In guile-json version 3, JSON objects are represented as hash tables, rather
than alists.
* guix/import/cpan.scm (string->license): Change the match expression to match
on lists, rather than vectors.
(module->dist-name, cpan-source-url, cpan-version): Change assoc-ref to
hash-ref.
(cpan-module->sexp): Change assoc-ref to hash-ref, and assoc-ref* to
hash-ref*.
* tests/cpan.scm ("source-url-http", "source-url-https"): Convert the alist to
a hash table.
With the change to guile-json version 3, JSON objects are represented as hash
tables, rather than alists. The cpan importer uses assoc-ref* on a hash table,
so add an equivalent function for hash tables.
* guix/import/utils.scm (hash-ref*): New procedure.
Previously, if the currently used archive type (e.g., "bz2") was
unavailable for the new version, 'guix refresh -u' would crash instead
of updating to the archive with the new type.
* guix/upstream.scm (package-update/url-fetch): When URL is #f, pick the
first of URLS; likewise for SIGNATURE-URL.
This is a followup to 81c3dc3224.
* guix/import/gnome.scm (jsonish->upstream-source): Use 'assoc-ref'
instead of 'hash-ref'.
(latest-gnome-release): Match a vector containing an alist, not a hash
table. Use 'fold' instead of 'hash-fold' over RELEASES.
Fixes <https://bugs.gnu.org/36777>.
Reported by Carl Dong <contact@carldong.me>.
* guix/derivations.scm (derivation/masked-inputs): Call
'delete-duplicates' on INPUTS.
* tests/derivations.scm ("derivation with duplicate fixed-output inputs"):
New test.
* guix/channels.scm (profile-channels): New procedure.
* guix/scripts/describe.scm (display-profile-info)[channels]: Define in
terms of 'profile-channels'.
* guix/import/cran.scm (%bioconductor-packages-list-url): Replace variable...
(bioconductor-packages-list-url): ...with this procedure.
(bioconductor-packages-list): Accept optional TYPE argument.
(latest-bioconductor-package-version): Same.
(fetch-description): Determine package type and use it in calls to
LATEST-BIOCONDUCTOR-PACKAGE-VERSION and BIOCONDUCTOR-URI.
(description->package): Pass package type to URI helper procedure; include
package type in annotation or experiment packages from Bioconducter.
* guix/ssh.scm (remote-authorize-signing-key): New variable.
* gnu/machine/ssh.scm (deploy-managed-host): Authorize coordinator's
signing key before any invocations of 'remote-eval'.
(deploy-managed-host): Display an error if a signing key does not exist.
* doc/guix.texi (Invoking guix deploy): Remove section describing manual
signing key authorization.
(Invoking guix deploy): Add section describing the 'authorize?' field.
* gnu/machine.scm (roll-back-machine, &deploy-error, deploy-error?)
(deploy-error-should-roll-back)
(deploy-error-captured-args): New variable.
* gnu/machine/ssh.scm (roll-back-managed-host): New variable.
* guix/scripts/deploy.scm (guix-deploy): Roll-back systems when a
deployment fails.
* doc/guix.texi (Invoking guix deploy): Add section describing
prerequisites for deploying as a non-root user.
* guix/remote.scm (remote-pipe-for-gexp): New optional 'become-command'
argument.
(%remote-eval): New optional 'become-command' argument.
(remote-eval): New 'become-command' keyword argument.
* guix/ssh.scm (remote-inferior): New optional 'become-command'
argument.
(inferior-remote-eval): New optional 'become-command' argument.
(remote-authorize-signing-key): New optional 'become-command' argument.
* gnu/machine/ssh.scm (machine-become-command): New variable.
(managed-host-remote-eval): Invoke 'remote-eval' with the
'#:become-command' keyword.
(deploy-managed-host): Invoke 'remote-authorize-signing-key' with the
'#:become-command' keyword.
* gnu/services.scm (activation-script): Return a <program-file> rather
than a <scheme-file>.
* gnu/deploy.scm (guix-deploy): Remove handling for '--system'.
(show-help): Remove documentation for '--system'.
(%default-options): Remove default setting for 'system'.
* gnu/machine/ssh.scm (machine-ssh-configuration): Add 'system' field.
(managed-host-remote-eval): Pass 'system' field to 'remote-eval'.
(machine-check-building-for-appropriate-system): New variable.
(check-deployment-sanity): Add call to
'machine-check-building-for-appropriate-system'.
* doc/guix.texi (Invoking guix deploy): Describe new 'system' field.
* guix/ssh.scm (remote-system): New variable.
* guix/remote.scm (remote-eval): Use result of 'remote-system' when
lowering the G-Expression.
(remote-eval): Add 'system' keyword argument.
(trampoline): Return a <program-file> rather than a <scheme-file>.
It turns out the list in the release notes is incomplete.
This updates the list from /gnu/store/<hash>-ghc-8.4.3/lib/ghc-8.4.3.
* guix/import/hackage.scm (ghc-standard-libraries): Update list.
* guix/scripts/deploy.scm (load-source-file): Enumerate and include all
submodules of (gnu machine) when loading the provided deployment
specification.
Fixes <https://bugs.gnu.org/36942>.
Reported by ison <ison@airmail.cc>.
guix/scripts/system/reconfigure.scm (install-bootloader-program): Switch
new symlink to the canonical bootloader configuration file.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* guix/build/cargo-build-system.scm (generate-all-checksums): New
procedure.
(update-cargo-lock, patch-cargo-checksums): New phases.
(%standard-phases): Add 'update=cargo-lock after 'configure and
'patch-cargo-checksums after 'patch-generated-file-shebangs.
* doc/guix.texi (Build System)[cargo-build-system]: Mention how
Cargo.lock files are handled.
Fixes <https://bugs.gnu.org/36878>.
Reported by Robert Vollmert <rob@vllmrt.net>.
* guix/scripts/system/reconfigure.scm (upgrade-shepherd-services): Load
all service files, rather than just those of services to be started.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
Fixes <https://bugs.gnu.org/36813>.
Reported by Jakob L. Kreuze <zerodaysfordays.sdf.org@sdf.org>.
* guix/gexp.scm (program-file-compiler): Pass #:system and #:target to
'gexp->script'.
(load-path-expression): Add #:system and #:target and honor them.
(gexp->script): Likewise.
* tests/gexp.scm ("program-file #:system"): New test.
* doc/guix.texi (G-Expressions): Adjust accordingly.
Without this, ant reported error messages like
Target "tests" does not exist in the project "null".
Simple using the jar-name is a good compromise.
* guix/build/ant-build-system.scm (default-build.xml): Add attribute
to sxml expression.
Guile-JSON 3.x is incompatible with Guile-JSON 1.x, which we relied on
until now: it maps JSON dictionaries to alists (instead of hash tables),
and JSON arrays to vectors (instead of lists). This commit is about
adjusting all the existing code to this new mapping.
* m4/guix.m4 (GUIX_CHECK_GUILE_JSON): New macro.
* configure.ac: Use it.
* doc/guix.texi (Requirements): Mention the Guile-JSON version.
* guix/git-download.scm (git-fetch)[guile-json]: Use GUILE-JSON-3.
* guix/import/cpan.scm (string->license): Expect vectors instead of
lists.
(module->dist-name): Use 'json-fetch' instead of 'json-fetch-alist'.
(cpan-fetch): Likewise.
* guix/import/crate.scm (crate-fetch): Likewise, and call 'vector->list'
for DEPS.
* guix/import/gem.scm (rubygems-fetch): Likewise.
* guix/import/json.scm (json-fetch-alist): Remove.
* guix/import/pypi.scm (pypi-fetch): Use 'json-fetch' instead of
'json-fetch-alist'.
(latest-source-release, latest-wheel-release): Call 'vector->list' on
RELEASES.
* guix/import/stackage.scm (stackage-lts-info-fetch): Use 'json-fetch'
instead of 'json-fetch-alist'.
(lts-package-version): Use 'vector->list'.
* guix/import/utils.scm (hash-table->alist): Remove.
(alist->package): Pass 'vector->list' on the inputs fields, and default
to the empty vector.
* guix/scripts/import/json.scm (guix-import-json): Remove call to
'hash-table->alist'.
* guix/swh.scm (define-json-reader): Expect pair? or null? instead of
hash-table?.
[extract-field]: Use 'assoc-ref' instead of 'hash-ref'.
(json->branches): Use 'map' instead of 'hash-map->list'.
(json->checksums): Likewise.
(json->directory-entries, origin-visits): Call 'vector->list' on the
result of 'json->scm'.
* tests/import-utils.scm ("alist->package with dependencies"): New test.
* gnu/installer.scm (build-compiled-file)[builder]: Use GUILE-JSON-3.
* gnu/installer.scm (installer-program)[installer-builder]: Likewise.
* gnu/installer/locale.scm (iso639->iso639-languages): Use 'assoc-ref'
instead of 'hash-ref', and pass vectors through 'vector->list'.
(iso3166->iso3166-territories): Likewise.
* gnu/system/vm.scm (system-docker-image)[build]: Use GUILE-JSON-3.
* guix/docker.scm (manifest, config): Adjust for Guile-JSON 3.
* guix/scripts/pack.scm (docker-image)[build]: Use GUILE-JSON-3.
* guix/import/github.scm (fetch-releases-or-tags): Update docstring.
(latest-released-version): Use 'assoc-ref' instead of 'hash-ref'. Pass
the result of 'fetch-releases-or-tags' to 'vector->list'.
* guix/import/launchpad.scm (latest-released-version): Likewise.
* guix/svn-download.scm (<svn-multi-reference>): New record type.
(svn-multi-reference-url, svn-multi-reference-revision,
svn-multi-reference-locations, svn-multi-reference-user-name,
svn-multi-reference-password, svn-multi-fetch): New procedures.
* guix/build/svn.scm (svn-fetch): Use "svn export" instead of "svn checkout"
because it does not include the .svn directory and allows us to fetch single
files.
This restores the behavior of 'guix lint' prior to commit
50fc2384fe.
* guix/lint.scm (check-source)[warnings-for-uris]: Rewrite to stop as
soon as one of URIS is valid.
Christopher Baines