice d21c6686d0
gnu: ruby-minitest-hooks: Update to 1.4.1.
* gnu/packages/ruby.scm (ruby-minitest-hooks): Update to 1.4.1.
2017-08-11 00:20:52 +02:00
Tobias Geerinckx-Rice d74d96e466
gnu: ruby-test-unit: Update to 3.2.5.
* gnu/packages/ruby.scm (ruby-test-unit): Update to 3.2.5.
2017-08-11 00:20:51 +02:00
Tobias Geerinckx-Rice 2e8cd8624d
gnu: ruby-thor: Update to 0.19.4.
* gnu/packages/ruby.scm (ruby-thor): Update to 0.19.4.
2017-08-11 00:20:50 +02:00
Tobias Geerinckx-Rice 1d60c436aa
gnu: ruby-packnga: Update to 1.0.4.
* gnu/packages/ruby.scm (ruby-packnga): Update to 1.0.4.
2017-08-11 00:20:50 +02:00
Tobias Geerinckx-Rice e32dfb7405
gnu: ruby-lumberjack: Update to 1.0.12.
* gnu/packages/ruby.scm (ruby-lumberjack): Update to 1.0.12.
2017-08-11 00:20:49 +02:00
Tobias Geerinckx-Rice 185ea4465d
gnu: ruby-net-http-persistent: Update to 3.0.0.
* gnu/packages/ruby.scm (ruby-net-http-persistent): Update to 3.0.0.
2017-08-11 00:20:48 +02:00
Tobias Geerinckx-Rice 04de0cb5a0
gnu: ruby-mail: Update to 2.6.6.
* gnu/packages/ruby.scm (ruby-mail): Update to 2.6.6.
2017-08-11 00:20:48 +02:00
Tobias Geerinckx-Rice 263c0dbf00
gnu: ruby-ox: Update to 2.6.0.
* gnu/packages/ruby.scm (ruby-ox): Update to 2.6.0.
2017-08-11 00:20:47 +02:00
Tobias Geerinckx-Rice 2a91494ed1
gnu: ruby-redcloth: Update to 4.3.2.
* gnu/packages/ruby.scm (ruby-redcloth): Update to 4.3.2.
2017-08-11 00:20:46 +02:00
Tobias Geerinckx-Rice a3179a7338
gnu: ruby-connection-pool: Update to 2.2.1.
* gnu/packages/ruby.scm (ruby-connection-pool): Update to 2.2.1.
2017-08-11 00:20:46 +02:00
Tobias Geerinckx-Rice 56822223c1
gnu: ruby-fivemat: Update to 1.3.5.
* gnu/packages/ruby.scm (ruby-fivemat): Update to 1.3.5.
2017-08-11 00:20:45 +02:00
Tobias Geerinckx-Rice 8d10918a43
gnu: ruby-daemons: Update to 1.2.4.
* gnu/packages/ruby.scm (ruby-daemons): Update to 1.2.4.
2017-08-11 00:20:44 +02:00
Tobias Geerinckx-Rice e2fcef3913
gnu: ruby-diff-lcs: Update to 1.3.
* gnu/packages/ruby.scm (ruby-diff-lcs): Update to 1.3.
2017-08-11 00:20:44 +02:00
Tobias Geerinckx-Rice 313dd5ddc0
gnu: ruby-thread-safe: Update to 0.3.6.
* gnu/packages/ruby.scm (ruby-thread-safe): Update to 0.3.6.
2017-08-11 00:20:43 +02:00
Tobias Geerinckx-Rice 884a80dd0a
gnu: ruby-pkg-config: Update to 1.2.5.
* gnu/packages/ruby.scm (ruby-pkg-config): Update to 1.2.5.
2017-08-11 00:20:43 +02:00
Tobias Geerinckx-Rice 30caad5080
gnu: ruby-eventmachine: Update to 1.2.5.
* gnu/packages/ruby.scm (ruby-eventmachine): Update to 1.2.5.
2017-08-11 00:20:42 +02:00
Tobias Geerinckx-Rice f3a6311af4
gnu: ruby-term-ansicolor: Update to 1.6.0.
* gnu/packages/ruby.scm (ruby-term-ansicolor): Update to 1.6.0.
2017-08-11 00:20:41 +02:00
Tobias Geerinckx-Rice 0cd7b8164d
gnu: ruby-rake-compiler: Update to 1.0.4.
* gnu/packages/ruby.scm (ruby-rake-compiler): Update to 1.0.4.
2017-08-11 00:20:40 +02:00
Tobias Geerinckx-Rice 3b0e45c86d
gnu: ruby-useragent: Update to 0.16.8.
* gnu/packages/ruby.scm (ruby-useragent): Update to 0.16.8.
2017-08-11 00:20:40 +02:00
Tobias Geerinckx-Rice 5620bd456f
gnu: ruby-domain-name: Update to 0.5.20170404.
* gnu/packages/ruby.scm (ruby-domain-name): Update to 0.5.20170404.
2017-08-11 00:20:39 +02:00
Tobias Geerinckx-Rice a7ca218cd5
gnu: ruby-notiffany: Update to 0.1.1.
* gnu/packages/ruby.scm (ruby-notiffany): Update to 0.1.1.
2017-08-11 00:20:39 +02:00
Tobias Geerinckx-Rice d5489a618d
gnu: ruby-byebug: Update to 9.0.6.
* gnu/packages/ruby.scm (ruby-byebug): Update to 9.0.6.
2017-08-11 00:20:38 +02:00
Tobias Geerinckx-Rice 65a7f09ce0
gnu: ruby-sequel: Update to 4.49.0.
* gnu/packages/ruby.scm (ruby-sequel): Update to 4.49.0.
2017-08-11 00:20:38 +02:00
Tobias Geerinckx-Rice d1c1f36803
gnu: ruby-shoulda-matchers: Update to 3.1.2.
* gnu/packages/ruby.scm (ruby-shoulda-matchers): Update to 3.1.2.
2017-08-11 00:20:37 +02:00
Tobias Geerinckx-Rice 8e5ff25042
gnu: ruby-arel: Update to 8.0.0.
* gnu/packages/ruby.scm (ruby-arel): Update to 8.0.0.
2017-08-11 00:20:37 +02:00
Tobias Geerinckx-Rice 56ccada3c1
gnu: ruby-rb-fsevent: Update to 0.10.2.
* gnu/packages/ruby.scm (ruby-rb-fsevent): Update to 0.10.2.
2017-08-11 00:20:36 +02:00
Tobias Geerinckx-Rice cd698b6e20
gnu: ruby-utils: Update to 0.9.0.
* gnu/packages/ruby.scm (ruby-utils): Update to 0.9.0.
2017-08-11 00:20:35 +02:00
Tobias Geerinckx-Rice e322222ab4
gnu: ruby-tzinfo: Update to 1.2.3.
* gnu/packages/ruby.scm (ruby-tzinfo): Update to 1.2.3.
2017-08-11 00:20:35 +02:00
Tobias Geerinckx-Rice 32bbfea811
gnu: ruby-rb-inotify: Update to 0.9.10.
* gnu/packages/ruby.scm (ruby-rb-inotify): Update to 0.9.10.
2017-08-11 00:20:34 +02:00
Tobias Geerinckx-Rice 8929f0a481
gnu: ruby-gherkin: Update to 4.1.3.
* gnu/packages/ruby.scm (ruby-gherkin): Update to 4.1.3.
2017-08-11 00:20:33 +02:00
Tobias Geerinckx-Rice 3d4a5eb555
gnu: ruby-timecop: Update to 0.9.1.
* gnu/packages/ruby.scm (ruby-timecop): Update to 0.9.1.
2017-08-11 00:20:33 +02:00
Tobias Geerinckx-Rice 483846ac6f
gnu: ruby-minitest: Update to 5.10.3.
* gnu/packages/ruby.scm (ruby-minitest): Update to 5.10.3.
2017-08-11 00:20:32 +02:00
Tobias Geerinckx-Rice 5ca48923f5
gnu: ruby-redcarpet: Update to 3.4.0.
* gnu/packages/ruby.scm (ruby-redcarpet): Update to 3.4.0.
2017-08-11 00:20:32 +02:00
Tobias Geerinckx-Rice dc97df2ef4
gnu: ruby-cucumber-core: Update to 2.0.0.
* gnu/packages/ruby.scm (ruby-cucumber-core): Update to 2.0.0.
2017-08-11 00:20:31 +02:00
Tobias Geerinckx-Rice ce5f523001
gnu: ruby-pg: Update to 0.21.0.
* gnu/packages/ruby.scm (ruby-pg): Update to 0.21.0.
2017-08-11 00:20:30 +02:00
Tobias Geerinckx-Rice d14e5eaa19
gnu: ruby-slop: Update to 4.5.0.
* gnu/packages/ruby.scm (ruby-slop): Update to 4.5.0.
2017-08-11 00:20:29 +02:00
Marius Bakke c2f93e9c07
gnu: openjpeg: Update to 2.2.0 [security fixes].
In addition to the patches we already had (which are not mentioned in the
ChangeLog, but verified by following their respective GitHub issues) this
release also fixes CVE-2016-9112, CVE-2016-5139, CVE-2016-5152, CVE-2016-5158,
CVE-2016-5159, CVE-2016-1626 and CVE-2016-1628.

See <https://github.com/uclouvain/openjpeg/blob/v2.2.0/CHANGELOG.md> for details.

* gnu/packages/patches/openjpeg-CVE-2016-9572-CVE-2016-9573.patch,
  gnu/packages/patches/openjpeg-CVE-2016-9850-CVE-2016-9851.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/image.scm (openjpeg): Update to 2.2.0.
[source](patches): Remove.
* gnu/packages/gstreamer.scm (gst-plugins-bad)[arguments]: Add phase to patch
hard-coded openjpeg-2.1 path.
2017-08-10 22:23:31 +02:00
Marius Bakke 1a1558e88f
gnu: postgresql: Update to 9.6.4 [fixes CVE-2017-{7546,7547,7548}].
See <https://www.postgresql.org/about/news/1772/> for more information.

* gnu/packages/databases.scm (postgresql): Update to 9.6.4.
2017-08-10 22:23:31 +02:00
Leo Famulari 1e07daa27a
gnu: mercurial: Update to 4.2.3 [fixes CVE-2017-1000116].
* gnu/packages/version-control.scm (mercurial): Update to 4.2.3.
2017-08-10 15:02:04 -04:00
Leo Famulari 38f8a882ab
gnu: git: Update to 2.14.1 [fixes CVE-2017-1000117].
* gnu/packages/version-control.scm (git): Update to 2.14.1.
2017-08-10 15:02:04 -04:00
Leo Famulari 5993f7c455
gnu: subversion: Update to 1.8.19 [fixes CVE-2017-9800].
* gnu/packages/version-control.scm (subversion): Update to 1.8.19.
[source]: Add alternate URL.
2017-08-10 15:02:04 -04:00
Oleg Pykhalov f262f44683
gnu: Add emacs-engine-mode.
* gnu/packages/emacs.scm (emacs-engine-mode): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-10 22:25:25 +05:30
Leo Famulari 783daa4982
gnu: libsoup: Update to 2.58.2 (fixes CVE-2017-2885).
* gnu/packages/gnome.scm (libsoup): Update to 2.58.2.
2017-08-10 12:25:31 -04:00
Tobias Geerinckx-Rice ddde3f6be1
gnu: catimg: Update to 2.4.0.
* gnu/packages/image-viewers.scm (catimg): Update to 2.4.0.
2017-08-10 17:26:08 +02:00
Tobias Geerinckx-Rice 226685faa5
gnu: cppcheck: Update to 1.80.
* gnu/packages/check.scm (cppcheck): Update to 1.80.
2017-08-10 17:26:07 +02:00
Tobias Geerinckx-Rice c63b83a40f
gnu: vdirsyncer: Update to 0.16.1.
* gnu/packages/dav.scm (vdirsyncer): Update to 0.16.1.
2017-08-10 17:26:07 +02:00
Ben Woodcroft 37b08547e4
gnu: ruby-bio-commandeer: Update to 0.4.0.
* gnu/packages/ruby.scm (ruby-bio-commandeer): Update to 0.4.0.
2017-08-10 22:20:38 +10:00
Oleg Pykhalov 27feda65e7
gnu: Add emacs-erc-hl-nicks.
* gnu/packages/emacs.scm (emacs-erc-hl-nicks): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-10 14:55:09 +05:30
Oleg Pykhalov 1ee879e967
gnu: Add emacs-gitpatch.
By the way, “gitpatch.el” says different version than release tarball.
Do I need to ask a developer?
--8<---------------cut here---------------start------------->8---
;; Author: Feng Shu <tumashu@163.com>
;; Homepage: https://github.com/tumashu/gitpatch
;; Keywords: convenience
;; Package-Requires: ((emacs "24.3"))
;; Version: 0.10
--8<---------------cut here---------------end--------------->8---

>From 9eddf07fa401468738c2f48a25e51ddef2a3ceed Mon Sep 17 00:00:00 2001
From: Oleg Pykhalov <go.wigust@gmail.com>
Date: Sat, 29 Jul 2017 14:22:48 +0300
Subject: [PATCH] gnu: Add emacs-gitpatch.

* gnu/packages/emacs.scm (emacs-gitpatch): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-10 14:37:17 +05:30
Oleg Pykhalov a88adeb343
gnu: Add emacs-git-messenger.
gnu/packages/emacs.scm (emacs-git-messenger): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-10 13:27:05 +05:30
Christopher Baines 1012056625
services: admin: Simplify the handling of the Tailon debug? option.
* gnu/services/admin.scm (tailon-configuration-file-compiler): Simplify the
  handling of debug?.
2017-08-09 23:50:35 +01:00
Christopher Baines 91fdc8a574
services: Update the Tailon service for Tailon 1.3.0.
Tailon 1.3.0 (upgraded from 1.1.1) adds support for HTTP authentication.

* gnu/services/admin.scm (<tailon-configuration-file>): Add http-auth and
  users configuration values.
  (tailon-configuration-file-http-auth, tailon-configuration-file-users): New
  procedures.
  (tailon-configuration-file-compiler): Add support for the http-auth and
  users configuration options.
* doc/guix.texi (Monitoring Services): Document authentication for Tailon.
2017-08-09 23:50:31 +01:00
Christopher Baines f2d8e7f720
services: Add missing wrap-lines option to tailon.
* gnu/services/admin.scm (<tailon-configuration-file>): Add wrap-lines.
  (tailon-configuration-wrap-lines): New procedure.
  (tailon-configuration-file-compiler): Add support for wrap-lines.
* doc/guix.texi (Monitoring Services): Document the wrap-lines Tailon
  configuration option.
2017-08-09 23:50:27 +01:00
Christopher Baines 761f5865c8
gnu: Update tailon to version 1.3.0.
From version 1.1.1.

* gnu/packages/logging.scm (tailon)[version]: Change to 1.3.0.
  [inputs]: Add python-tornado-http-auth.
2017-08-09 23:50:23 +01:00
Christopher Baines c795bc79d9
gnu: Add python-tornado-http-auth.
* gnu/packages/python.scm (python-tornado-http-auth): New variable.
2017-08-09 23:50:10 +01:00
Marius Bakke d156c999d0
Merge branch 'master' into core-updates 2017-08-10 00:18:36 +02:00
Marius Bakke 4c6c683862
gnu: nmap: Update to 7.60.
* gnu/packages/admin.scm (nmap): Update to 7.60.
2017-08-10 00:15:35 +02:00
Marius Bakke 79d9525071
gnu: curl: Update replacement to 7.55.0. [security fixes]
Fixes CVE-2017-1000099, CVE-2017-1000100, and CVE-2017-100101.
See <https://curl.haxx.se/docs/security.html> for details.

* gnu/packages/curl.scm (curl)[replacement]: Update to 7.55.0.
(curl-7.54.1): Rename to ...
(curl-7.55.0): ... this.
[source]: Update source URI to match upstream compression method change.
[arguments]: Add 'fix-Makefile' phase.
2017-08-10 00:15:35 +02:00
Marius Bakke 2e8c61fcf0
gnu: samba: Update to 4.6.7.
* gnu/packages/samba.scm (samba): Update to 4.6.7.
2017-08-10 00:15:34 +02:00
Mark H Weaver cc294bcee6
Merge branch 'master' into core-updates 2017-08-09 17:25:31 -04:00
Leo Famulari ae7f246cf1
gnu: python-nbformat: Update to 4.3.0.
* gnu/packages/python.scm (python-nbformat, python2-nbformat): Update to 4.3.0.
2017-08-09 16:52:51 -04:00
Leo Famulari 10756b9ed1
gnu: gnupg: Update to 2.1.23.
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.23.
[arguments]: Remove 'enable-gpg2-is-gpg' from #:configure-flags, since it is now
the default.
2017-08-09 16:01:33 -04:00
Ricardo Wurmus 1b22ecdac4
gnu: r-wgcna: Update to 1.61.
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.61.
[propagated-inputs]: Add r-rcpp, r-robust, r-survival.
2017-08-09 20:08:13 +02:00
Ricardo Wurmus c5f744a68d
gnu: Add r-robust.
* gnu/packages/statistics.scm (r-robust): New variable.
2017-08-09 20:08:13 +02:00
Ricardo Wurmus 5d0afe8849
gnu: Add r-fit-models.
* gnu/packages/statistics.scm (r-fit-models): New variable.
2017-08-09 20:08:13 +02:00
Ricardo Wurmus 0bae5fd6a7
gnu: Add r-rrcov.
* gnu/packages/statistics.scm (r-rrcov): New variable.
2017-08-09 20:08:13 +02:00
Ricardo Wurmus 23841b2573
gnu: Add r-pcapp.
* gnu/packages/statistics.scm (r-pcapp): New variable.
2017-08-09 20:08:13 +02:00
Ricardo Wurmus 0ecd065839
gnu: r-gdtools: Update to 0.1.5.
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.5.
2017-08-09 20:08:12 +02:00
Ricardo Wurmus c3317cd9fb
gnu: r-ggbeeswarm: Update to 0.6.0.
* gnu/packages/statistics.scm (r-ggbeeswarm): Update to 0.6.0.
2017-08-09 20:08:12 +02:00
Mark H Weaver ea0277abcd
gnu: icecat: Add more fixes from upstream mozilla-esr52.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add fixes for CVE-2017-7802,
CVE-2017-7803, CVE-2017-7807, and the remaining 6 out of 23 changesets for
CVE-2017-7779.
2017-08-09 13:16:52 -04:00
Mark H Weaver 12025fb9b0
gnu: icecat: Rename patches to reflect CVE assignments.
Document that our existing patches include fixes for CVE-2017-7753,
CVE-2017-7784, CVE-2017-7786, CVE-2017-7787, CVE-2017-7791, CVE-2017-7792,
CVE-2017-7798, CVE-2017-7798, CVE-2017-7800, CVE-2017-7801, and 17 out of 23
changesets for CVE-2017-7779.

* gnu/packages/gnuzilla.scm (icecat)[source]: Rename patches to reflect CVE
assignments.
2017-08-09 13:16:43 -04:00
ng0 28e12d6c81
gnu: gnurl: Update to 7.55.0.
* gnu/packages/gnunet.scm (gnurl): Update to 7.55.0.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2017-08-09 18:16:51 +02:00
Tobias Geerinckx-Rice a4afc536f9
gnu: virt-manager: Update to 1.4.2.
* gnu/packages/virtualization.scm (virt-manager): Update to 1.4.2.
2017-08-09 16:45:32 +02:00
Tobias Geerinckx-Rice 448052b713
gnu: libgdata: Disable failing tests.
* gnu/packages/gnome.scm (libgdata)[arguments]: Add ‘disable-failing-tests’
phase.
2017-08-09 16:31:06 +02:00
Ricardo Wurmus 18f5d2a70a
gnu: Add reference to (gnu packages graph).
This is a follow-up to 1738138cb3.
2017-08-09 15:43:35 +02:00
Ricardo Wurmus 1738138cb3
gnu: r-igraph: Move to (gnu packages graph).
* gnu/packages/statistics.scm (r-igraph): Move from here...
* gnu/packages/graph.scm (r-igraph): ...to here.
2017-08-09 14:47:47 +02:00
Ricardo Wurmus 31476df32e
gnu: Add python-igraph.
* gnu/packages/graph.scm (python-igraph): New variable.
2017-08-09 14:47:47 +02:00
Ricardo Wurmus e57fffad90
gnu: Add igraph.
* gnu/packages/graph.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2017-08-09 14:47:47 +02:00
Efraim Flashner ea77385c4c
gnu: viewnior: Don't build icon-theme.cache.
* gnu/packages/image-viewers.scm (viewnior)[arguments]: Add phase to
disable building the icon-theme.cache.
2017-08-09 14:09:43 +03:00
Manolis Ragkousis 2d5bf32b8a
gnu: googletest: Build shared libraries.
* gnu/packages/check.scm (googletest)[arguments]: Pass "-DBUILD_SHARED_LIBS=ON"
  in #:configure-flags.
2017-08-09 13:53:29 +03:00
Manolis Ragkousis c608fe8cf3
gnu: Add ois.
* gnu/packages/game-development.scm (ois): New variable.
2017-08-09 13:53:16 +03:00
Eric Bavier d84b09e937
gnu: dealii: Update to 8.5.0.
* gnu/packages/maths.scm (dealii): Update to 8.5.0.
[arguments]: Delete 'hint-example-prefix phase, which would need adjusting for
this version.  Users can use e.g. 'export DEAL_II_DIR=$GUIX_ENVIRONMENT'.
Adjust configuration flags.
2017-08-09 01:56:53 -05:00
Eric Bavier 05cca6ce90
gnu: stress-make: Patch default shell.
* gnu/packages/debug.scm (stress-make)[arguments]: Add 'set-default-shell
phase.
2017-08-09 01:56:53 -05:00
Eric Bavier bd5b5ac0c5
gnu: suitesparse: Update to 4.5.5.
* gnu/packages/maths.scm (suitesparse): Update to 4.5.5.
[source]: Add 'modules' and 'snippet' field to remove bundled source.
[arguments]: Remove 'prepare-out' phase.  Adjust #:make-flags for metis.
Make build parallel, since it now appears to be safe.
[inputs]: Add metis.
2017-08-09 01:56:53 -05:00
Eric Bavier 2509522c4f
gnu: suitesparse: Use modify-phases.
* gnu/packages/maths.scm (suitesparse)[arguments]: Use modify-phases.
2017-08-09 01:56:53 -05:00
Eric Bavier 9731c412e9
gnu: petsc, slepc: Use 'parallel-job-count'.
* gnu/packages/maths.scm (petsc, slepc)[arguments]: Set #:make-flags to
override default unlimited '-j'.
(petsc)[arguments]: Scrub build machine cores from installed files in
'clean-local-references' phase.
2017-08-09 01:56:53 -05:00
Eric Bavier baeaf8821d
gnu: slepc: Update to 3.7.4.
* gnu/packages/maths.scm (slepc): Update to 3.7.4.
[source]: Use direct source link.  Remove 'file-name' field.
2017-08-09 01:56:52 -05:00
Eric Bavier 41a46a5035
gnu: petsc: Update to 3.7.6.
* gnu/packages/maths.scm (petsc): Update to 3.7.6.
2017-08-09 01:56:46 -05:00
Tobias Geerinckx-Rice 026051953d
gnu: epiphany: Update to 3.24.3.
* gnu/packages/gnome.scm (epiphany): Update to 3.24.3.
2017-08-09 07:20:57 +02:00
Tobias Geerinckx-Rice c762011e40
gnu: tracker: Update to 1.12.2.
* gnu/packages/gnome.scm (tracker): Update to 1.12.2.
2017-08-09 07:20:56 +02:00
Tobias Geerinckx-Rice 666901b298
gnu: gnome-online-accounts: Update to 3.24.2.
* gnu/packages/gnome.scm (gnome-online-accounts): Update to 3.24.2.
2017-08-09 07:20:56 +02:00
Tobias Geerinckx-Rice a51fc34c28
gnu: mutter: Update to 3.24.4.
* gnu/packages/gnome.scm (mutter): Update to 3.24.4.
2017-08-09 07:20:55 +02:00
Tobias Geerinckx-Rice 0d2df50caf
gnu: gedit: Support gspell.
* gnu/packages/gnome.scm (gedit)[arguments]: Remove #:configure-flags.
[inputs]: Add gspell.
2017-08-09 07:20:55 +02:00
Tobias Geerinckx-Rice e3705bb6ea
gnu: gedit: Update to 3.22.1.
* gnu/packages/gnome.scm (gedit): Update to 3.22.1.
2017-08-09 07:20:54 +02:00
Tobias Geerinckx-Rice eccd35be3d
gnu: gspell: Propagate enchant dependency.
* gnu/packages/gnome.scm (gspell)[inputs]: Move enchant from here...
[propagated-inputs]: ...to here.
2017-08-09 07:20:09 +02:00
Tobias Geerinckx-Rice a801ae4cae
gnu: gspell: Order inputs alphabetically.
* gnu/packages/gnome.scm (gspell)[inputs, native-inputs]: Re-order.
2017-08-09 07:20:09 +02:00
Tobias Geerinckx-Rice 9099bedfea
gnu: gnumeric: Update to 1.12.35.
* gnu/packages/gnome.scm (gnumeric): Update to 1.12.35.
2017-08-09 07:20:08 +02:00
Tobias Geerinckx-Rice e2bf423ab4
gnu: brasero: Update to 3.12.2.
* gnu/packages/gnome.scm (brasero): Update to 3.12.2.
2017-08-09 07:20:08 +02:00
Tobias Geerinckx-Rice f032d0be9c
gnu: Use HTTPS for gnome.org and subdomains.
* gnu/packages/fonts.scm (font-bitstream-vera)[home-page]: Use HTTPS.
* gnu/packages/glib.scm (glib)[home-page]: Likewise.
* gnu/packages/gnome.scm (gcr, libgnome-keyring, gnome-keyring, evince)
(gnome-icon-theme, libgsf, gnome-mime-data, vala, vte, python2-rsvg)
(glib-networking, gnome-settings-daemon, libchamplain, grilo, grilo-plugins)
(gjs, zenity, mutter, network-manager, network-manager-applet, gdm)
[home-page]: Likewise.
* gnu/packages/gtk.scm (gtk-engines, murrine)[home-page]: Likewise.
2017-08-09 00:49:41 +02:00
Christopher Baines 9bb47d7df8
gnu: 0ad: Update to 0.0.22-alpha.
* gnu/packages/games.scm (0ad-data, 0ad): Update to 0.0.22-alpha.
2017-08-08 21:24:01 +01:00
Christopher Baines 0642838b2e
services: herd: Add a stop-service procedure.
* gnu/services/herd.scm (stop-service): New procedure.
2017-08-08 20:49:08 +01:00
Christopher Baines dc7b3e5633
services: herd: Fix matching ok responses from shepherd service.
Previously the match expression case for a successful response
(where error is #f) required that the result component contained a list with a
single element.

As far as I see when looking at the responses from the shepherd, this is not
normally the case. Therefore, to avoid treating successful responses as
errors, make the match requirement more permissive, accepting any value.

* gnu/services/herd.scm (invoke-action): Change match condition for ok responses.
2017-08-08 20:48:53 +01:00
Efraim Flashner 65831c6425
gnu: babl: Update to 0.1.28.
* gnu/packages/gimp.scm (babl): Update to 0.1.28.
2017-08-08 18:43:07 +03:00
Efraim Flashner 3616ff51b3
gnu: gegl: Use 'modify-phases' syntax.
* gnu/packages/gimp.scm (gegl)[arguments]: Use the 'modify-phases' syntax.
2017-08-08 18:43:05 +03:00
Efraim Flashner b0a21b56db
gnu: gegl: Fix building on aarch64.
* gnu/packages/gimp.scm (gegl)[arguments]: Add '-lm' configure-flag.
2017-08-08 18:43:03 +03:00
Ben Woodcroft cc36165efa
gnu: ruby-activesupport: Update to 5.1.3.
* gnu/packages/ruby.scm (ruby-activesupport): Update to 5.1.3.
2017-08-08 21:54:20 +10:00
Tobias Geerinckx-Rice b998781d24
gnu: pciutils: Update to 3.5.5.
* gnu/packages/pciutils.scm (pciutils): Update to 3.5.5.
2017-08-08 05:23:38 +02:00
Tobias Geerinckx-Rice a40af5d0ad
gnu: hunspell: Update to 1.6.1.
* gnu/packages/libreoffice.scm (hunspell): Update to 1.6.1.
[native-inputs]: Add autoconf, automake, and libtool.
[arguments]: Add ‘bootstrap’ phase.
2017-08-08 05:23:37 +02:00
Tobias Geerinckx-Rice fc3560fff1
gnu: hunspell: Update home page.
* gnu/packages/libreoffice.scm (hunspell)[home-page]: Update it.
2017-08-08 05:23:37 +02:00
Tobias Geerinckx-Rice 625761a502
gnu: aspell-dict-en: Update to 2017.01.22-0.
Add missing copyright line for 2016.

* gnu/packages/aspell.scm (aspell-dict-en): Update to 2017.01.22-0.
2017-08-08 05:23:37 +02:00
Tobias Geerinckx-Rice d459524713
gnu: moreutils: Update to 0.61.
* gnu/packages/moreutils.scm (moreutils): Update to 0.61.
2017-08-08 05:23:36 +02:00
Tobias Geerinckx-Rice 7fae2063f8
gnu: sudo: Use ‘modify-phases’ syntax.
* gnu/packages/admin.scm (sudo)[arguments]: Use ‘modify-phases’.
2017-08-08 05:23:36 +02:00
Mark H Weaver 4f4134c26d
gnu: linux-libre: Update to 4.12.5.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.5.
(%linux-libre-hash): Update hash.
2017-08-07 21:33:03 -04:00
Mark H Weaver 99ccc74725
gnu: linux-libre@4.9: Update to 4.9.41.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.41.
2017-08-07 21:32:13 -04:00
Mark H Weaver c56b08b1e5
gnu: linux-libre@4.4: Update to 4.4.80.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.80.
2017-08-07 21:31:36 -04:00
Mark H Weaver c36e27d504
gnu: linux-libre@4.1: Update to 4.1.43.
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.43.
2017-08-07 21:30:47 -04:00
Ben Woodcroft 63755fcd65
gnu: ruby-puma: Update to 3.9.1.
* gnu/packages/ruby.scm (ruby-puma): Update to 3.9.1.
[source]: Remove patch.
[arguments]: Disable tests.
[native-inputs]: Remove field.
* gnu/packages/patches/ruby-puma-ignore-broken-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-08 09:31:18 +10:00
Ben Woodcroft 5b0c223ae3
gnu: ruby-nokogiri-diff: Update to 0.2.0-1.a38491e4.
* gnu/packages/ruby.scm (ruby-nokogiri-diff): Update to 0.2.0-1.a38491e4.
2017-08-08 09:30:44 +10:00
Ben Woodcroft 5071f17b29
gnu: ruby-tdiff: Update to 0.3.3-1.b662a604.
* gnu/packages/ruby.scm: Update to 0.3.3-1.b662a604
2017-08-08 09:30:40 +10:00
Ben Woodcroft e7ea30d59a
ruby: Replace with ruby-2.4.1.
* gnu/packages/ruby.scm (ruby-2.4.1): New variable.
(ruby)[replacement]: New field.
2017-08-08 09:30:02 +10:00
Mark H Weaver 2d9495da23
Merge branch 'master' into core-updates 2017-08-07 16:45:16 -04:00
Efraim Flashner 57e96e48b1
gnu: propeller-gcc-4: Don't build on aarch64-linux.
* gnu/packages/embedded.scm (propeller-gcc-4)[supported-system]: New field.
2017-08-07 17:02:24 +03:00
Efraim Flashner 6eed26443f
gnu: nim: Update to 0.17.0.
* gnu/packages/nim.scm (nim): Update to 0.17.0.
[source, home-page]: Use https.
[arguments]: Patch more shebangs, use custom build phase.
2017-08-07 13:37:28 +03:00
Leo Famulari c97fbf55e7
gnu: texlive: Remove texlive-minimal.
This package is superseded by the modular TeX Live distribution.

* gnu/packages/tex.scm (texlive-minimal, texlive-texmf-minimal): Remove
variables.
2017-08-07 12:29:20 +02:00
Leo Famulari 1335167a3b
gnu: biber: Update to 2.7.
* gnu/packages/tex.scm (biber)[name]: Rename to 'biber'.
(biber-2.5): Remove variable.
2017-08-07 12:08:58 +02:00
Leo Famulari 149f668821
gnu: texlive: Update to 2017.
* gnu/packages/tex.scm (texlive, texlive-texmf): Update to 2017.
(texlive-texmf-src): Update to 20170524. Remove
'texlive-texmf-CVE-2016-10243.patch'.
(texlive-bin, texlive-extra-src): Update to 20170524.
* gnu/packages/patches/texlive-texmf-CVE-2016-10243.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-07 12:08:03 +02:00
Marius Bakke 83fef82b7c
gnu: cubicle: Fix evaluation.
* gnu/packages/maths.scm (cubicle)[native-inputs]: Retrieve WHICH from
(gnu packages base).
2017-08-07 12:02:33 +02:00
Efraim Flashner cda20ee816
gnu: vapoursynth: Don't build on aarch64-linux.
* gnu/packages/video.scm (vapoursynth)[supported-systems]: Remove
aarch64-linux from the supported-systems.
2017-08-07 07:24:17 +03:00
Tobias Geerinckx-Rice 74033bbcc3
gnu: youtube-dl: Update to 2017.08.06.
* gnu/packages/video.scm (youtube-dl): Update to 2017.08.06.
2017-08-07 05:28:34 +02:00
Tobias Geerinckx-Rice d8af4f6dde
gnu: ntfs-3g: Update to 2017.3.23.
* gnu/packages/linux.scm (ntfs-3g): Update to 2017.3.23.
[source]: Remove patch.
* gnu/packages/patches/ntfs-3g-CVE-2017-0358.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-07 02:01:34 +02:00
Tobias Geerinckx-Rice 8bad0c0bbb
gnu: ntfs-3g: Use HTTPS for the home page as well.
* gnu/packages/linux.scm (ntfs-3g)[home-page]: Use HTTPS.
2017-08-07 02:01:33 +02:00
Tobias Geerinckx-Rice ea94aff7da
gnu: wimlib: Update to 1.12.0.
* gnu/packages/backup.scm (wimlib): Update to 1.12.0.
2017-08-07 02:01:32 +02:00
Tobias Geerinckx-Rice 9d217d277e
gnu: r-bsgenome-hsapiens-ucsc-hg19: Restore original hash.
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19)[source]:
Restore hash from before the tarball changed in place.  It changed back.

This reverts commit fd40857938.
2017-08-07 01:58:39 +02:00
Leo Famulari 46f3c8f289
gnu: khal: Don't propagate vdirsyncer.
* gnu/packages/calendar.scm (khal)[propagated-inputs]: Move vdirsyncer ...
[native-inputs]: ... here.
2017-08-06 16:58:03 -04:00
Leo Famulari fd8f946379
gnu: python-icalendar: Update to 3.11.6.
* gnu/packages/python.scm (python-icalendar): Update to 3.11.6.
2017-08-06 16:58:02 -04:00
Leo Famulari 03776ebd36
gnu: mpg123: Update to 1.25.4.
* gnu/packages/mp3.scm (mpg123): Update to 1.25.4.
2017-08-06 16:58:02 -04:00
Kei Kebreau b0c95908c0
gnu: freedoom: Update to 0.11.3.
* gnu/packages/games.scm (freedoom): Update to 0.11.3.
[arguments]: Remove unnecessary "no" phase.
2017-08-06 14:13:07 -04:00
Kei Kebreau f7b60fdc36
gnu: deutex: Update to 5.0.0.
* gnu/packages/game-development.scm (deutex): Update to 5.0.0.
[source]: Change upstream URI.
[arguments]: Enable tests and restore normal "configure" and "install"
phases.
[native-inputs]: Add asciidoc.
2017-08-06 14:13:07 -04:00
Efraim Flashner 403097d26d
gnu: Add motti.
* gnu/packages/motti.scm (motti): New variable.
2017-08-06 19:13:33 +03:00
Efraim Flashner b7ac10e6da
gnu: keepassx: Superseded by keepassxc.
* gnu/packages/password-utils.scm (keepassx)[properties]: New field.
2017-08-06 19:13:32 +03:00
Efraim Flashner 99672f7b1d
gnu: Add keepassxc.
* gnu/packages/password-utils.scm (keepassxc): New variable.
2017-08-06 19:13:06 +03:00
Efraim Flashner 3ea2eaa8f3
gnu: python-efl: Update to 1.20.0.
* gnu/packages/enlightenment.scm (python-efl): Update to 1.20.0.
[source]: Add alternate source uri.
[arguments]: Enable tests.
2017-08-06 18:13:09 +03:00
Efraim Flashner 87cd1f5c2a
gnu: efl: Update to 1.20.1.
* gnu/packages/enlightenment.scm (efl): Update to 1.20.1.
2017-08-06 18:13:05 +03:00
Efraim Flashner 3bfee8ff02
gnu: make-u-boot-package: Don't unnecessarily cross-compile.
* gnu/packages/bootloaders.scm (make-u-boot-package)[native-inputs]: Only
use cross-gcc and cross-binutils if compiling for a different
architecture.
[arguments]: Only use cross compiling make-flags if cross compiling.
2017-08-06 18:13:03 +03:00
Danny Milosavljevic 18c6a7b4c8
gnu: Add python-flask-httpauth.
* gnu/packages/python.scm (python-flask-httpauth, python2-flask-httpauth):
New variables.
2017-08-06 13:35:07 +02:00
ng0 abd8825f90
gnu: Add font-open-dyslexic.
* gnu/packages/fonts.scm (font-open-dyslexic): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-06 10:49:52 +05:30
Vasile Dumitrascu 799097e445
gnu: gnucash: Update to 2.6.17.
* gnu/packages/gnucash.scm (gnucash): Update to 2.6.17.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-06 10:01:56 +05:30
Mark H Weaver f167595ba1
Merge branch 'master' into core-updates 2017-08-06 00:23:20 -04:00
Mark H Weaver e3df6938ac
gnu: libtasn1: Add replacement to fix CVE-2017-10790.
Based on commit 01a61d7040
by Leo Famulari <leo@famulari.name>.

* gnu/packages/patches/libtasn1-CVE-2017-10790.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (libtasn1)[replacement]: New field.
(libtasn1/fixed): New variable.
2017-08-06 00:21:09 -04:00
Leo Famulari 01a61d7040
gnu: libtasn1: Fix CVE-2017-10790.
* gnu/packages/patches/libtasn1-CVE-2017-10790.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (libtasn1/fixed)[source]: Use it.
2017-08-05 20:17:53 -04:00
Danny Milosavljevic 9833bcfc08
build: Allow mounting of entire disks.
* gnu/build/file-systems.scm (disk-partitions): Also return entire drives.
2017-08-05 18:49:33 +02:00
Feng Shu 91d94e28ec
gnu: emacs-exwm-x: Do not set DISPLAY.
* gnu/packages/emacs.scm (emacs-exwm-x): Do not set DISPLAY. The issue has
been fixed upstream in exwm-0.15.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-05 18:58:58 +05:30
Feng Shu e78e38a4bb
gnu: emacs-exwm: Update to 0.15.
* gnu/packages/emacs.scm (emacs-exwm): Update to 0.15.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-05 18:48:54 +05:30
Marius Bakke 7f171fdaad
gnu: git: Update to 2.14.0.
* gnu/packages/version-control.scm (git): Update to 2.14.0.
2017-08-05 14:07:43 +02:00
Marius Bakke eedcfa704e
gnu: lftp: Update to 4.7.8.
* gnu/packages/ftp.scm (lftp): Update to 4.7.8.
2017-08-05 14:07:42 +02:00
Julien Lepiller 3d5d87a3ae
gnu: Add cubicle.
* gnu/packages/maths.scm (cubicle): New variable.
2017-08-05 10:11:42 +02:00
Ludovic Courtès a56bf101c6
gnu: perl: Work around more "dotless @INC" build issues.
* gnu/packages/web.scm (perl-www-curl)[arguments]: Add 'set-search-path'
phase.
* gnu/packages/bioinformatics.scm (ngs-sdk)[arguments]: Augment
'configure' phase to set PERL5LIB.
* gnu/packages/image.scm (steghide)[arguments]: Add #:phases argument.
2017-08-05 00:31:26 +02:00
Ludovic Courtès 240d3ceff7
gnu: python-argcomplete: Add dependency on the full Bash.
Fixes a regression introduced in
704243e0c6.

* gnu/packages/python.scm (python-argcomplete)[native-inputs]: Add BASH.
2017-08-05 00:31:26 +02:00
Ludovic Courtès 90ea83ee95
gnu: bluez: Work around test failure on ARM.
This aims to skip the segfaulting test at
<https://hydra.gnu.org/build/2195551>.

* gnu/packages/linux.scm (bluez)[arguments]: Add #:make-flags
when (%current-system) is "armhf-linux".
2017-08-05 00:02:55 +02:00
Julien Lepiller 1cec346232
gnu: php: Update to 7.1.8.
* gnu/packages/patches/gd-CVE-2017-7890.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it
* gnu/packages/php.scm (php): Update to 7.1.8.
2017-08-04 18:58:33 +02:00
Ricardo Wurmus 8d6c845d68
gnu: Add r-crosstalk.
* gnu/packages/web.scm (r-crosstalk): New variable.
2017-08-04 11:23:53 +02:00
Ricardo Wurmus a3cd23b639
gnu: Add r-shiny.
* gnu/packages/web.scm (r-shiny): New variable.
2017-08-04 11:23:53 +02:00
Ricardo Wurmus 0b0aa76fa8
gnu: Add js-es5-shim.
* gnu/packages/javascript.scm (js-es5-shim): New variable.
2017-08-04 11:23:53 +02:00
Ricardo Wurmus 4f65067bde
gnu: Add js-selectize.
* gnu/packages/javascript.scm (js-selectize): New variable.
2017-08-04 11:23:53 +02:00
Ricardo Wurmus c4abc94d2b
gnu: Add js-datatables.
* gnu/packages/javascript.scm (js-datatables): New variable.
2017-08-04 11:23:53 +02:00
Ricardo Wurmus a6bbb2a0d8
gnu: Add js-highlight.
* gnu/packages/javascript.scm (js-highlight): New variable.
2017-08-04 11:23:53 +02:00
Ricardo Wurmus 3f48403aaf
gnu: Add js-strftime.
* gnu/packages/javascript.scm (js-strftime): New variable.
2017-08-04 11:23:52 +02:00
Ricardo Wurmus 68ffb6c586
gnu: Add js-json2.
* gnu/packages/javascript.scm (js-json2): New variable.
2017-08-04 11:23:52 +02:00
Ricardo Wurmus ed69963b03
gnu: Add js-html5shiv.
* gnu/packages/javascript.scm (js-html5shiv): New variable.
2017-08-04 11:23:52 +02:00
Tobias Geerinckx-Rice b316caaa9c
gnu: python-lz4: Fix typo in synopsis.
* gnu/packages/compression.scm (python-lz4)[synopsis]: Fix typo.
2017-08-04 05:00:26 +02:00
Tobias Geerinckx-Rice e9f6a935fb
gnu: python-lz4: Update to 0.10.1.
* gnu/packages/compression.scm (python-lz4): Update to 0.10.1.
[native-inputs]: Add python-setuptools-scm.
2017-08-04 04:59:48 +02:00
Tobias Geerinckx-Rice 54360c917e
gnu: diffoscope: Use HTTPS.
* gnu/packages/package-management.scm (diffoscope)[home-page]: Use HTTPS.
2017-08-04 04:34:41 +02:00
Tobias Geerinckx-Rice 3b4018d6f2
gnu: sshoot: Update to 1.2.6.
* gnu/packages/vpn.scm (sshoot): Update to 1.2.6.
[home-page]: Update to new project home.
2017-08-04 04:34:41 +02:00
Tobias Geerinckx-Rice f58be41761
gnu: fabric: Update to 1.13.2.
* gnu/packages/admin.scm (fabric): Update to 1.13.2.  Remove outdated comments.
[source]: Remove ‘patches’.
* gnu/packages/patches/fabric-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-04 03:46:49 +02:00
Tobias Geerinckx-Rice 19dd5097d9
gnu: certbot, python-acme: Update to 0.17.0.
* gnu/packages/tls.scm (certbot, python-acme, python2-acme): Update to 0.17.0.
2017-08-04 02:32:53 +02:00
Tobias Geerinckx-Rice 9a7fd375a2
gnu: xonsh: Update to 0.5.12.
* gnu/packages/shells.scm (xonsh): Update to 0.5.12.
2017-08-04 02:06:39 +02:00
Tobias Geerinckx-Rice b55d15e795
gnu: cmark: Update to 0.28.0.
* gnu/packages/markup.scm (cmark): Update to 0.28.0.
2017-08-04 01:51:23 +02:00
Tobias Geerinckx-Rice 0a3ecfd29c
gnu: thefuck: Update to 3.19.
* gnu/packages/admin.scm (thefuck): Update to 3.19.
2017-08-04 01:51:23 +02:00
Tobias Geerinckx-Rice 30ac4cc7e6
gnu: zerofree: Update to 1.1.0.
* gnu/packages/linux.scm (zerofree): Update to 1.1.0.
[home-page, source]: Update from old, inaccessible location.
2017-08-04 01:51:22 +02:00
Tobias Geerinckx-Rice 4de4a1cfcc
gnu: zerofree: Expand description.
* gnu/packages/linux.scm (zerofree)[description]: Expand.
2017-08-04 01:51:22 +02:00
Tobias Geerinckx-Rice 7a068459ba
gnu: zerofree: Use ‘install-file’.
* gnu/packages/linux.scm (zerofree)[arguments]: Simplify install phase,
using ‘install-file’.
2017-08-04 01:51:21 +02:00
Tobias Geerinckx-Rice 0f08917df3
gnu: zerofree: Use ‘modify-phases’ syntax.
* gnu/packages/linux.scm (zerofree)[arguments]: Use ‘modify-phases’.
2017-08-04 01:51:21 +02:00
Tobias Geerinckx-Rice 20f8d1dd78
gnu: sshfs-fuse: Update to 2.10.
* gnu/packages/linux.scm (sshfs-fuse): Update to 2.10.
2017-08-04 01:51:20 +02:00
Marius Bakke c89091459f
gnu: freerdp: Update to 2.0.0-rc0 [security fixes].
Fixes CVE-2017-{2834,2835,2836,2837,2838,2839}.

Reported by Leo Famulari in <https://bugs.gnu.org/27939>.

* gnu/packages/rdesktop.scm (freerdp): Update to 2.0.0-rc0.
[source]: Use tarball release. Adjust file-name.
[arguments]: Remove #:phases.
2017-08-04 00:52:52 +02:00
Marius Bakke c9f4f56b24
gnu: git: Enable tests.
* gnu/packages/version-control.scm (git)[arguments]: Remove #:tests?. Add
'patch-tests' phase.
2017-08-04 00:52:13 +02:00
Leo Famulari 81ca29a6d6
gnu: gnupg@1.4: Update to 1.4.22 [fixes CVE-2017-7526].
* gnu/packages/gnupg.scm (gnupg-1): Update to 1.4.22.
2017-08-03 18:06:19 -04:00
Ludovic Courtès c8737b1e41
gnu: icedtea@3.5.0: Properly handle decoding error while substituting.
* gnu/packages/java.scm (icedtea-8)[arguments] <patch-jni-libs>: Change
'encoding-error to 'decoding-error, which is what Guile 2.2 raises when
failing to decode an input file.
2017-08-03 22:46:14 +02:00
Ricardo Wurmus 9e37e537a2
gnu: Add missing references to (gnu packages cran).
This is a follow-up to commit a8cba9dd11.

Reported-by: Efraim Flashner <efraim@flashner.co.il>
2017-08-03 22:15:57 +02:00
Efraim Flashner 7cb6155088
gnu: bioinformatics.scm: Use (gnu packages cran) module.
This is a follow up to a8cba9dd11.

* gnu/packages/bioinformatics.scm: Add (gnu packages cran) to #:use-modules.
2017-08-03 21:39:12 +03:00
Danny Milosavljevic cf189709bc
vm: Use grub-hybrid's grub-mkrescue.
* gnu/system/vm.scm (system-disk-image): Use grub-hybrid's grub-mkrescue.
* gnu/bootlader/grub.scm (grub-mkrescue-bootloader): New variable.
2017-08-03 18:13:03 +02:00
Ricardo Wurmus 2267e4d3f6
gnu: r-purrr: Update to 0.2.3.
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.3.
[propagated-inputs]: Remove r-rcpp and r-lazyeval; add r-rlang.
2017-08-03 17:53:55 +02:00
Ricardo Wurmus ceb802a31c
gnu: r-desc: Update to 1.1.1.
* gnu/packages/statistics.scm (r-desc): Update to 1.1.1.
2017-08-03 17:53:55 +02:00
Ricardo Wurmus 5e0de29892
gnu: r-seqminer: Update to 6.0.
* gnu/packages/bioinformatics.scm (r-seqminer): Update to 6.0.
2017-08-03 17:53:54 +02:00
Ricardo Wurmus 4e0c847d59
gnu: r-wgcna: Update to 1.60.
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.60.
2017-08-03 17:53:54 +02:00
Ricardo Wurmus c8a9b2bcbf
gnu: r-qtl: Update to 1.41-6.
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.41-6.
2017-08-03 17:53:54 +02:00
Ricardo Wurmus 023aa8ff58
gnu: r-seqinr: Update to 3.4-5.
* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.4-5.
2017-08-03 17:53:54 +02:00
Ricardo Wurmus 7150f1c30c
gnu: r-optparse: Update to 1.4.4.
* gnu/packages/bioinformatics.scm (r-optparse): Update to 1.4.4.
2017-08-03 17:53:53 +02:00
Ricardo Wurmus 3f6ec083ec
gnu: r-bookdown: Update to 0.4.
* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.4.
2017-08-03 17:53:53 +02:00
Ricardo Wurmus 85cd755417
gnu: r-tclust: Update to 1.2-7.
* gnu/packages/statistics.scm (r-tclust): Update to 1.2-7.
2017-08-03 17:53:53 +02:00
Ricardo Wurmus 6bb4bfa4bc
gnu: r-car: Update to 2.1-5.
* gnu/packages/statistics.scm (r-car): Update to 2.1-5.
2017-08-03 17:53:53 +02:00
Ricardo Wurmus 0f008abe7a
gnu: r-rcppeigen: Update to 0.3.3.3.0.
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.0.
2017-08-03 17:53:53 +02:00
Ricardo Wurmus 12c3bbb662
gnu: r-pbapply: Update to 1.3-3.
* gnu/packages/statistics.scm (r-pbapply): Update to 1.3-3.
2017-08-03 17:53:52 +02:00
Ricardo Wurmus 4431dd3a4e
gnu: r-vgam: Update to 1.0-4.
* gnu/packages/statistics.scm (r-vgam): Update to 1.0-4.
2017-08-03 17:53:52 +02:00
Ricardo Wurmus 41692b2963
gnu: r-mclust: Update to 5.3.
* gnu/packages/statistics.scm (r-mclust): Update to 5.3.
2017-08-03 17:53:52 +02:00
Ricardo Wurmus 60869fb2f8
gnu: r-flexmix: Update to 2.3-14.
* gnu/packages/statistics.scm (r-flexmix): Update to 2.3-14.
2017-08-03 17:53:52 +02:00
Ricardo Wurmus 62d3afc3d6
gnu: r-fastica: Update to 1.2-1.
* gnu/packages/statistics.scm (r-fastica): Update to 1.2-1.
2017-08-03 17:53:52 +02:00
Ricardo Wurmus df03b6f90c
gnu: r-cowplot: Update to 0.8.0.
* gnu/packages/statistics.scm (r-cowplot): Update to 0.8.0.
2017-08-03 17:53:51 +02:00
Ricardo Wurmus d58faa7f44
gnu: r-rann: Update to 2.5.1.
* gnu/packages/statistics.scm (r-rann): Update to 2.5.1.
2017-08-03 17:53:51 +02:00
Ricardo Wurmus a8c2706de2
gnu: r-statmod: Update to 1.4.30.
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.30.
2017-08-03 17:53:51 +02:00
Ricardo Wurmus 80d1185076
gnu: r-gdata: Update to 2.18.0.
* gnu/packages/statistics.scm (r-gdata): Update to 2.18.0.
2017-08-03 17:53:51 +02:00
Ricardo Wurmus 2c75199c56
gnu: r-sfsmisc: Update to 1.1-1.
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-1.
2017-08-03 17:53:51 +02:00
Ricardo Wurmus 1d256438c8
gnu: r-googlesheets: Update to 0.2.2.
* gnu/packages/statistics.scm (r-googlesheets): Update to 0.2.2.
2017-08-03 17:53:50 +02:00
Ricardo Wurmus 9b9fef0eaf
gnu: r-tidyr: Update to 0.6.3.
* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.3.
2017-08-03 17:53:50 +02:00
Ricardo Wurmus e1cd25bc78
gnu: r-glmnet: Update to 2.0-10.
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-10.
2017-08-03 17:53:50 +02:00
Ricardo Wurmus 1c576cbadb
gnu: r-irlba: Update to 2.2.1.
* gnu/packages/statistics.scm (r-irlba): Update to 2.2.1.
2017-08-03 17:53:50 +02:00
Ricardo Wurmus 81c057ced9
gnu: r-sparsem: Update to 1.77.
* gnu/packages/statistics.scm (r-sparsem): Update to 1.77.
2017-08-03 17:53:50 +02:00
Ricardo Wurmus 127b926bc1
gnu: r-segmented: Update to 0.5-2.1.
* gnu/packages/statistics.scm (r-segmented): Update to 0.5-2.1.
2017-08-03 17:53:49 +02:00
Ricardo Wurmus fe9917284f
gnu: r-xml: Update to 3.98-1.9.
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.9.
2017-08-03 17:53:49 +02:00
Ricardo Wurmus cc8ba9b69c
gnu: r-rmarkdown: Update to 1.6.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.6.
2017-08-03 17:53:49 +02:00
Ricardo Wurmus 7c172eacfa
gnu: r-rcpparmadillo: Update to 0.7.900.2.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.900.2.0.
2017-08-03 17:53:49 +02:00
Ricardo Wurmus 1c41d51743
gnu: r-plotrix: Update to 3.6-5.
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-5.
2017-08-03 17:53:49 +02:00
Ricardo Wurmus 76040b8561
gnu: r-readr: Update to 1.1.1.
* gnu/packages/statistics.scm (r-readr): Update to 1.1.1.
2017-08-03 17:53:48 +02:00
Ricardo Wurmus d8048a1212
gnu: r-withr: Update to 2.0.0.
* gnu/packages/statistics.scm (r-withr): Update to 2.0.0.
2017-08-03 17:53:48 +02:00
Ricardo Wurmus f212bf84ab
gnu: r-git2r: Update to 0.19.0.
* gnu/packages/statistics.scm (r-git2r): Update to 0.19.0.
2017-08-03 17:53:48 +02:00
Ricardo Wurmus 58e1ce86ab
gnu: r-checkmate: Update to 1.8.3.
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.3.
2017-08-03 17:53:48 +02:00
Ricardo Wurmus 63f934e672
gnu: r-backports: Update to 1.1.0.
* gnu/packages/statistics.scm (r-backports): Update to 1.1.0.
2017-08-03 17:53:48 +02:00
Ricardo Wurmus c832d326a1
gnu: r-formula: Update to 1.2-2.
* gnu/packages/statistics.scm (r-formula): Update to 1.2-2.
2017-08-03 17:53:47 +02:00
Ricardo Wurmus f05c6275b7
gnu: r-r6: Update to 2.2.2.
* gnu/packages/statistics.scm (r-r6): Update to 2.2.2.
2017-08-03 17:53:47 +02:00
Ricardo Wurmus b07c8c0156
gnu: r-knitr: Update to 1.16.
* gnu/packages/statistics.scm (r-knitr): Update to 1.16.
2017-08-03 17:53:47 +02:00
Ricardo Wurmus 6dc86e8dfc
gnu: r-formatr: Update to 1.5.
* gnu/packages/statistics.scm (r-formatr): Update to 1.5.
2017-08-03 17:53:47 +02:00
Ricardo Wurmus 12cd797541
gnu: r-evaluate: Update to 0.10.1.
* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.1.
2017-08-03 17:53:47 +02:00
Ricardo Wurmus d5ce380711
gnu: r-dbi: Update to 0.7.
* gnu/packages/statistics.scm (r-dbi): Update to 0.7.
2017-08-03 17:53:47 +02:00
Ricardo Wurmus 831858a7d3
gnu: r-bit64: Update to 0.9-7.
* gnu/packages/statistics.scm (r-bit64): Update to 0.9-7.
2017-08-03 17:53:46 +02:00
Ricardo Wurmus 6fb21ed2a3
gnu: r-mgcv: Update to 1.8-18.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-18.
2017-08-03 17:53:46 +02:00
Ricardo Wurmus dbeda1b4a0
gnu: r-matrix: Update to 1.2-10.
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-10.
2017-08-03 17:53:46 +02:00
Ricardo Wurmus 74b037df64
gnu: r-foreign: Update to 0.8-69.
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-69.
2017-08-03 17:53:46 +02:00
Ricardo Wurmus af1eeabe89
gnu: r-boot: Update to 1.3-20.
* gnu/packages/statistics.scm (r-boot): Update to 1.3-20.
2017-08-03 17:53:46 +02:00
Ricardo Wurmus e584b9fc1b
gnu: r-curl: Update to 2.8.1.
* gnu/packages/web.scm (r-curl): Update to 2.8.1.
2017-08-03 17:53:45 +02:00
Ricardo Wurmus 53deffe5e9
gnu: r-htmlwidgets: Update to 0.9.
* gnu/packages/web.scm (r-htmlwidgets): Update to 0.9.
2017-08-03 17:53:45 +02:00
Ricardo Wurmus 850151058d
gnu: r-htmltools: Update to 0.3.6.
* gnu/packages/web.scm (r-htmltools): Update to 0.3.6.
2017-08-03 17:53:45 +02:00
Ricardo Wurmus a1e54db2ac
gnu: r-servr: Update to 0.6.
* gnu/packages/web.scm (r-servr): Update to 0.6.
2017-08-03 17:53:45 +02:00
Ricardo Wurmus 9fe794f0f7
gnu: r-jsonlite: Update to 1.5.
* gnu/packages/web.scm (r-jsonlite): Update to 1.5.
2017-08-03 17:53:45 +02:00
Ricardo Wurmus 2d81bc16a9
gnu: r-httpuv: Update to 1.3.5.
* gnu/packages/web.scm (r-httpuv): Update to 1.3.5.
2017-08-03 17:53:44 +02:00
Ricardo Wurmus 0f2eee0d96
gnu: r-pracma: Update to 2.0.7.
* gnu/packages/maths.scm (r-pracma): Update to 2.0.7.
2017-08-03 17:53:44 +02:00
Ricardo Wurmus 64c6712d03
gnu: r-knitrbootstrap: Update to 1.0.1.
* gnu/packages/statistics.scm (r-knitrbootstrap): Update to 1.0.1.
2017-08-03 17:53:44 +02:00
Ricardo Wurmus c628b8418a
gnu: r-ranger: Update to 0.8.0.
* gnu/packages/statistics.scm (r-ranger): Update to 0.8.0.
[propagated-inputs]: Add r-matrix and r-rcppeigen.
2017-08-03 17:53:44 +02:00
Ricardo Wurmus cc9a778ecc
gnu: r-hmisc: Update to 4.0-3.
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-3.
[propagated-inputs]: Remove r-base64.
2017-08-03 17:53:43 +02:00
Ricardo Wurmus f9b3760636
gnu: r-plotly: Update to 4.7.1.
* gnu/packages/statistics.scm (r-plotly): Update to 4.7.1.
[propagated-inputs]: Add r-crosstalk, r-data-table, r-htmltools, and
r-rcolorbrewer.
2017-08-03 17:53:43 +02:00
Ricardo Wurmus d59050823e
gnu: r-igraph: Update to 1.1.2.
* gnu/packages/statistics.scm (r-igraph): Update to 1.1.2.
[propagated-inputs]: Remove r-nmf; add r-matrix and r-pkgconfig.
2017-08-03 17:53:43 +02:00
Ricardo Wurmus 7b3688150b
gnu: r-purrr: Update to 0.2.2.2.
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.2.2.
[propagated-inputs]: Remove r-bh and r-dplyr; add r-tibble.
2017-08-03 17:53:43 +02:00
Ricardo Wurmus 5fc74f24bf
gnu: r-devtools: Update to 1.13.3.
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.3.
[propagated-inputs]: Remove r-curl, r-digest, r-evaluate, r-roxygen2, and
r-rversions.
2017-08-03 17:53:43 +02:00
Ricardo Wurmus aad948a0ea
gnu: r-tibble: Update to 1.3.3.
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.3.
[propagated-inputs]: Remove r-lazyeval, add r-rlang.
2017-08-03 17:53:43 +02:00
Ricardo Wurmus a40b2c2129
gnu: r-dplyr: Update to 0.7.2.
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.2.
[propagated-inputs]: Remove r-lazyeval, r-dbi; add r-rlang, r-plogr, r-glue,
r-pkgconfig, r-bindrcpp.
2017-08-03 17:53:42 +02:00
Ricardo Wurmus 4bb0b4cc0a
gnu: Add r-bindrcpp.
* gnu/packages/cran.scm (r-bindrcpp): New variable.
2017-08-03 17:53:42 +02:00
Ricardo Wurmus eed58a0886
gnu: Add r-bindr.
* gnu/packages/cran.scm (r-bindr): New variable.
2017-08-03 17:53:42 +02:00
Ricardo Wurmus a8cba9dd11
gnu: r-rcpp: Move to (gnu packages cran).
* gnu/packages/statistics.scm (r-rcpp): Move from here...
* gnu/packages/cran.scm (r-rcpp): ...to here.
2017-08-03 17:53:42 +02:00
Ricardo Wurmus 736332c79c
gnu: r-rcpp: Update to 0.12.12.
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.12.
2017-08-03 17:53:42 +02:00
Ricardo Wurmus 847b457253
gnu: r-plogr: Move to (gnu packages cran).
* gnu/packages/statistics.scm (r-plogr): Move from here...
* gnu/packages/cran.scm (r-plogr): ...to here.
2017-08-03 17:53:41 +02:00
Ricardo Wurmus 5bee6bf409
gnu: Add r-glue.
* gnu/packages/cran.scm (r-glue): New variable.
2017-08-03 17:53:41 +02:00
Danny Milosavljevic dd4b7476ec
gnu: Add grub-hybrid.
* gnu/packages/bootloaders.scm (grub-hybrid): New variable.
2017-08-03 16:35:34 +02:00
Ben Woodcroft 75e6639f36
gnu: htseq: Use PyPI URI.
This is a follow-up to 92971d68ac.

* gnu/packages/bioinformatics.scm (htseq)[source]: Use 'pypi-uri'.
2017-08-03 21:08:13 +10:00
Ben Woodcroft 92971d68ac
gnu: htseq: Update to 0.9.1.
* gnu/packages/bioinformatics.scm (htseq): Update to 0.9.1.
[arguments]: Use python-3 by removing field.
[native-inputs]: Add 'python-cython'.
[propagated-inputs]: Use python3 numpy package.
[inputs]: Use python3 pysam package.  Add 'python-matplotlib'.
(python2-htseq): New variable.
(clipper)[inputs]: Use it.
2017-08-03 21:02:30 +10:00
Efraim Flashner a8ead6f91b
gnu: vc: Limit to x86_64 and i686.
* gnu/packages/maths.scm (vc)[supported-systems]: New field.
2017-08-03 13:34:18 +03:00
Manolis Ragkousis 5638d71502
gnu: openscenegraph: Add 'Release' configure flag.
* gnu/packages/graphics.scm (openscenegraph)[arguments]: Add "-DCMAKE_BUILD_TYPE=Release".
2017-08-03 10:35:31 +03:00
Eric Bavier 68a29ab8d0
gnu: Add LeoCAD.
* gnu/packages/lego.scm (leocad): New variable.
2017-08-03 00:33:02 -05:00
Tobias Geerinckx-Rice 5d8312f1c6
gnu: youtube-dl: Update to 2017.07.30.1.
* gnu/packages/video.scm (youtube-dl): Update to 2017.07.30.1.
2017-08-03 05:31:24 +02:00
Tobias Geerinckx-Rice 6862c72373
gnu: tor: Update to 0.3.0.10.
* gnu/packages/tor.scm (tor): Update to 0.3.0.10.
2017-08-03 01:56:22 +02:00
Ludovic Courtès 49962b15a1
activation: Make sure /etc exists.
Fixes <http://bugs.gnu.org/27146>.
Reported by ng0 <ng0@pragmatique.xyz>.

* gnu/build/activation.scm (activate-etc): Add call to 'mkdir-p'.
2017-08-03 00:35:59 +02:00
Efraim Flashner edd08fb7ac
gnu: glibc@2.22: Fix security issues.
Fixes CVE-2015-{5180,7547}, CVE-2016-{3075,3706,4429}.

* gnu/packages/base.scm (glibc@2.22)[source]: Add patches.
* gnu/packages/patches/glibc-CVE-2015-7547.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-02 21:51:35 +03:00
Efraim Flashner a0ae64a334
gnu: glibc@2.23: Fix CVE-2015-5180, CVE-2016-{3075,3706,4429}.
* gnu/packages/base.scm (glibc@2.23)[source]: Add patches.
* gnu/packages/patches/glibc-CVE-2016-3075.patch,
gnu/packages/patches/glibc-CVE-2016-3706.patch,
gnu/packages/patches/glibc-CVE-2016-4429.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2017-08-02 21:51:33 +03:00
Efraim Flashner 575e5e4e51
gnu: glibc@2.24: Fix CVE-2015-5180.
* gnu/packages/base.scm (glibc@2.24)[source]: Add patch.
* gnu/packages/patches/glibc-CVE-2015-5180.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-02 21:51:31 +03:00
Leo Famulari 2c5cf84430
gnu: python2-conda: Fix build by building with enum34.
* gnu/packages/package-management.scm (python2-conda): Use 'python2-variant'.
[native-inputs]: Add python2-enum34.
2017-08-02 14:39:33 -04:00
Manolis Ragkousis 9ef5940ce4
gnu: calibre: Add python2-msgpack as an input.
* gnu/packages/ebook.scm (calibre)[inputs]: Add python2-msgpack.
2017-08-02 20:20:12 +03:00
Efraim Flashner 721d7a6912
gnu: gcc@4.7: Don't built on aarch64.
* gnu/packages/gcc.scm (gcc@4.7, gcc@4.8, gcc@4.9)[supported-systems]:
New field.
2017-08-02 19:14:26 +03:00
Leo Famulari 696f1d0fb1
gnu: libpng-apng: Be sure to apply the APNG patch.
* gnu/packages/image.scm (libpng-apng)[arguments]: Check the return status of
the patching procedures.
2017-08-02 11:17:57 -04:00
ng0 e0958c2df8
gnu: libpng-apng: Update to 1.6.28.
Fixes <https://bugs.gnu.org/27556>.

* gnu/packages/image.scm (libpng-apng): Update to 1.6.28.
Remove inherit of 'libpng'.
[version]: Use own version, remove 'package-version libpng'.
[source]: Don't inherit the source of libpng.
[arguments]: Update hash of libpng-apng source.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-08-02 11:10:31 -04:00
Thomas Danckaert 33485fa913
gnu: eyed3: Update to 0.8, build with python3.
* gnu/packages/mp3.scm (eyed3): [source] Update to 0.8.
[arguments]: Disable tests; don't use python-2.
[propagated-inputs]: Add python-six and python-grako.
[native-inputs]: Remove.
2017-08-02 14:08:33 +02:00
Thomas Danckaert a70b03d413
gnu: Add python-grako
* gnu/packages/python.scm (python-grako): New variable.
2017-08-02 14:08:33 +02:00
Thomas Danckaert 0abf526420
gnu: hdf4: Update to 4.12.13.
* gnu/packages/maths.scm (hdf4): Update to 4.12.13.
2017-08-02 14:08:24 +02:00
Tobias Geerinckx-Rice ced2d2b7ca
gnu: libvirt: Update to 3.6.0.
* gnu/packages/virtualization.scm (libvirt): Update to 3.6.0.
2017-08-02 07:15:21 +02:00
Tobias Geerinckx-Rice 2e508b6dc0
gnu: libvirt: Use HTTPS.
* gnu/packages/virtualization.scm (libvirt)[source, home-page]: Use HTTPS.
2017-08-02 07:15:21 +02:00
Roel Janssen 2f06dc0435
gnu: Add r-rlang.
* gnu/packages/statistics.scm (r-rlang): New variable.
2017-08-02 00:57:39 +02:00
Roel Janssen f1915a5dd0
gnu: r-deseq2: Update to 1.16.1.
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.16.1.
2017-08-02 00:33:23 +02:00
Roel Janssen fd215c2978
gnu: r-annotationforge: Update to 1.18.1.
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.18.1.
2017-08-02 00:33:07 +02:00
Roel Janssen bd4a0bab5f
gnu: r-category: Update to 2.42.1.
* gnu/packages/bioinformatics.scm (r-category): Update to 2.42.1.
2017-08-02 00:32:46 +02:00
Roel Janssen 0ff478344b
gnu: r-biocstyle: Update to 2.4.1.
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.4.1.
2017-08-02 00:32:31 +02:00
Roel Janssen 9c4348d8c4
gnu: r-dnacopy: Update to 1.50.1.
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.50.1.
2017-08-02 00:32:11 +02:00
Roel Janssen 3ec25eb2a8
gnu: r-iranges: Update to 2.10.2.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.10.2.
2017-08-02 00:31:46 +02:00
Roel Janssen 6252dd0f15
gnu: r-genomeinfodb: Update to 1.12.2.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.12.2.
2017-08-02 00:31:28 +02:00
Roel Janssen 48f5d283b2
gnu: r-variantannotation: Update to 1.22.3.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.22.3.
2017-08-02 00:31:08 +02:00
Roel Janssen 1b4738e23c
gnu: r-limma: Update to 3.32.5.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.32.5.
2017-08-02 00:30:49 +02:00
Roel Janssen 1898a7832f
gnu: r-biobase: Update to 2.36.2.
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.36.2.
2017-08-02 00:30:27 +02:00
Roel Janssen 62eb93a7d0
gnu: r-annotationdbi: Update to 1.38.2.
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.38.2.
2017-08-02 00:28:32 +02:00
Roel Janssen 0c6494a1db
gnu: r-biomart: Update to 2.32.1.
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.32.1.
2017-08-02 00:28:16 +02:00
Roel Janssen 1ff74d074e
gnu: r-biocparallel: Update to 1.10.1.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.10.1.
2017-08-02 00:27:57 +02:00
Roel Janssen 5077bc3e2e
gnu: r-biostrings: Update to 2.44.2.
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.44.2.
2017-08-02 00:27:35 +02:00
Roel Janssen adf5d0a0bc
gnu: r-delayedarray: Update to 0.2.7.
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.2.7.
2017-08-02 00:27:16 +02:00
Roel Janssen f41150f13d
gnu: r-summarizedexperiment: Update to 1.6.3.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.6.3.
2017-08-02 00:26:55 +02:00
Roel Janssen 26760c80cd
gnu: r-genomicalignments: Update to 1.12.1.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.1.
2017-08-02 00:26:33 +02:00
Roel Janssen 15afa9bf8f
gnu: r-rtracklayer: Update to 1.36.4.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.36.4.
2017-08-02 00:26:00 +02:00
Roel Janssen 8cfaa9ab4e
gnu: r-genomicfeatures: Update to 1.28.4.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.28.4.
2017-08-02 00:25:26 +02:00
Roel Janssen 9eb2714625
gnu: r-copywriter: Update to 2.8.1.
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.8.1.
2017-08-02 00:25:00 +02:00
Roel Janssen bfa0d1e773
gnu: r-sva: Update to 3.24.4.
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.24.4.
2017-08-02 00:24:27 +02:00
Roel Janssen 8060a61798
gnu: r-rsqlite: Update to 2.0.
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.0.
2017-08-02 00:23:16 +02:00
Roel Janssen 796237a9a4
gnu: Add r-blob.
* gnu/packages/statistics.scm (r-blob): New variable.
2017-08-02 00:22:33 +02:00
Roel Janssen aa184803f8
gnu: Add r-pkgconfig.
* gnu/packages/statistics.scm (r-pkgconfig): New variable.
2017-08-02 00:21:40 +02:00
Marius Bakke aa9780daf9
Merge branch 'master' into core-updates 2017-08-01 23:42:28 +02:00
Marius Bakke fc8f0631b4
gnu: re2: Update to 2017-08-01.
* gnu/packages/regex.scm (re2): Update to 2017-08-01.
2017-08-01 23:37:20 +02:00
Marius Bakke 1926fd2baa
gnu: maim: Update to 5.4.66.
* gnu/packages/xdisorg.scm (maim): Update to 5.4.66.
2017-08-01 23:35:31 +02:00
Marius Bakke 7d960db1e3
gnu: slop: Update to 7.3.48.
* gnu/packages/xdisorg.scm (slop): Update to 7.3.48.
2017-08-01 23:35:03 +02:00
Marius Bakke b73e49f595
gnu: git: Update to 2.13.4.
* gnu/packages/version-control.scm (git): Update to 2.13.4.
2017-08-01 23:34:41 +02:00
Roel Janssen 14fce399cc
gnu: r-foreign: Update hash after upstream tarball change.
* gnu/packages/statistics.scm (r-foreign):  Update hash.  The only difference
  in the tarball is the metadata.  The contents are identical.
2017-08-01 23:07:58 +02:00
Roel Janssen cdf124c607
gnu: r-foreign: Remove duplicate recipe.
* gnu/packages/statistics.scm (r-foreign): Remove duplicate recipe.
2017-08-01 23:06:02 +02:00
Leo Famulari d0386db493
gnu: rapidjson: Update to 1.1.0.
* gnu/packages/web.scm (rapidjson): Update to 1.1.0.
[source]: Remove snippet.
2017-08-01 14:42:44 -04:00
ng0 f2e1271809
gnu: Add pidentd.
* gnu/packages/networking.scm (pidentd): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-08-01 20:57:51 +03:00
Kei Kebreau 89c9445aa2
gnu: hyperrogue: Update to 10.0e.
* gnu/packages/games.scm (hyperrogue): Update to 10.0e.
[arguments]: Adjust accordingly.
2017-08-01 12:14:54 -04:00
Efraim Flashner d931a4bbeb
gnu: metabat: Limit to x86_64 and i686 only.
* gnu/packages/bioinformatics.scm (metabat)[supported-systems]: New field.
2017-08-01 17:28:35 +03:00
Kyle Meyer 4bfdf034e2
gnu: Add emacs-yasnippet-snippets.
* gnu/packages/emacs.scm (emacs-yasnippet-snippets): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-01 15:33:07 +02:00
Kyle Meyer 1f0d47059d
gnu: emacs-yasnippet: Upgrade to 0.12.0.
* gnu/packages/emacs.scm (emacs-yasnippet): Upgrade to 0.12.0.
[source]: Remove an uninstalled directory from yas-snippet-dirs.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-01 15:32:59 +02:00
Ludovic Courtès 04b6d6f7f7
gnu: guile-ssh: Update to 0.11.2.
* gnu/packages/ssh.scm (guile-ssh): Update to 0.11.2.
[source]: Remove 'patches', 'modules', and 'snippet'.
* gnu/packages/patches/guile-ssh-channel-finalization.patch,
gnu/packages/patches/guile-ssh-double-free.patch,
gnu/packages/patches/guile-ssh-rexec-bug.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-08-01 15:32:07 +02:00
Adonay Felipe Nogueira 12235a124f
gnu: artanis: Unbundled guile-json and version according to documentation.
* gnu/packages/guile.scm (artanis): Unbundled guile-json and version
according to documentation.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-01 15:32:07 +02:00
Muriithi Frederick Muriuki 269504a797
gnu: python-pbr-minimal: Update to 3.0.1
* gnu/packages/python.scm (python-pbr-minimal): Update to 3.0.1
[source]: Update hash and remove patch.
* gnu/packages/patches/python-pbr-fix-man-page-support.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-08-01 15:21:52 +03:00
Leo Famulari 3d0fbd3c2f
gnu: libgit2: Enable SHA-1 collision detection.
* gnu/packages/version-control.scm (libgit2)[arguments]: Enable '-DUSE_SHA1DC'
in #:configure-flags.
2017-08-01 01:02:53 -04:00
Ben Woodcroft befb2c0e6e
gnu: ruby-bio-commandeer: Update to 0.2.0.
* gnu/packages/ruby.scm (ruby-bio-commandeer): Update to 0.2.0.
2017-08-01 14:09:07 +10:00
Ludovic Courtès e1ecc8908e
gnu: libmicrohttpd: Update to 0.9.55.
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.55.
[arguments]: Add 'add-missing-LDFLAGS' phase.
2017-07-31 22:51:34 +02:00
Ludovic Courtès a6b5af0cff
gnu: xf86-video-intel: Update snapshot.
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2100efa.
Introduce 'revision' variable.
2017-07-31 22:10:34 +02:00
Ludovic Courtès f0732ee485
gnu: guile-bytestructures: Install .go files to lib/guile/X.Y.
* gnu/packages/guile.scm (guile-bytestructures)[arguments]: Install .go
files to OBJECT-DIR, defined as OUT/lib/guile/X.Y/site-ccache.
2017-07-31 17:36:24 +02:00
ng0 54727850c3
gnu: tor: Remove '--enable-expensive-hardening' option.
* gnu/packages/tor.scm (tor)[arguments]: Remove '--enable-expensive-hardening' option.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-31 17:06:45 +02:00
Peter Mikkelsen ee217402f7
gnu: erlang: Update to 20.0.
* gnu/packages/erlang.scm (erlang): Update to 20.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-31 17:02:36 +02:00
Ludovic Courtès c27e02bf6b
gnu: network-manager: Add dependency on Newt.
Suggested by Mark H Weaver.

* gnu/packages/gnome.scm (network-manager)[inputs]: Add NEWT.
2017-07-31 15:23:06 +02:00
Ludovic Courtès 44b0faee6b
gnu: guile-git: Skip faulty tests on non-x86_64.
Reported by Mark H Weaver.

* gnu/packages/guile.scm (guile-git)[arguments]: Add 'skip-tests' phase
unless on x86_64-linux.
2017-07-31 15:23:06 +02:00
Ludovic Courtès 8ecba89b77
gnu: libgit2: Add "debug" output.
* gnu/packages/version-control.scm (libgit2)[outputs]: New field.
2017-07-31 15:23:06 +02:00
Ludovic Courtès 58dce7bfb5
gnu: libgit2: Update to 0.26.0.
* gnu/packages/version-control.scm (libgit2): Update to 0.26.0.  Remove
"libgit2-use-after-free.patch".
* gnu/packages/patches/libgit2-use-after-free.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-07-31 15:23:05 +02:00
Efraim Flashner 6ce8fe4cd0
gnu: efl: Add wayland support.
* gnu/packages/enlightenment.scm (efl)[inputs]: Add wayland-protocols.
Move mesa ...
[propagated-inputs]: ... to here. Add libinput, libxkbcommon, wayland.
[arguments]: Add flags to enable wayland, elput and drm.
2017-07-31 15:16:23 +03:00
Efraim Flashner 0d3ecf77ba
gnu: gst-plugins-good: Update disable-failing-tests phase.
* gnu/packages/gstreamer.scm (gst-plugins-good)[arguments]: Change the
list of tests to disable during 'disable-failing-tests phase.
2017-07-31 15:16:21 +03:00
Leo Famulari 57f57a7bbf
services: ntp: Use the NTP pool via the 'guix' zone.
* gnu/services/networking.scm (%ntp-servers): Use *.guix.pool.ntp.org.
2017-07-30 20:21:36 -04:00
Leo Famulari 6484e82d4c
gnu: biber-next: Update to 2.7.
* gnu/packages/tex.scm (biber): Update to 2.7.
2017-07-30 20:10:43 -04:00
Leo Famulari 1fdf14e170
gnu: perl-datetime-timezone: Update to 2.13.
* gnu/packages/perl.scm (perl-datetime-timezone): Update to 2.13.
[propagated-inputs]: Remove perl-params-validate. Add perl-namespace-autoclean,
perl-params-validationcompiler.
2017-07-30 20:10:43 -04:00
Leo Famulari 8ec0877a6b
gnu: perl-datetime-locale: Update to 1.16.
* gnu/packages/perl.scm (perl-datetime-locale): Update to 1.16.
[native-inputs]: Add perl-file-sharedir-install, perl-file-sharedir,
perl-test-file-sharedir-dist, perl-test-warnings, perl-test-requires,
perl-namespace-autoclean, perl-cpan-meta-check.
[propagated-inputs]: Add perl-params-validationcompiler. Remove
perl-params-validate.
2017-07-30 20:10:43 -04:00
Leo Famulari e780fde515
gnu: perl-datetime-format-strptime: Update to 1.73.
* gnu/packages/perl.scm (perl-datetime-format-strptime): Update to 1.73.
[propagated-inputs]: Add perl-package-deprecationmanager, perl-params-validate,
perl-sub-name, perl-test-warnings.
2017-07-30 20:10:43 -04:00
Leo Famulari 09d94b2bab
gnu: perl-datetime-format-natural: Update to 1.05.
* gnu/packages/perl.scm (perl-datetime-format-natural: Update to 1.05.
2017-07-30 20:10:42 -04:00
Leo Famulari 9e5df71e7d
gnu: perl-datetime-format-flexible: Update to 0.28.
* gnu/packages/perl.scm (perl-datetime-format-flexible): Update to 0.28.
2017-07-30 20:10:42 -04:00
Leo Famulari dc8e21110a
gnu: perl-datetime-event-recurrence: Update to 0.19.
* gnu/packages/perl.scm (perl-datetime-event-recurrence): Update to 0.19.
2017-07-30 20:10:42 -04:00
Leo Famulari ff3034de5d
gnu: perl-datetime-event-local: Update to 0.13.
* gnu/packages/perl.scm (perl-datetime-event-local): Update to 0.13.
2017-07-30 20:10:42 -04:00
Leo Famulari d388e4e292
gnu: perl-datetime-set: Update to 0.3900.
* gnu/packages/perl.scm (perl-datetime-set): Update to 0.3900.
2017-07-30 20:10:41 -04:00
Leo Famulari 3404803057
gnu: perl-datetime: Update to 1.43.
* gnu/packages/perl.scm (perl-datetime): Update to 1.43.
[native-inputs]: Add perl-cpan-meta-check.
[propagated-inputs]: Add perl-file-sharedir.
2017-07-30 20:10:41 -04:00
Leo Famulari 7ab1833598
gnu: perl-file-sharedir-install: Update to 0.11.
* gnu/packages/perl.scm (perl-file-sharedir-install): Update to 0.11.
[native-inputs]: Add perl-module-build.
2017-07-30 20:10:41 -04:00
Leo Famulari 1c0c608566
gnu: perl-file-sharedir: Update to 1.104.
* gnu/packages/perl.scm (perl-file-sharedir): Update to 1.104.
2017-07-30 20:10:41 -04:00
Leo Famulari ed9543c0ed
gnu: perl-cpan-meta-check: Update to 0.014.
* gnu/packages/perl.scm (perl-cpan-meta-check): Update to 0.014.
2017-07-30 20:10:41 -04:00
Leo Famulari ccb38cdc8d
gnu: Add perl-params-validationcompiler.
* gnu/packages/perl.scm (perl-params-validationcompiler): New variable.
2017-07-30 20:10:40 -04:00
Leo Famulari 00ace88396
gnu: Add perl-test-file-sharedir-dist.
* gnu/packages/perl.scm (perl-test-file-sharedir-dist): New variable.
2017-07-30 20:10:40 -04:00
Leo Famulari a4d6a95793
gnu: Add perl-test2-plugin-nowarnings.
* gnu/packages/perl.scm (perl-test2-plugin-nowarnings): New variable.
2017-07-30 20:10:40 -04:00
Leo Famulari 9ad78b2c21
gnu: Add perl-test2-bundle-extended.
* gnu/packages/perl.scm (perl-test2-bundle-extended): New variable.
2017-07-30 20:10:40 -04:00
Leo Famulari 721fd17797
gnu: Add perl-sub-info.
* gnu/packages/perl.scm (perl-sub-info): New variable.
2017-07-30 20:10:40 -04:00
Leo Famulari 6d6646f932
gnu: Add perl-term-table.
* gnu/packages/perl.scm (perl-term-table): New variable.
2017-07-30 20:10:39 -04:00
Leo Famulari b51f02a949
gnu: Add perl-specio.
* gnu/packages/perl.scm (perl-specio): New variable.
2017-07-30 20:10:39 -04:00
Leo Famulari df4fc5217f
gnu: Add perl-importer.
* gnu/packages/perl.scm (perl-importer): New variable.
2017-07-30 20:10:39 -04:00
Leo Famulari 13d73c42f9
gnu: Add perl-file-sharedir-dist.
* gnu/packages/perl.scm (perl-file-sharedir-dist): New variable.
2017-07-30 20:10:35 -04:00
Ludovic Courtès 706448b193
gnu: automake: Add 1.15.1.
* gnu/packages/autotools.scm (automake/latest): New variable.
2017-07-30 22:31:10 +02:00
Ludovic Courtès c91171627b
gnu: guix: Search .go files of dependencies in lib/guile/.
* gnu/packages/package-management.scm (guix)[arguments]: Add (srfi
srfi-26) to #:modules.  Introduce 'gopath', distinct from 'path'.
2017-07-30 21:36:18 +02:00
Ludovic Courtès 1c0ee79d4d
gnu: guix: Update snapshot.
* gnu/packages/package-management.scm (guix): Update to 228a398.
2017-07-30 17:58:04 +02:00
Ludovic Courtès 1398a43816
services: openssh: Extensions provide extra authorized keys.
* gnu/services/ssh.scm (extend-openssh-authorized-keys): New procedure.
(openssh-service-type)[compose, extend]: New fields.
* doc/guix.texi (Networking Services): Document the extension.
2017-07-30 16:23:19 +02:00
Ludovic Courtès 4892eb7c6a
services: openssh: Add 'authorized-keys' field.
* gnu/services/ssh.scm (<openssh-configuration>)[authorized-keys]: New
field.
(authorized-key-directory): New procedure.
(openssh-config-file): Honor 'authorized-keys'.
(openssh-activation): Use 'with-imported-modules'.  Make /etc/ssh
755.  Create /etc/ssh/authorized_keys.d.
* doc/guix.texi (Networking Services): Document it.
2017-07-30 16:23:19 +02:00
Ludovic Courtès 75bddb13eb
services: cuirass: Set 'GIT_SSL_CAINFO' and 'GIT_EXEC_PATH'.
Reported by Ricardo Wurmus.

* gnu/services/cuirass.scm (cuirass-shepherd-service): Pass
 #:environment-variables.
2017-07-30 16:23:19 +02:00
Marius Bakke 9dab50179a
gnu: perl: Add missing dependencies on Module::Install.
Perl 5.26 and later does not provide this module.

* gnu/packages/databases.scm (perl-sql-abstract)[native-inputs]: Add PERL-MODULE-INSTALL.
* gnu/packages/perl.scm (perl-moosex-emulate-class-accessor-fast,
perl-file-zglob, perl-object-signature, perl-test-utf8, perl-time-duration,
perl-benchmark-timer, perl-class-accessor-grouped,
perl-class-c3-componentised, perl-term-encoding)[native-inputs]: Likewise.
* gnu/packages/web.scm (perl-http-parser-xs, perl-uri-template,
perl-www-curl)[native-inputs]: Likewise.
* gnu/packages/xml.scm (perl-xml-atom)[native-inputs]: Likewise.
2017-07-30 14:55:27 +02:00
Marius Bakke c918773a03
gnu: ffmpeg: Update to 3.3.3.
* gnu/packages/video.scm (ffmpeg): Update to 3.3.3.
2017-07-30 12:49:38 +02:00
Christopher Baines fa65e84aab
gnu: qemu: Build with support for Linux AIO
Add libaio as an input, such that QEMU is built with support for Asynchronous
I/O (AIO).

* gnu/packages/virtualization.scm (qemu)[inputs]: Uncomment libaio.
2017-07-30 09:56:00 +01:00
Christopher Baines 119fdd0d0e
services: Add memcached.
* gnu/services/databases.scm (memcached-service-type, %memcached-accounts):
  New variables.
  (<memcached-configuration>): New record type.
  (memcached-service-type): New procedures.
* gnu/tests/databases.scm: New file.
* doc/guix.texi (Database Services): Document the new memcached service.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add entry for tests/databases.scm.
2017-07-30 09:08:30 +01:00
Christopher Baines 686144e986
gnu: Add memcached.
* gnu/packages/databases.scm (memcached): New variable.
2017-07-30 09:06:52 +01:00
宋文武 c00c90ca37
gnu: retroarch: Update to 1.6.3.
* gnu/packages/games.scm (retroarch): Update to 1.6.3.
2017-07-30 15:15:34 +08:00
Theodoros Foradis 85cdab64c6
gnu: yosys: Add dependency on z3.
* gnu/packages/fpga.scm (yosys): Add z3 to propagated-inputs.
2017-07-29 23:03:47 +02:00
Theodoros Foradis 313844d9dc
gnu: Add z3.
* gnu/packages/maths.scm (z3): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-29 23:03:47 +02:00
Peter Mikkelsen a4078acf4a
gnu: erlang: Fix man-pages search path of 'erl -man'.
* gnu/packages/patches/erlang-man-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/erlang.scm (erlang)[source]: Use it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-29 23:03:47 +02:00
Oleg Pykhalov 53ac6977ac
gnu: tome4: Clean up snippet.
* gnu/packages/games.scm (tome4)[source](snippet): Use a single
'substitute*' call instead of 'for-each'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-29 23:03:47 +02:00
Marius Bakke baa6b77789
gnu: vim: Update to 8.0.0808.
* gnu/packages/vim.scm (vim): Update to 8.0.0808.
[arguments]: Remove obsolete 'make-bit-reproducable' phase.
(vim-full): Update to 8.0.0808.
[arguments]: Remove 'drop-failing-tests' phase.
2017-07-29 23:01:17 +02:00
Kyle Meyer 24b115dff5
gnu: emacs: Check GUIX_ENVIRONMENT when autoloading packages.
Check the environment profile so that we autoload packages that are given as
arguments to "guix environment" but are not in the system or user profile.
Note that the union of Emacs packages in the system, user, and environment
profiles will be autoloaded even when --pure was passed to "guix environment",
because it's not clear how to detect that --pure was given.

* gnu/packages/aux-files/emacs/guix-emacs.el (guix-emacs-autoload-packages):
Add Emacs packages from GUIX_ENVIRONMENT profile.

Signed-off-by: Alex Kost <alezost@gmail.com>
2017-07-29 23:19:17 +03:00
Kyle Meyer d0a5205292
gnu: Remove emacs-seq.
The seq.el library has been included with Emacs since version 25.1.

* gnu/packages/emacs.scm (emacs-seq): Remove variable.
(flycheck, emacs-cider)[propagated-inputs]: Remove emacs-seq.

Signed-off-by: Alex Kost <alezost@gmail.com>
2017-07-29 23:19:17 +03:00
Kyle Meyer 469c7ce058
gnu: Remove let-alist.
The let-alist package has been included with Emacs since version 25.1.

* gnu/packages/emacs.scm (let-alist): Remove variable.
(flycheck, emacs-pdf-tools, emacs-sx)[propagated-inputs]: Remove let-alist.

Signed-off-by: Alex Kost <alezost@gmail.com>
2017-07-29 23:19:16 +03:00
Alex Kost b1a6a70684
gnu: emacs-ess: Install elisp files in "guix.d".
Fixes <http://bugs.gnu.org/27686>.
Reported by Adonay Felipe Nogueira <adfeno@openmailbox.org>.

* gnu/packages/emacs.scm (emacs-ess)[arguments]: Add LISPDIR to
'make-flags' to install *.el files into "guix.d" sub-directory.
2017-07-29 23:18:56 +03:00
Danny Milosavljevic 444f9dccc2
gnu: grub-efi: Add mtools input.
* gnu/packages/bootloaders.scm: Add (gnu packages mtools).
(grub-efi)[inputs]: Add mtools.
[arguments]: Add phase "use-absolute-mtools-path".
2017-07-29 19:24:04 +02:00
Julien Lepiller 303690c405
gnu: Add coq-interval.
* gnu/packages/ocaml.scm (coq-interval): New variable.
2017-07-29 15:19:07 +02:00
Julien Lepiller b09c4244f7
gnu: Add coq-coquelicot.
* gnu/packages/ocaml.scm (coq-coquelicot): New variable.
2017-07-29 15:19:03 +02:00
Julien Lepiller 380c65de94
gnu: Add coq-mathcomp.
* gnu/packages/ocaml.scm (coq-mathcomp): New variable.
2017-07-29 15:18:59 +02:00
Julien Lepiller 88191acee2
gnu: Add coq-gappa.
* gnu/packages/ocaml.scm (coq-gappa): New variable.
2017-07-29 15:18:54 +02:00
Julien Lepiller d163d97d92
gnu: Add coq-flocq.
* gnu/packages/ocaml.scm (coq-flocq): New variable.
2017-07-29 15:18:45 +02:00
Marius Bakke 8f82110492
gnu: gnupg: Update to 2.1.22.
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.22.
2017-07-29 14:47:24 +02:00
Ben Woodcroft a9085f0c5c
gnu: metabat: Update to 2.11.2.
* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.2.
2017-07-29 22:37:47 +10:00
Jan Nieuwenhuizen 0e016722ee
gnu: mes: Update to 0.9.
* gnu/packages/mes.scm (mes): Update to 0.9.
[arguments]: Delete `strip' phase.
[synopsis]: Rewrite to be more descriptive.
[description]: Include expanded acronym.
2017-07-29 14:33:19 +02:00
Tobias Geerinckx-Rice 9f9b7a0d01
gnu: gptfdisk: Update to 1.0.3.
* gnu/packages/disk.scm (gptfdisk): Update to 1.0.3.
2017-07-29 14:15:48 +02:00
Christopher Baines 730ed6ec8b
gnu: services: admin: Add tailon.
* gnu/services/admin.scm
  (<tailon-configuration>, <tailon-configuration-file>): New record types.
  (tailon-configuration-files-string, tailon-shepherd-service): New
  procedures.
  (%tailon-accounts, tailon-service-type: New variables.
* doc/guix.texi (Monitoring Services: Document the Tailon service.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/tests/admin.scm.
* gnu/tests/admin.scm: New file.
2017-07-29 12:45:03 +01:00
Arun Isaac b5244fcb49
gnu: arandr: Remove make-xrandr-available phase.
wrap-program functionality is already provided by python-build-system.

* gnu/packages/xdisorg.scm (arandr): Remove make-xrandr-available phase.
2017-07-29 16:47:37 +05:30
Oleg Pykhalov e8d9a87862
gnu: Add emacs-rpm-spec-mode.
* gnu/packages/emacs.scm (emacs-rpm-spec-mode): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-07-29 16:41:34 +05:30
Jan Nieuwenhuizen 3b56776fb8
gnu: mescc-tools: Update to 0.2.
* gnu/packages/mes.scm (mescc-tools): Update to 0.2.
2017-07-29 11:37:04 +02:00
Mark H Weaver 38ba8a6116
gnu: linux-libre: Update to 4.12.4.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.4.
(%linux-libre-hash): Update hash.
2017-07-28 21:08:51 -04:00
Mark H Weaver dfa0c66cc9
gnu: linux-libre@4.9: Update to 4.9.40.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.40.
2017-07-28 21:08:19 -04:00
Mark H Weaver 6b96478c6d
gnu: linux-libre@4.4: Update to 4.4.79.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.79.
2017-07-28 21:07:31 -04:00
Tobias Geerinckx-Rice 4f9dd97e65
gnu: sssd: Update to 1.15.3.
* gnu/packages/sssd.scm (sssd): Update to 1.15.3.
[native-inputs]: Add util-linux.
2017-07-29 01:08:17 +02:00
Tobias Geerinckx-Rice d02e19aa2c
gnu: bind: Update to 9.11.2.
* gnu/packages/dns.scm (isc-bind): Update to 9.11.2.
2017-07-29 00:32:00 +02:00
Oleg Pykhalov 32c4a5060e
gnu: emacs-auctex: Update to 11.91.0.
* gnu/packages/emacs.scm (emacs-auctex): Update to 11.91.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-28 23:30:41 +02:00
Oleg Pykhalov 1f88f189eb
gnu: Add tome4.
* gnu/packages/games.scm (tome4): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-28 23:30:41 +02:00
Danny Milosavljevic 1975c754f4
bootloader: Use <menu-entry> for the bootloader side.
* gnu/bootloader.scm (menu-entry-device-mount-point): New variable.  Export it.
(<menu-entry>: New field "device".
* gnu/bootloader/grub.scm (grub-confgiuration-file): Handle <menu-entry>
entries.
* gnu/bootloader/extlinux.scm (extlinux-configuration-file): Handle
<menu-entry> entries.
* gnu/system.scm (menu->entry->boot-parameters): Delete variable.
(boot-parameters->menu-entry): New variable.  Export it.
(operating-system-bootcfg): Make OLD-ENTRIES a list of <menu-entry>.
* guix/script/system.scm (reinstall-bootloader): Fix bootcfg usage.
(perform-action): Fix bootcfg usage.
2017-07-28 21:56:18 +02:00
Ludovic Courtès 9ca8aa38ec
gnu: guix: Add dependency on Guile-Git.
* gnu/packages/package-management.scm (guix)[arguments] <wrap-program>:
Add Guile-Git to PATH.
[propagated-inputs]: Add GUILE-GIT.
(guile2.0-guix)[propagated-inputs]: Add GUILE2.0-GIT.
2017-07-28 18:09:44 +02:00
Ludovic Courtès 3a53759807
gnu: guile-git: Update snapshot.
* gnu/packages/guile.scm (guile-git): Update to commit e156a10.
[native-inputs]: Add TEXINFO.
2017-07-28 18:09:43 +02:00
Ludovic Courtès 6f0f55148d
gnu: le-certs: Create OpenSSL hash symlinks.
* gnu/packages/certs.scm (le-certs)[arguments]: Run 'c_rehash' on the
result.
[native-inputs]: New fields.
2017-07-28 18:09:43 +02:00
Tobias Geerinckx-Rice c4b006ba12
gnu: btrfs-progs: Update to 4.12.
* gnu/packages/linux.scm (btrfs-progs): Update to 4.12.
[outputs]: Remove inaccurate comment on size.
2017-07-28 16:32:04 +02:00
Ben Woodcroft f112bd26ae
gnu: redis: Update to 4.0.1.
* gnu/packages/databases.scm (redis): Update to 4.0.1.
2017-07-28 21:10:49 +10:00
Ben Woodcroft ac01cb0790
gnu: ruby-json-pure: Update to 2.1.0.
* gnu/packages/ruby.scm (ruby-json-pure): Update to 2.1.0.
[arguments]: Replace 'replace-git-ls-files' phase with 'fix-rakefile'
and 'regenerate-gemspec' phases.
[inputs]: Remove ruby-permutation, ruby-utils, ragel. Add ruby-test-unit,
ruby-simplecov.
2017-07-28 20:18:53 +10:00
Ben Woodcroft 9c14bc7a4d
gnu: bundler: Update to 1.15.3.
* gnu/packages/ruby.scm (bundler): Update to 1.15.3.
2017-07-28 20:18:53 +10:00
Ben Woodcroft a2a558147a
gnu: ruby-ffi: Update to 1.9.18.
* gnu/packages/ruby.scm (ruby-ffi): Update to 1.9.18.
2017-07-28 20:18:52 +10:00
Ben Woodcroft 00eeb45fca
gnu: redis: Update to 4.0.0.
* gnu/packages/databases.scm (redis): Update to 4.0.0.
2017-07-28 20:18:52 +10:00
Ben Woodcroft efb94fda64
gnu: ruby-nokogiri: Update to 1.8.0.
* gnu/packages/ruby.scm (ruby-nokogiri): Update to 1.8.0.
2017-07-28 20:18:52 +10:00
Ben Woodcroft 26f4a37736
gnu: ruby-mini-portile2: Update to 2.2.0.
* gnu/packages/ruby.scm (ruby-mini-portile2): Update to 2.2.0.
2017-07-28 20:18:51 +10:00
Marius Bakke 4685866a94
gnu: perl-xs-object-magic: Fix build with perl@5.26.
* gnu/packages/perl.scm (perl-xs-object-magic)[native-inputs]: Add
PERL-MODULE-INSTALL.
2017-07-28 01:31:15 +02:00
Marius Bakke 5890b40bd0
gnu: perl-mousex-nativetraits: Fix build with perl@5.26.
* gnu/packages/perl.scm (perl-mousex-nativetraits)[native-inputs]: Add
PERL-MODULE-INSTALL.
2017-07-28 01:31:15 +02:00
Marius Bakke ec5c986e33
gnu: perl-anyevent-i3: Update to 0.17.
* gnu/packages/wm.scm (perl-anyevent-i3): Update to 0.17.
2017-07-28 01:31:15 +02:00
Tobias Geerinckx-Rice 0f6cf5a61c
gnu: nautilus: Update to 3.24.2.1.
* gnu/packages/gnome.scm (nautilus): Update to 3.24.2.1.
2017-07-28 01:02:40 +02:00
Tobias Geerinckx-Rice 73fe4552aa
gnu: gptfdisk: Update description.
* gnu/packages/disk.scm (gptfdisk): Remove outdated statement and use @dfn.
2017-07-28 01:02:39 +02:00
Tobias Geerinckx-Rice 0193e3be53
gnu: goffice: Update to 3.24.2.1.
* gnu/packages/gnome.scm (goffice): Update to 3.24.2.1.
2017-07-28 01:02:39 +02:00
Tobias Geerinckx-Rice c8fc9a379b
gnu: shotwell: Update to 0.26.2.
* gnu/packages/gnome.scm (shotwell): Update to 0.26.2.
2017-07-28 01:02:39 +02:00
Marius Bakke e0b9e377f1
Merge branch 'master' into core-updates 2017-07-28 00:34:13 +02:00
Marius Bakke fb2715720a
gnu: whois: Update to 5.2.17.
* gnu/packages/networking.scm (whois): Update to 5.2.17.
2017-07-28 00:07:45 +02:00
Marius Bakke bd51224936
gnu: nss, nss-certs: Update to 3.32.
This release includes minor code changes and many certificate updates:
<https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS/NSS_3.32_release_notes>

* gnu/packages/certs.scm (nss-certs): Update to 3.32.
* gnu/packages/gnuzilla.scm (nss): Update to 3.32.
[arguments]: Prevent another test file from being installed.
* gnu/packages/patches/nss-pkgconfig.patch: Adjust.
2017-07-28 00:07:28 +02:00
Leo Famulari 201c0e7276
gnu: perl-gd-securityimage: Fix build with Perl 5.26.0.
* gnu/packages/gd.scm (perl-gd-securityimage)[arguments]: Set
PERL_USE_UNSAFE_INC in new 'set-env' phase.
2017-07-27 16:22:18 -04:00
Leo Famulari 70629b6d9a
gnu: perl-feed-find: Fix build with Perl 5.26.0.
* gnu/packages/web.scm (perl-feed-find)[arguments]: Set PERL_USE_UNSAFE_INC in
new 'set-env' phase.
2017-07-27 16:22:17 -04:00
Marius Bakke 6571754462
gnu: nspr: Update to 4.16.
* gnu/packages/gnuzilla.scm (nspr): Update to 4.16.
2017-07-27 22:15:27 +02:00
Marius Bakke 90335ccea6
gnu: python-cryptography: Update to 2.0.2.
* gnu/packages/python.scm (python-cryptography-vectors, python-cryptography):
Update to 2.0.2.
2017-07-27 22:15:26 +02:00
Leo Famulari f27954a077
gnu: perl-encode-hanextra: Fix build with Perl 5.26.0.
* gnu/packages/perl.scm (perl-encode-hanextra)[arguments]: Set
PERL_USE_UNSAFE_INC in new 'set-env' phase.
2017-07-27 16:14:54 -04:00
Leo Famulari b2973d9634
gnu: subversion: Update to 1.8.18.
* gnu/packages/version-control.scm (subversion): Update to 1.8.18.
2017-07-27 14:33:32 -04:00
Leo Famulari 6d31c175b2
gnu: net-tools: Update to 1.60-0.479bb4a7.
This leaves net-tools-for-tests unchanged.

Fixes <https://bugs.gnu.org/27811>.

* gnu/packages/linux.scm (net-tools): Update to 1.60-0.479bb4a7.
[source]: Use git-fetch.
[inputs]: Remove the Debian patch.
[arguments]: Use modify-phases. Remove the 'patch' phase. Disable
SELINUX and AFBLUETOOTH from build configuration.
2017-07-27 13:39:42 -04:00
Ludovic Courtès 412701b0e5
services: guix-publish: Run in a UTF-8 locale.
Works around <https://bugs.gnu.org/26948>.

* gnu/services/base.scm (guix-publish-shepherd-service): Pass
  #:environment-variables to 'make-forkexec-constructor'.
2017-07-27 14:51:03 +02:00
Ludovic Courtès 138fe41198
system: Add 'grep --color' alias in '.bash_profile' skeleton.
* gnu/system/shadow.scm (default-skeletons)[profile]: Add 'grep' alias.
2017-07-27 14:44:28 +02:00
Julian Graham a812aff99c
gnu: gzochi: Update to 0.11.1.
* gnu/packages/game-development.scm (gzochi): Update to 0.11.1.
  (gzochi)[arguments]: Remove patch for `-Werror', which is no longer
  necessary.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-27 11:47:51 +02:00
Ludovic Courtès f1be6f5b5a
gnu: openmpi: Add "static" output.
* gnu/packages/mpi.scm (openmpi)[outputs]: New field.
[arguments]: Add 'move-static-libraries' phase.
2017-07-27 11:47:50 +02:00
Ricardo Wurmus dd54d3d5da
gnu: po4a: Work around "dotless @INC" build issues.
* gnu/packages/gettext.scm (po4a)[arguments]: Add build phase
"set-search-path".
2017-07-27 10:20:23 +02:00
Ricardo Wurmus 8f2c410fc5
gnu: r-preprocesscore: Update to 1.38.1.
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.38.1.
2017-07-27 10:04:09 +02:00
Ricardo Wurmus 620b0468e9
gnu: Add cowsay.
* gnu/packages/games.scm (cowsay): New variable.
2017-07-27 10:03:37 +02:00
Tobias Geerinckx-Rice 56ab0f0c6d
gnu: nnn: Update to 1.3.
* gnu/packages/admin.scm (nnn): Update to 1.3.
2017-07-27 05:03:33 +02:00
Dave Love efcacc17c7
gnu: openmpi: Enable SGE support.
* gnu/packages/mpi.scm (openmpi)[arguments]: Pass "--with-sge" in
 #:configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-26 23:13:52 +02:00
ng0 217ce5702c
gnu: mg: Add new phase to find 'diff'.
* gnu/packages/text-editors.scm (mg)[phases]: Add new 'correct-location-of-difftool'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-26 23:13:52 +02:00
ng0 bcd1544dd2
gnu: mg: Fetch source via HTTPS.
* gnu/packages/text-editors.scm (mg)[source]: Use HTTPS.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-26 23:13:52 +02:00
ng0 1a5a8afea0
gnu: mg: Update to 20170401.
* gnu/packages/text-editors.scm (mg): Update to 20170401.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-26 23:13:52 +02:00
Danny Milosavljevic 9ea61b1c6f
gnu: Add python-flask-principal.
* gnu/packages/python.scm (python-flask-principal, python2-flask-principal):
New variables.
2017-07-26 21:52:30 +02:00
Tobias Geerinckx-Rice 9d9fc39946
gnu: Add lziprecover.
* gnu/packages/compression.scm (lziprecover): New variable.
2017-07-26 19:38:59 +02:00
Leo Famulari f96dbf6b70
gnu: net-tools: Add a test-only variant and use it for GnuTLS.
* gnu/packages/linux.scm (net-tools-for-tests): Add hidden net-tools variant.
* gnu/packages/tls.scm (gnutls)[native-inputs]: Use net-tools-for-tests instead
of net-tools.
2017-07-26 12:06:52 -04:00
Ricardo Wurmus d39238cf3d
gnu: synfig: Fix boost build error.
* gnu/packages/animation.scm (synfig)[arguments]: Add phase
"fix-boost-build-error".
2017-07-26 12:27:12 +02:00
Ludovic Courtès bcd757fdb4
gnu: mg: Move to (gnu packages text-editors).
* gnu/packages/mg.scm: Remove.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove it.
* gnu/packages/text-editors.scm (mg): New variable.
2017-07-26 11:11:11 +02:00
Andy Wingo a5130d10fa
gnu: Add fcgiwrap service.
* doc/guix.texi (Web Services): Add documentation.
* gnu/services/web.scm (<fcgiwrap-configuration>): New record type.
(fcgiwrap-accounts, fcgiwrap-shepherd-service): New service extensions.
(fcgiwrap-service-type): New service type.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-26 11:00:04 +02:00
Efraim Flashner 1cae188e61
gnu: glpk: Update to 4.63.
* gnu/packages/maths.scm (glpk): Update to 4.63.
2017-07-26 10:15:54 +03:00
Efraim Flashner 360f692783
gnu: perl-anyevent: Update to 7.14.
* gnu/packages/libevent.scm (perl-anyevent): Update to 7.14.
2017-07-26 09:31:30 +03:00
Danny Milosavljevic 4f038621a5
gnu: leafpad: Use glib-or-gtk build-system.
* gnu/packages/text-editors.scm (leafpad): Use glib-or-gtk build-system.
2017-07-26 08:19:47 +02:00
Danny Milosavljevic ff4192ff57
gnu: claws-mail: Disable (duplicate) Gtk+ icon cache generation.
* gnu/packages/mail.scm (claws-mail)[arguments]: Add make-flags to disable
Gtk+ icon cache generation.
2017-07-26 08:18:46 +02:00
Kei Kebreau 8ad40a69d1
gnu: evince: Update to 3.24.1.
* gnu/packages/gnome.scm (evince): Update to 3.24.1.
[source]: Remove obsolete patch.
* gnu/packages/patches/evince-CVE-2017-1000083.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-07-25 18:41:05 -04:00
Tobias Geerinckx-Rice 980fe414c1
gnu: hplip: Update to 3.17.7.
* gnu/packages/cups.scm (hplip): Update to 3.17.7.
2017-07-25 23:59:21 +02:00
Tobias Geerinckx-Rice ae03ee4274
gnu: fdisk: Update to 2.0.0a1.
* gnu/packages/disk.scm (fdisk): Update to 2.0.0a1.
[arguments]: Make sure the build finds its own headers.
2017-07-25 23:58:34 +02:00
Tobias Geerinckx-Rice aa588d8a38
gnu: sdparm: Update to 1.10.
* gnu/packages/disk.scm (sdparm): Update to 1.10.
2017-07-25 23:58:34 +02:00
Oleg Pykhalov af79852c99
gnu: neofetch: Fix search path.
* gnu/packages/admin.scm (neofetch): Fix "No such file or directory" for distro logo.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-07-25 23:07:37 +02:00
Marius Bakke 16fb1e79ca
gnu: chess: Update to 6.2.5.
* gnu/packages/games.scm (chess): Update to 6.2.5.
2017-07-25 23:07:37 +02:00
Marius Bakke 4eacb47de0
gnu: feh: Update to 2.19.1.
* gnu/packages/image-viewers.scm (feh): Update to 2.19.1.
2017-07-25 22:58:43 +02:00
Marius Bakke 5f02ea1a6d
gnu: notmuch: Update to 0.25.
* gnu/packages/mail.scm (notmuch): Update to 0.25.
2017-07-25 22:58:43 +02:00
Kei Kebreau 4fdab17371
gnu: python2-urwid: Actually build urwid for Python 2.
* gnu/packages/python.scm (python2-urwid)[arguments]: Add #:python.
2017-07-25 15:29:29 -04:00
Leo Famulari e9f468dfcd
gnu: tcpdump: Update to 4.9.1 [fixes CVE-2017-11108].
* gnu/packages/admin.scm (tcpdump): Update to 4.9.1.
2017-07-25 15:25:44 -04:00
Feng Shu 90062885b7
gnu: you-get: Update to 0.4.803.
* gnu/packages/video.scm (you-get): Update to 0.4.803.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-25 14:44:19 -04:00
Kei Kebreau c7db7b86ce
gnu: perl-dbd-mysql: Fix CVE-2017-10788.
* gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/databases.scm (perl-dbd-mysql)[source]: Use it.
2017-07-25 14:11:20 -04:00
Dave Love bb0f6d7526
gnu: openmpi: Description mentions MPI 3.0.
* gnu/packages/mpi.scm (openmpi): It's MPI 3, not MPI 2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-25 18:10:08 +02:00
Dave Love 1f9bff4152
gnu: openmpi: Update to 1.10.7.
* gnu/packages/mpi.scm (openmpi): Update to 1.10.7.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-25 18:09:27 +02:00
Ludovic Courtès 70bc608503
gnu: Add guile2.0-git.
* gnu/packages/guile.scm (guile2.0-git): New variable.
2017-07-25 17:46:17 +02:00
Ludovic Courtès 726ecfeb3a
gnu: Add guile2.0-bytestructures.
* gnu/packages/patches/guile-bytestructures-name-clash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/guile.scm (guile-bytestructures)[source]: Use it.
[arguments]: Unpack the source.
[native-inputs]: New field.
(guile2.0-bytestructures): New variable.
2017-07-25 17:46:17 +02:00
Kei Kebreau 0093b1262b
gnu: maxima: Ensure binutils are available at runtime.
* gnu/packages/maths.scm (maxima)[arguments]: Use modify-phases syntax.
Modify 'post-install' phase.
2017-07-25 07:58:55 -04:00
Kei Kebreau 6b2eafaaa8
Revert "gnu: maxima: Ensure gcc is available at runtime."
This reverts commit f2fa86cc82.
Commit 5ea8dbf0c9 fixes the underlying
issue in GNU Common Lisp.
2017-07-25 07:58:46 -04:00
Kei Kebreau 5ea8dbf0c9
gnu: gcl: Ensure gcc and binutils are available at runtime.
* gnu/packages/lisp.scm (gcl)[arguments]: Add -fgnu89-inline to CFLAGS.
Add GCC path to make-flags. Modify 'pre-conf' phase. Add 'wrap' phase.
2017-07-25 07:58:06 -04:00
Mark H Weaver ebc9f7050c
gnu: webkitgtk: Update to 2.16.6 [security fixes].
Includes fixes for CVE-2017-7039, CVE-2017-7018, CVE-2017-7030, CVE-2017-7037,
CVE-2017-7034, CVE-2017-7055, CVE-2017-7056, CVE-2017-7064, CVE-2017-7061,
CVE-2017-7048, and CVE-2017-7046.

* gnu/packages/webkit.scm (webkitgtk): Update to 2.16.6.
2017-07-25 07:32:25 -04:00
Ludovic Courtès a84ea2191e
system: Add a default '.guile' skeleton.
* gnu/system/shadow.scm (default-skeletons): Add ".guile".
2017-07-25 12:23:26 +02:00
Leo Famulari 5b4a6ba044
gnu: xterm: Update to 330.
* gnu/packages/xorg.scm (xterm): Update to 330.
2017-07-24 22:54:18 -04:00
Leo Famulari 0e8fed86d8
gnu: dialog: Update to 1.3-20170509.
* gnu/packages/ncurses.scm (dialog): Update to 1.3-20170509.
2017-07-24 22:54:15 -04:00
Leo Famulari fce8285e4b
gnu: opus: Update to 1.2.1.
* gnu/packages/xiph.scm (opus): Update to 1.2.1.
[source]: Use new source URL.
2017-07-24 17:37:05 -04:00
Efraim Flashner f6062e5432
gnu: perl-data-dumper-concise: Update to 2.023.
* gnu/packages/perl.scm (perl-data-dumper-concise): Update to 2.023.
[source]: Update source uri.
2017-07-24 22:35:11 +03:00
Efraim Flashner 1627ca0494
gnu: perl-context-preserve: Update to 0.02.
* gnu/packages/perl.scm (perl-context-preserve): Update to 0.02.
2017-07-24 22:35:09 +03:00
Christopher Baines d61a894bfa
gnu: gnome: Add deja-dup.
* gnu/packages/gnome.scm (deja-dup): New variable.
* gnu/packages/patches/deja-dup-use-ref-keyword-for-iter.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch file entry.
2017-07-24 20:05:49 +01:00
Ludovic Courtès dc4f697f01
gnu: python-pexpect: Add dependency on the full Bash.
Fixes a regression introduced in
704243e0c6.

* gnu/packages/python.scm (python-pexpect)[native-inputs]: Add BASH.
2017-07-24 17:24:17 +02:00
Ludovic Courtès 3e6add96c5
gnu: gnome-mime-data: Do not use the bundled intltool.
* gnu/packages/gnome.scm (gnome-mime-data)[arguments]: New field.
2017-07-24 17:11:30 +02:00
Ludovic Courtès 23212bf9e6
gnu: perl: Work around "dotless @INC" build issues.
* gnu/packages/perl.scm (perl-task-weaken)[arguments]: New field.
(perl-unicode-normalize): Likewise.
* gnu/packages/web.scm (perl-http-server-simple)[arguments]: Add #:phases.
2017-07-24 16:36:13 +02:00
Ludovic Courtès e2f24597a9
gnu: perl-regexp-common: Update to 2017060201.
* gnu/packages/perl.scm (perl-regexp-common): Update to 2017060201.
2017-07-24 16:33:54 +02:00
Ludovic Courtès c022e11187
gnu: guix: Update snapshot.
* gnu/packages/package-management.scm (guix): Update to f1ddfe4.
2017-07-24 12:25:08 +02:00
Ludovic Courtès f1ddfe4f14
gnu: python-flaky: Fix Texinfo markup in description.
* gnu/packages/python.scm (python-flaky)[description]: Escape "@".
2017-07-24 12:05:53 +02:00
Leo Famulari e081e2dd0b
Merge branch 'master' into core-updates 2017-07-23 19:06:49 -04:00
Leo Famulari 2472f7a8f1
gnu: isc-dhcp: Update bundled bind to 9.9.10-P3.
This fixes a regression introduced in the fix for CVE-2017-3142, in BIND
9.9.10-P2, commit ecb232bdfc.

See 'CHANGELOG' in the source distribution for more information.

* gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.10-P3.
2017-07-23 19:05:37 -04:00
Leo Famulari 5391c6c9d2
gnu: bind: Update to 9.11.1-P3.
This fixes a regression introduced in the fix for CVE-2017-3142, in BIND
9.11.1-P2, commit faa1369e3c.

See 'CHANGELOG' in the source distribution for more information.

* gnu/packages/dns.scm (isc-bind): Update to 9.11.1-P3.
2017-07-23 19:05:37 -04:00
Mark H Weaver c67d80563f
gnu: ncurses/gpm: Move to (gnu packages ncurses).
This is needed to avoid compilation problems caused by the cyclic dependency
between (gnu packages ncurses) and (gnu packages linux).

* gnu/packages/linux.scm (ncurses/gpm): Move to ...
* gnu/packages/ncurses.scm (ncurses/gpm): ... here.  Fix misleading
indentation.  Add (gnu packages linux) to the module imports.
2017-07-23 17:04:51 -04:00
Efraim Flashner fd900d68a5
gnu: Add support for aarch64's compiled kernel.
* gnu/packages/linux.scm (linux-libre)[arguments]: Add to the regex to
find and install the aarch64-linux kernel.
* gnu/system.scm (system-linux-image-file-name): Add entry for aarch64.
2017-07-23 23:33:18 +03:00
Efraim Flashner 826adfdb37
gnu: Add xf86-video-freedreno.
* gnu/packages/xorg.scm (xf86-video-freedreno): New variable.
2017-07-23 23:33:17 +03:00
Efraim Flashner 4adeb3f6e6
gnu: Add u-boot-odroid-c2.
* gnu/packages/bootloaders.scm (u-boot-odroid-c2): New variable.
2017-07-23 23:33:16 +03:00
Efraim Flashner 1313628339
gnu: u-boot: Update to 2017.07.
* gnu/packages/bootloaders.scm (u-boot): Update to 2017.07.
2017-07-23 23:33:13 +03:00
Marius Bakke 846cb73865
gnu: tevent: Update to 0.9.33.
* gnu/packages/samba.scm (tevent): Update to 0.9.33.
2017-07-23 22:01:29 +02:00
Marius Bakke 85a5800e52
gnu: talloc: Update to 2.1.10.
* gnu/packages/samba.scm (talloc): Update to 2.1.10.
2017-07-23 22:01:29 +02:00
Marius Bakke fbed150133
gnu: ldb: Update to 1.1.31.
* gnu/packages/samba.scm (ldb): Update to 1.1.31.
[native-inputs]: Add CMOCKA.
2017-07-23 22:01:28 +02:00
Marius Bakke 17c3f1fb67
gnu: cmocka: Update to 1.1.1.
* gnu/packages/check.scm (cmocka): Update to 1.1.1.
2017-07-23 22:01:28 +02:00
Marius Bakke 38bb9df150
gnu: tdb: Update to 1.3.14.
* gnu/packages/databases.scm (tdb): Update to 1.3.14.
2017-07-23 22:01:28 +02:00
Marius Bakke 09efef3384
gnu: python-scipy: Update to 0.19.1.
* gnu/packages/python.scm (python-scipy): Update to 0.19.1.
[source]: Use 'pypi-uri'.
2017-07-23 22:01:28 +02:00
Marius Bakke 71d20587a5
gnu: python-matplotlib: Update to 2.0.2.
* gnu/packages/python.scm (python-matplotlib): Update to 2.0.2.
[source]: Use 'pypi-uri'.
2017-07-23 22:01:28 +02:00
Marius Bakke 9e5ee6b60c
gnu: python-pyparsing: Update to 2.2.0.
* gnu/packages/python.scm (python-pyparsing, python2-pyparsing): Update to
2.2.0.
2017-07-23 22:01:27 +02:00
Marius Bakke 007176e710
gnu: python-pyparsing: Use 'modify-phases' syntax.
* gnu/packages/python.scm (python-pyparsing)[arguments]<#:phases>: Use
'modify-phases'.
2017-07-23 22:01:27 +02:00
Oleg Pykhalov 6e864d0081
gnu: Add xmobar.
gnu/packages/wm.scm (xmobar): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-23 15:29:36 -04:00
Ben Woodcroft d3dce32216
gnu: metabat: Fix boost-related compilation issue.
Reported by Leo Famulari.

* gnu/packages/patches/metabat-fix-boost-issue.patch: New file.
* gnu/packages/bioinformatics.scm (metabat): Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-07-23 22:35:52 +10:00
Efraim Flashner 8f155e3cff
gnu: bash-completion: Update to 2.7.
* gnu/packages/bash.scm (bash-completion): Update to 2.7.
2017-07-23 11:05:54 +03:00
Leo Famulari 6c1a317e29
Merge branch 'master' into core-updates 2017-07-23 03:42:12 -04:00
ng0 9478c05955
gnu: getmail: Update to 5.1.
* gnu/packages/mail.scm (getmail): Update to 5.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-22 20:34:47 -04:00
Ben Woodcroft f3f68a442c
gnu: metabat: Update to 2.11.1.
* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.1.
[source]: Add patch to fix compilation.
[arguments]: Adjust regular expressions modifying 'SConstruct'.
* gnu/packages/patches/metabat-fix-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-07-23 10:29:36 +10:00
Ben Woodcroft 897ab082b2
gnu: python-plastid: Update to 0.4.8.
* gnu/packages/bioinformatics.scm (python-plastid): Update to 0.4.8.
2017-07-23 10:29:36 +10:00
Ben Woodcroft 0620387a59
gnu: bcftools: Update to 1.5.
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.5.
[origin]: Remove fix-makefile patch.
[arguments]: Add configure flags, add LIBS make flag.  Do not delete
configure phase.
* gnu/packages/patches/bcftools-fix-makefile.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-07-23 10:29:36 +10:00
Ben Woodcroft 63fa0ffcd4
gnu: samtools: Update to 1.5.
* gnu/packages/bioinformatics.scm (samtools): Update to 1.5.
2017-07-23 10:29:36 +10:00
Ben Woodcroft 4fb6d1280e
gnu: htslib: Update to 1.5.
* gnu/packages/bioinformatics.scm (htslib): Update to 1.5.
2017-07-23 10:29:35 +10:00
Ben Woodcroft 60739965da
gnu: python-pysam: Update to 0.11.2.2.
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.11.2.2.
2017-07-23 10:29:35 +10:00
Ben Woodcroft bca2c57658
gnu: bamm: Use htslib-1.3.
* gnu/packages/bioinformatics (htslib-1.3): New variable.
(bamm)[inputs]: Replace htslib with htslib-1.3.
2017-07-23 10:29:35 +10:00
Ben Woodcroft 98593f9f51
gnu: bcftools: Update to 1.4.1.
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.4.1.
[arguments]: Move Makefile modifications from here ...
[source]: ... to added patch.  Adjust patch for update to 1.4.
* gnu/packages/patches/bcftools-fix-makefile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-07-23 10:29:35 +10:00
Ben Woodcroft 4ab1644049
gnu: samtools: Update to 1.4.1.
* gnu/packages/bioinformatics.scm (samtools): Update to 1.4.1.
[arguments]: Add '--with-htslib=system' configure flag.
[inputs]: Add htslib.
2017-07-23 10:29:34 +10:00
Ben Woodcroft a9e4a1e641
gnu: htslib: Update to 1.4.1.
* gnu/packages/bioinformatics.scm (htslib): Update to 1.4.1.
[inputs]: Add curl, openssl.
2017-07-23 10:29:34 +10:00
Ben Woodcroft c842d42593
gnu: samtools: Use "modify-phases" syntax.
* gnu/packages/bioinformatics.scm (samtools)[arguments]: Use "modify-phases"
syntax.
2017-07-23 10:29:34 +10:00
ng0 c62d1a6e6c
gnu: bspwm: Update to 0.9.3.
* gnu/packages/wm.scm (bspwm): Update to 0.9.3.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-22 20:17:46 -04:00
ng0 7e3c977da6
gnu: Add oksh.
* gnu/packages/shells.scm (oksh): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-22 20:15:21 -04:00
Ryan Moe 36378bd57e
gnu: quassel: Enable TLS.
* gnu/packages/patches/quassel-fix-tls-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/irc.scm (quassel)[source]: Use it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-22 20:04:53 -04:00
Tobias Geerinckx-Rice e745221408
gnu: youtube-dl: Update to 2017.07.23.
* gnu/packages/video.scm (youtube-dl): Update to 2017.07.23.
2017-07-23 01:59:32 +02:00
Tobias Geerinckx-Rice 4b8b245b83
gnu: mosh: Update to 1.3.2.
* gnu/packages/ssh.scm (mosh): Update to 1.3.2.
2017-07-23 01:27:29 +02:00
Ricardo Wurmus a68a83f015
gnu: Add openmolar.
* gnu/packages/medical.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Co-authored-by: Quiliro <quiliro@fsfla.org>
2017-07-22 23:48:58 +02:00
Ricardo Wurmus 2456153adc
gnu: Add python-pyqt+qscintilla.
* gnu/packages/qt.scm (python-pyqt+qscintilla): New variable.
2017-07-22 23:48:58 +02:00
Ricardo Wurmus 06d04dbcfc
gnu: Add python-qscintilla.
* gnu/packages/qt.scm (python-qscintilla): New variable.

Co-authored-by: Quiliro <quiliro@fsfla.org>
2017-07-22 23:48:57 +02:00
Ricardo Wurmus 3befd0a97c
gnu: Add qscintilla.
* gnu/packages/qt.scm (qscintilla): New variable.

Co-authored-by: Quiliro <quiliro@fsfla.org>
2017-07-22 23:48:57 +02:00
Ricardo Wurmus 056468dc5f
gnu: Add cran module.
* gnu/packages/cran.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/statistics.scm (r-colorspace): Move to cran.scm.
2017-07-22 23:48:57 +02:00
Mark H Weaver 30f8349efb
gnu: linux-libre: Update to 4.12.3.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.3.
(%linux-libre-hash): Update hash.
2017-07-22 14:46:00 -04:00
Mark H Weaver d422eac54e
gnu: linux-libre@4.9: Update to 4.9.39.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.39.
2017-07-22 14:45:06 -04:00
Mark H Weaver f97c67a275
gnu: linux-libre@4.4: Update to 4.4.78.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.78.
2017-07-22 14:44:24 -04:00
Ricardo Wurmus 3a4b0b126b
gnu: r-s4vectors: Update to 0.14.3.
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.14.3.
2017-07-22 17:31:19 +02:00
Ricardo Wurmus a35a1e9c13
gnu: r-genomicranges: Update to 1.28.4.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.28.4.
2017-07-22 17:22:07 +02:00
Marius Bakke aa51da7eef
gnu: Remove python-fake-factory leftovers.
This is a followup to c799eb2eb8.

* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-07-22 15:07:45 +02:00
Marius Bakke c799eb2eb8
gnu: Remove python-fake-factory.
Superseded by python-faker since ce7911ddae.

* gnu/packages/python.scm (python-fake-factory, python2-fake-factory):
Remove variables.
2017-07-22 14:31:28 +02:00
Marius Bakke 2580c2f07f
gnu: python-pyopenssl: Update to 17.2.0.
* gnu/packages/patches/python-pyopenssl-17.1.0-test-overflow.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update to 17.2.0.
[native-inputs]: Add PYTHON-FLAKY.
[source](patches): Remove.
2017-07-22 14:31:28 +02:00
Marius Bakke 4e52739c61
gnu: Add python-flaky.
* gnu/packages/python.scm (python-flaky, python2-flaky): New variables.
2017-07-22 14:31:27 +02:00
Marius Bakke 6027cb8a82
gnu: maim: Update to 5.4.64.
* gnu/packages/xdisorg.scm (maim): Update to 5.4.64.
2017-07-22 14:31:27 +02:00
Marius Bakke eb2b5f9d03
gnu: slop: Update to 6.3.47.
* gnu/packages/xdisorg.scm (slop): Update to 6.3.47.
[inputs]: Add GLEW.
2017-07-22 14:31:27 +02:00
Tobias Geerinckx-Rice 0cd95cefe0
gnu: parallel: Update to 20170722.
* gnu/packages/parallel.scm (parallel): Update to 20170722.
2017-07-22 13:47:26 +02:00
Tobias Geerinckx-Rice bc35c9d318
gnu: font-gnu-unifont: Update to 10.0.05.
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 10.0.05.
2017-07-22 13:47:26 +02:00
Tobias Geerinckx-Rice f7975a3bde
gnu: nano: Update to 2.8.6.
* gnu/packages/nano.scm (nano): Update to 2.8.6.
2017-07-22 13:47:25 +02:00
Tobias Geerinckx-Rice f03d8d67a5
gnu: acct: Update to 6.6.4.
* gnu/packages/acct.scm (acct): Update to 6.6.4.
2017-07-22 13:47:25 +02:00
Muriithi Frederick Muriuki 84fcb58050
gnu: Add conda.
* gnu/packages/package-management.scm (conda): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-07-22 12:26:30 +02:00
Muriithi Frederick Muriuki 4bc08b6e79
gnu: Add python-conda.
* gnu/packages/package-management.scm (python-conda, python2-conda): New
variables.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-07-22 12:26:29 +02:00
Muriithi Frederick Muriuki 513d35f191
gnu: Add python-anaconda-client.
* gnu/packages/package-management.scm (python-anaconda-client,
python2-anaconda-client): New variables.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-07-22 12:26:29 +02:00
Muriithi Frederick Muriuki 1f84ff5135
gnu: Add python-clyent.
* gnu/packages/python.scm (python-clyent, python2-clyent): New variables.
2017-07-22 12:26:29 +02:00
Muriithi Frederick Muriuki 3fee003950
gnu: Update python-pytz to 2017.2.
* gnu/packages/python.scm (python-pytz, python2-pytz): Update to 2017.2.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-07-22 12:26:29 +02:00
Tobias Geerinckx-Rice de469015c4
gnu: man-pages: Update to 4.12.
* gnu/packages/man.scm (man-pages): Update to 4.12.
2017-07-22 12:18:58 +02:00
Eric Bavier 1ffe41711b
gnu: tint2: Update to 0.14.6.
* gnu/packages/xdisorg.scm (tint2): Update to 0.14.6.
2017-07-21 22:41:24 -05:00
Leo Famulari e9185cbac6
gnu: icedtea@3: Update to 3.5.0 [security fixes].
Fixes CVE-2017-{10053,10067,10074,10074,10078,10081,10087,10089,10090,10096,
10101,10102,10107,10108,10109,10110,10111,10115,10116,10118,10135,10176,10193,
10198}.

* gnu/packages/java.scm (icedtea-8): Update to 3.5.0.
2017-07-21 17:30:08 -04:00
Mathieu Othacehe c800fd564b
services: cuirass: Add fallback parameter.
* gnu/services/cuirass.scm (<cuirass-configuration>)[fallback?]: New field.
(cuirass-shepherd-service): Take it into account.
* doc/guix.texi (Continuous Integration): Document it.
2017-07-21 21:46:47 +02:00
Leo Famulari 3c14378381
gnu: vim: Update to 8.0.0727 [fixes CVE-2017-11109].
* gnu/packages/vim.scm (vim): Update to 8.0.0727.
(vim-full)[source]: Add field and hold back at version 8.0.0600.
2017-07-21 15:20:23 -04:00
Leo Famulari 6f226c078c
gnu: mysql: Update to 5.7.19.
* gnu/packages/databases.scm (mysql): Update to 5.7.19.
2017-07-21 14:50:24 -04:00
Tobias Geerinckx-Rice 0cf9f9b1e3
gnu: libpsl: Update to 0.18.0.
* gnu/packages/web.scm (libpsl): Update to 0.18.0.
[native-inputs]: Add pkg-config.
[inputs]: Replace icu4c with libidn2; add libunistring.
2017-07-21 12:24:47 +02:00
Leo Famulari cd4f35c379
gnu: borg: Update to 1.0.11.
* gnu/packages/backup.scm (borg): Update to 1.0.11.
2017-07-21 01:23:25 -04:00
Leo Famulari f8fabfc99f
gnu: bitcoin-core: Actually build the graphical client.
* gnu/packages/finance.scm (bitcoin-core)[inputs]: Replace qtbase with qt.
2017-07-20 18:42:28 -04:00
Alex Vong 81c35029d4
gnu: heimdal: Fix CVE-2017-{6594,11103}.
* gnu/packages/patches/heimdal-CVE-2017-6594.patch,
gnu/packages/patches/heimdal-CVE-2017-11103.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/kerberos.scm (heimdal)[source]: Use them.
2017-07-20 15:33:53 -04:00
Arun Isaac cfd6a3b1ee
gnu: Add bmon.
* gnu/packages/networking.scm (bmon): New variable.
2017-07-20 23:19:24 +05:30
Ricardo Wurmus fb5dfa86b1
gnu: texlive-latex-mdwtools: Fix syntax error in description.
* gnu/packages/tex.scm (texlive-latex-mdwtools)[description]: Fix texinfo
syntax error.
2017-07-20 16:40:29 +02:00
Ricardo Wurmus 09acbb02c7
gnu: texlive-latex-environ: Fix invalid texinfo markup.
* gnu/packages/tex.scm (texlive-latex-environ)[description]: Fix texinfo
syntax errors.
2017-07-20 16:36:31 +02:00
Arun Isaac 0daa1d646a
gnu: Add mksh.
* gnu/packages/shells.scm (mksh): New variable.
2017-07-20 19:55:22 +05:30
Leo Famulari 8582e03ae5
gnu: Remove a left-over patch.
This is a followup to commit 426b0b898f.

* gnu/packages/patches/pcre-CVE-2017-7186.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-07-20 09:00:36 -04:00
Leo Famulari 426b0b898f
gnu: pcre: Update replacement to 8.41 [fixes CVE-2017-{7244,7245,7246}].
* gnu/packages/pcre.scm (pcre)[replacement]: Update to pcre-8.41.
(pcre/fixed): Replace with ...
(pcre-8.41): ... new variable.
2017-07-20 08:26:40 -04:00
Ludovic Courtès 8b113790fa
tests: Use 'virtual-machine' records instead of monadic procedures.
* gnu/tests/base.scm (%test-basic-os): Use 'let*' instead of 'mlet*' and
'virtual-machine' instead of 'system-qemu-image/shared-store-script'.
(run-mcron-test): Likewise.
(run-nss-mdns-test): Likewise.
* gnu/tests/dict.scm (run-dicod-test): Likewise.
* gnu/tests/mail.scm (run-opensmtpd-test): Likewise.
(run-exim-test): Likewise.
* gnu/tests/messaging.scm (run-xmpp-test): Likewise.
* gnu/tests/networking.scm (run-inetd-test): Likewise.
* gnu/tests/nfs.scm (run-nfs-test): Likewise.
* gnu/tests/ssh.scm (run-ssh-test): Likewise.
* gnu/tests/web.scm (run-nginx-test): Likewise.
2017-07-20 11:57:13 +02:00
Ludovic Courtès ed419fa0c5
vm: Add a <virtual-machine> type and associated gexp compiler.
* gnu/system/vm.scm (system-qemu-image/shared-store-script): Add
 #:options parameter and honor it.
(<virtual-machine>): New record type.
(virtual-machine): New macro.
(port-forwardings->qemu-options, virtual-machine-compiler): New
procedures.
2017-07-20 11:57:13 +02:00
Oleg Pykhalov c97cef0a91
gnu: Add premake4.
* gnu/packages/build-tools.scm (premake4): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-20 11:57:13 +02:00
Gábor Boskovits 742242a5be
gnu: Add java-commons-cli@1.2.
* gnu/packages/java.scm(java-commons-cli-1.2): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-07-20 11:57:12 +02:00
Theodoros Foradis 6158309450
gnu: Update g-wrap to use guile-2.2.
* gnu/packages/guile.scm (g-wrap): [propagated-inputs]: Use guile-2.2.
[arguments]: Add "--disable-Werror" to configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-20 11:57:12 +02:00
Ricardo Wurmus ab466d79e1
gnu: Add eolie.
* gnu/packages/gnome.scm (eolie): New variable.
2017-07-20 08:41:28 +02:00
Tobias Geerinckx-Rice 0762a1dbf4
gnu: perl-html-template: Update to 2.97.
* gnu/packages/web.scm (perl-html-template): Update to 2.97.
2017-07-20 02:10:55 +02:00
Tobias Geerinckx-Rice 1a34ca0e8f
gnu: openh264: Update to 1.7.0.
* gnu/packages/video.scm (openh264): Update to 1.7.0.
2017-07-20 01:36:51 +02:00
Tobias Geerinckx-Rice ba4e15ae85
gnu: gnome-mpv: Update to 0.12.
* gnu/packages/video.scm (gnome-mpv): Update to 0.12.
2017-07-20 01:36:50 +02:00
Jonathan Brielmaier 29ac89a635
gnu: Add 0xffff.
* gnu/packages/flashing-tools.scm (0xffff): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-07-20 00:54:52 +02:00
Jonathan Brielmaier 05c8851695
gnu: Add libusb@0.1.
* gnu/packages/libusb.scm (libusb-0.1): New variable.
* gnu/packages/patches/libusb-0.1-disable-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-07-20 00:54:52 +02:00
Maxim Cournoyer 7c0d4c3a6b
gnu: lapack: Fix hash of release 3.7.1
Apparently the release was modified (cleaned-up) in-place. An issue was opened
at https://github.com/Reference-LAPACK/lapack-release/issues/4.

* gnu/packages/maths.scm (lapack): Fix sha256 hash.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-07-20 00:54:51 +02:00
Ben Woodcroft ca8fb248de
gnu: Add patches missing from dist_patch_DATA.
Reported by Eric Bavier.

* gnu/local.mk (dist_patch_DATA): Add
gnu/packages/patches/hmmer-remove-cpu-specificity.patch,
gnu/packages/patches/jacal-fix-texinfo.patch,
gnu/packages/patches/python-pbr-fix-man-page-support.patch and
gnu/packages/patches/vsearch-unbundle-cityhash.patch.
2017-07-20 08:51:56 +10:00
Tobias Geerinckx-Rice dc05f6523e
gnu: qsyncthingtray: Update to 0.5.8.
* gnu/packages/sync.scm (qsyncthingtray): Update to 0.5.8.
2017-07-20 00:35:02 +02:00
Tobias Geerinckx-Rice 53cea7594c
gnu: dub: Update to 1.4.0.
* gnu/packages/ldc.scm (dub): Update to 1.4.0.
2017-07-20 00:34:57 +02:00
Ludovic Courtès b7158b767b
gnu: guile-bash: Add dependency on the "full" Bash.
Fixes a regression introduced in
704243e0c6.

* gnu/packages/guile.scm (guile-bash)[native-inputs]: Add BASH.
2017-07-19 22:59:18 +02:00
Ricardo Wurmus e7304ab18b
gnu: Add python-sphinx-1.6.
* gnu/packages/python.scm (python-sphinx-1.6): New variable.
2017-07-19 22:27:03 +02:00
Ricardo Wurmus 5f94ec913f
gnu: Add python-sphinxcontrib-websupport.
* gnu/packages/python.scm (python-sphinxcontrib-websupport): New variable.
2017-07-19 22:27:02 +02:00
Ricardo Wurmus 423d2136f0
gnu: Add python-xapian-bindings.
* gnu/packages/search.scm (python-xapian-bindings): New variable.
2017-07-19 22:27:02 +02:00
Leo Famulari 6d5deda16d
gnu: graphicsmagick: Update to 1.3.26.
* gnu/packages/imagemagick.scm (graphicsmagick): Update to 1.3.26.
[source]: Use url-fetch and add SourceForge URL. Remove snippet.
2017-07-19 13:56:43 -04:00
Leo Famulari 8016393eab
gnu: mpv: Update to 0.26.0.
* gnu/packages/video.scm (mpv): Update to 0.26.0.
2017-07-19 10:33:31 -04:00
Ricardo Wurmus fd40857938
gnu: r-bsgenome-hsapiens-ucsc-hg19: Update hash.
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19)[source]:
Update hash because the tarball changed in place.
2017-07-19 14:39:37 +02:00
Ricardo Wurmus 1fb9b6782b
gnu: snakemake: Update to 3.13.3.
* gnu/packages/python.scm (snakemake): Update to 3.13.3.
2017-07-19 14:39:37 +02:00
Ricardo Wurmus 688fbf572e
gnu: guitarix: Update to 0.35.5.
* gnu/packages/audio.scm (guitarix): Update to 0.35.5.
2017-07-19 14:39:37 +02:00
Efraim Flashner 2324541bd0
gnu: sortmerna: Limit support to x86_64 and i686 only.
* gnu/packages/bioinformatics.scm (sortmerna)[supported-systems]: New field.
2017-07-19 14:37:47 +03:00
Ludovic Courtès a388c951dd
gnu: totem: Do not build static libraries.
* gnu/packages/gnome.scm (totem)[arguments]: Pass "--disable-static".
This reduces the size of Totem from 11 MiB to 9 MiB.
2017-07-19 11:33:02 +02:00
Tobias Geerinckx-Rice 644e5f17df
download: Add OpenBSD mirrors.
* guix/download.scm (%mirrors) <openbsd>: Add HTTPS OpenBSD mirrors.
* gnu/packages/ntp.scm (openntpd)[source]: Use them.
* gnu/packages/ssh.scm (openssh)[source]: Likewise.
* gnu/packages/tls.scm (libressl)[source]: Likewise.
2017-07-19 01:42:08 +02:00
Tobias Geerinckx-Rice b225b1bec2
gnu: openntpd: Update to 6.1p1.
* gnu/packages/ntp.scm (openntpd): Update to 6.1p1.
2017-07-19 01:06:55 +02:00
Tobias Geerinckx-Rice c48fa0ad32
gnu: tlp: Update to 1.0.
* gnu/packages/linux.scm (tlp): Update to 1.0.
2017-07-19 01:06:54 +02:00
Tobias Geerinckx-Rice 137a330988
gnu: meson: Update to 0.41.1.
* gnu/packages/build-tools.scm (meson) Update to 0.41.1.
2017-07-19 01:06:54 +02:00
Ludovic Courtès ec5c24f9a8
gnu: totem: Disable automatic plugin installation.
* gnu/packages/gnome.scm (totem)[arguments]: Add #:configure-flags.
2017-07-18 22:46:47 +02:00
Ludovic Courtès 47ce813f7d
tests: ssh: Use 'guile-ssh'.
* gnu/tests/ssh.scm (run-ssh-test): Use GUILE-SSH instead of
GUILE2.0-SSH.
2017-07-18 22:38:03 +02:00
Ludovic Courtès 8d033e3e16
vm: 'iso9660-image' produces a single-file output.
* gnu/system/vm.scm (expression->derivation-in-linux-vm): Add
  #:single-file-output? and pass it to 'load-in-linux-vm'.
(iso9660-image): Pass #:single-file-output? to
'expression->derivation-in-linux-vm'.
* gnu/build/vm.scm (load-in-linux-vm): Add #:single-file-output? and
honor it.
2017-07-18 21:41:35 +02:00
Jelle Licht 45c18f8529
gnu: node: Add search path specification for 'NODE_PATH'.
* gnu/packages/node.scm (node)[native-search-paths]: New field.
2017-07-18 17:49:02 +02:00
Tobias Geerinckx-Rice 21ffcd65c5
vm: Increase disk size overhead estimate.
* gnu/build/vm.scm (estimated-partition-size): Add 25% to the graph size.
2017-07-18 17:14:38 +02:00
Tobias Geerinckx-Rice e333efd53a
gnu: libstaroffice: Update to 0.0.4.
* gnu/packages/libreoffice.scm (libstaroffice): Update to 0.0.4.
2017-07-18 17:14:38 +02:00
宋文武 852241eb7d
system: Add 'newuidmap' and 'newgidmap' to %SETUID-PROGRAMS.
* gnu/system.scm (%setuid-programs): Add 'newuidmap' and 'newgidmap'.
2017-07-18 22:16:08 +08:00
Ludovic Courtès 2acfe022a7
gnu: guile-static-stripped: Update to 2.2.
* gnu/packages/make-bootstrap.scm (%guile-static): Replace GUILE-2.0
with GUILE-2.2.  Use "guile-2.2-default-utf8.patch" instead of
"guile-default-utf8.patch".
* gnu/packages/patches/guile-2.2-default-utf8.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-07-18 15:31:12 +02:00
Ludovic Courtès 920f2c42ce
gnu: guile: Make relocatable patch version-independent.
* gnu/packages/patches/guile-relocatable.patch: Use
SCM_EFFECTIVE_VERSION instead of "2.0".
2017-07-18 15:31:12 +02:00
宋文武 172b3e2cc2
services: sysctl: Fix typo.
* gnu/services/sysctl.scm: Fix typo of 'make-sysctl-configuration'.
2017-07-18 20:16:03 +08:00
Tobias Geerinckx-Rice e4e525096b
gnu: moka-icon-theme: Update to 5.3.6.
* gnu/packages/gnome.scm (moka-icon-theme): Update to 5.3.6.
2017-07-18 13:46:23 +02:00
Tobias Geerinckx-Rice 29ddf4b6e8
gnu: edi: Update to 0.5.1.
* gnu/packages/enlightenment.scm (edi): Update to 0.5.1.
2017-07-18 13:46:23 +02:00
Ricardo Wurmus 84de27c83b
gnu: enblend-enfuse: Use texlive-tiny.
* gnu/packages/photo.scm (enblend-enfuse)[native-inputs]: Replace
texlive-minimal with texlive-tiny.
2017-07-18 10:00:51 +02:00
Ricardo Wurmus 9840b8faaf
gnu: c-toxcore: Update to 0.1.9.
* gnu/packages/messaging.scm (c-toxcore): Update to 0.1.9.
[build-system]: Switch to cmake-build-system.
[native-inputs]: Remove autoconf, automake, libtool, and check.
[inputs]: Rename to...
[propagated-inputs]: ...this.
[arguments]: Remove field.
2017-07-18 09:58:56 +02:00
ng0 8b5bf30804
gnu: Rename (gnu packages gforth) to (gnu packages forth).
* gnu/local.mk (GNU_SYSTEM_MODULES): Rename gforth.scm to forth.scm.
* gnu/packages/gforth.scm: Rename file to forth.scm.
* gnu/packages/forth.scm: Renamed from gforth.scm.
2017-07-18 09:58:56 +02:00
Ricardo Wurmus 8b89c1717c
gnu: python-numpy-documentation: Use texlive-union.
* gnu/packages/python.scm (python-numpy-documentation)[native-inputs]: Replace
"texlive" with a texlive-union.
2017-07-18 09:58:56 +02:00
Efraim Flashner 2805f9b2a0
gnu: raxml: Limit to x86_64 and i686 only.
* gnu/packages/bioinformatics.scm (raxml)[supported-systems]: New field.
2017-07-18 09:00:10 +03:00
Leo Famulari 4c4485f304
gnu: qemu: Fix CVE-2017-11334.
* gnu/packages/patches/qemu-CVE-2017-11334.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (qemu)[source]: Use it.
2017-07-17 23:47:03 -04:00
Leo Famulari 144c8db9bd
gnu: chicken: Fix CVE-2017-11343.
* gnu/packages/patches/chicken-CVE-2017-11343.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/scheme.scm (chicken)[source]: Use it.
2017-07-17 23:47:00 -04:00
Marius Bakke 27305769de
gnu: python-cryptograpy: Update to 2.0.
* gnu/packages/python.scm (python-cryptography-vectors,
python2-cryptography-vectors, python-cryptography, python2-cryptography):
Update to 2.0.
2017-07-18 01:31:10 +02:00
Marius Bakke b77cc624ec
gnu: orc: Update to 0.4.27.
* gnu/packages/gstreamer.scm (orc): Update to 0.4.27.
2017-07-18 01:30:16 +02:00
Leo Famulari 867baed07f
gnu: imagemagick: Update to 6.9.9-0.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-0.
2017-07-17 18:20:51 -04:00
Ludovic Courtès b19a49d015
locale: Demonadify the locale creation API.
* gnu/system/locale.scm (single-locale-directory): Use 'computed-file'
instead of 'gexp->derivation'.
(locale-directory): Adjust accordingly and do the same.
* gnu/system.scm (operating-system-directory-base-entries): Adjust
accordingly.
2017-07-17 23:41:36 +02:00
Ludovic Courtès 6d833b13b7
gnu: Remove glibc@2.21 and its traces.
* gnu/packages/base.scm (glibc-2.21): Remove.
* gnu/system/locale.scm (localedef-command)[maybe-version-directory]:
Remove.  Replace call with use of 'package-version'.
(single-locale-directory): Remove 'version>=' conditional.
2017-07-17 23:41:36 +02:00
Efraim Flashner 1cbcbc8600
gnu: screen: Update to 4.6.1.
* gnu/packages/screen.scm (screen): Update to 4.6.1.
2017-07-17 22:35:06 +03:00
Tobias Geerinckx-Rice 0862b95433
build, vm: Use a less common label.
* gnu/build/vm.scm (initialize-hard-disk): Use "GuixSD_image" as label.
* gnu/system/install.scm (installation-os): Likewise.
* gnu/system/vm.scm (system-disk-image): Likewise.
2017-07-17 20:20:24 +02:00
Alex Vong 70e7367df1
gnu: emacs-ahungry-theme: Upgrade to 1.4.0.
* gnu/packages/emacs.scm (emacs-ahungry-theme): Upgrade to 1.4.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-17 12:06:39 -04:00
Leo Famulari da20c38f35
gnu: dash: Use the release tarball.
* gnu/packages/shells.scm (dash)[source]: Use the release tarball
instead of a Git checkout.
[native-inputs]: Remove field.
[arguments]: Remove 'bootstrap' phase.
2017-07-17 11:48:46 -04:00
Feng Shu 371ca85f52
gnu: font-wqy-zenhei: Use 'font-build-system'.
* gnu/packages/fonts.scm (font-wqy-zenhei): Switch to font-build-system.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-17 15:13:41 +02:00
Feng Shu 7fc6ce46f9
gnu: font-wqy-microhei: Use 'font-build-system'.
* gnu/packages/fonts.scm (font-wqy-microhei): Switch to font-build-system.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-17 15:13:41 +02:00
Andy Patterson 9b7ee28d57
gnu: Add Poly/ML.
* gnu/packages/sml.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-17 15:13:41 +02:00
Efraim Flashner 7ad2a4f1d5
gnu: supertuxkart: Fix build on aarch64.
* gnu/packages/games.scm (supertuxkart)[source]: Add patch.
* gnu/packages/patches/supertuxkart-angelscript-ftbfs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-07-17 15:29:56 +03:00
Ricardo Wurmus 5beecc320e
gnu: Add sooperlooper.
* gnu/packages/patches/sooperlooper-build-with-wx-30.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/music.scm (sooperlooper): New variable.
2017-07-17 14:01:47 +02:00