nixo
/
guix-devel
1
0
Fork 0
Code Issues Pull Requests Releases Wiki Activity
39,583 Commits 1 Branch 0 Tags 104 MiB
Commit Graph

2194 Commits

Author SHA1 Message Date
Marius Bakke 027250f1a6
gnu: python2: Incorporate grafted changes. 
* gnu/packages/python.scm (python-2.7)[source](patches): Add
python2-CVE-2018-14647.patch and python2-CVE-2018-1000802.patch.
[replacement]: Remove field.
(python-2/fixed): Remove variable.
 2019-02-07 22:10:16 +01:00
Ricardo Wurmus ba88eea2b3
Merge branch 'master' into core-updates 2019-02-06 13:03:26 +01:00
Eric Bavier 3292219097
gnu: python2: Fix test flags. 
Reverts a988393997 in favor of a cleaner
approach.

* gnu/packages/python.scm (python-2.7)[arguments]: 'EXTRATESTOPTS' ->
'TESTOPTS'.  This overrides the default '-l' argument for memory leak checks
which is not compatible with the -j for parallelism.
 2019-01-22 22:00:50 -06:00
Christopher Baines 85e4579469
gnu: python-futures: Enable tests. 
Re-enable the tests, as the python-2 package now has the support
directory. Also, switch to running the tests via the test_futures.py script to
avoid errors like:

  AttributeError: 'AsCompletedTests' object has no attribute 'executor'

* gnu/packages/python.scm (python2-futures)[arguments]: Run the
test_futures.py script to run the tests.
 2019-01-21 19:51:52 +00:00
Christopher Baines d453b0e11d
gnu: python-2.7: Include /lib/python.../test/support. 
Don't remove the support directory from the /lib/python.../test/ directory, as
this is used from the test_support module.

  /gnu/store/...-python2-2.7.15/lib/python2.7/test/test_support.py:2: in <module>
      import test.support
  E   ImportError: No module named support

* gnu/packages/python.scm (python-2.7)[arguments]: Change the 'remove-tests
phase to not remove the support directory.
 2019-01-21 19:51:41 +00:00
Ricardo Wurmus 255d1bbe77
gnu: Move dbm databases to new module. 
* gnu/packages/databases.scm (gdbm, bdb, bdb-5.3): Move from here...
* gnu/packages/dbm.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/audio.scm,
gnu/packages/avahi.scm,
gnu/packages/backup.scm,
gnu/packages/cobol.scm,
gnu/packages/cyrus-sasl.scm,
gnu/packages/databases.scm,
gnu/packages/finance.scm,
gnu/packages/game-development.scm,
gnu/packages/gnome.scm,
gnu/packages/guile.scm,
gnu/packages/ibus.scm,
gnu/packages/kerberos.scm,
gnu/packages/linux.scm,
gnu/packages/mail.scm,
gnu/packages/man.scm,
gnu/packages/nvi.scm,
gnu/packages/openldap.scm,
gnu/packages/package-management.scm,
gnu/packages/php.scm,
gnu/packages/pulseaudio.scm,
gnu/packages/python.scm,
gnu/packages/rdf.scm,
gnu/packages/ruby.scm,
gnu/packages/sawfish.scm: Update module references.
 2019-01-16 16:08:22 +01:00
Ricardo Wurmus cd0322a3ef
gnu: Move sqlite to separate module. 
* gnu/packages/databases.scm (sqlite, sqlite-3.26.0, sqlite-with-fts5,
sqlite-with-column-metadata): Move variables from here...
* gnu/packages/sqlite.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/apl.scm,
gnu/packages/bittorrent.scm,
gnu/packages/calendar.scm,
gnu/packages/code.scm,
gnu/packages/crypto.scm,
gnu/packages/databases.scm,
gnu/packages/dc.scm,
gnu/packages/disk.scm,
gnu/packages/ebook.scm,
gnu/packages/education.scm,
gnu/packages/emacs.scm,
gnu/packages/emulators.scm,
gnu/packages/file-systems.scm,
gnu/packages/freedesktop.scm,
gnu/packages/ftp.scm,
gnu/packages/games.scm,
gnu/packages/geo.scm,
gnu/packages/gnome.scm,
gnu/packages/gnunet.scm,
gnu/packages/gnupg.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/gps.scm,
gnu/packages/guile.scm,
gnu/packages/ibus.scm,
gnu/packages/kerberos.scm,
gnu/packages/kodi.scm,
gnu/packages/lisp.scm,
gnu/packages/mail.scm,
gnu/packages/messaging.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/nfs.scm,
gnu/packages/ocaml.scm,
gnu/packages/package-management.scm,
gnu/packages/pdf.scm,
gnu/packages/photo.scm,
gnu/packages/php.scm,
gnu/packages/python.scm,
gnu/packages/qt.scm,
gnu/packages/ruby.scm,
gnu/packages/scheme.scm,
gnu/packages/sync.scm,
gnu/packages/syndication.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/web-browsers.scm,
gnu/packages/webkit.scm: Adjust module references.
 2019-01-16 16:08:22 +01:00
Ricardo Wurmus 44d10b1f72
gnu: Separate Python core packages from the rest. 
* gnu/packages/python.scm: Move hundreds of package definitions from here...
* gnu/packages/python-xyz.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ada.scm,
gnu/packages/admin.scm,
gnu/packages/android.scm,
gnu/packages/audio.scm,
gnu/packages/backup.scm,
gnu/packages/benchmark.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/bittorrent.scm,
gnu/packages/calendar.scm,
gnu/packages/check.scm,
gnu/packages/chemistry.scm,
gnu/packages/cluster.scm,
gnu/packages/compression.scm,
gnu/packages/connman.scm,
gnu/packages/crypto.scm,
gnu/packages/cups.scm,
gnu/packages/databases.scm,
gnu/packages/dav.scm,
gnu/packages/direct-connect.scm,
gnu/packages/disk.scm,
gnu/packages/django.scm,
gnu/packages/dlang.scm,
gnu/packages/docker.scm,
gnu/packages/ebook.scm,
gnu/packages/elf.scm,
gnu/packages/emacs.scm,
gnu/packages/emulators.scm,
gnu/packages/engineering.scm,
gnu/packages/enlightenment.scm,
gnu/packages/finance.scm,
gnu/packages/fltk.scm,
gnu/packages/fontutils.scm,
gnu/packages/freedesktop.scm,
gnu/packages/game-development.scm,
gnu/packages/games.scm,
gnu/packages/geo.scm,
gnu/packages/gl.scm,
gnu/packages/glib.scm,
gnu/packages/gnome.scm,
gnu/packages/gnupg.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/graph.scm,
gnu/packages/graphics.scm,
gnu/packages/graphviz.scm,
gnu/packages/gtk.scm,
gnu/packages/ham-radio.scm,
gnu/packages/image-processing.scm,
gnu/packages/image-viewers.scm,
gnu/packages/image.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/julia.scm,
gnu/packages/kde-frameworks.scm,
gnu/packages/key-mon.scm,
gnu/packages/libffi.scm,
gnu/packages/libreoffice.scm,
gnu/packages/libusb.scm,
gnu/packages/lirc.scm,
gnu/packages/logging.scm,
gnu/packages/machine-learning.scm,
gnu/packages/mail.scm,
gnu/packages/mate.scm,
gnu/packages/maths.scm,
gnu/packages/medical.scm,
gnu/packages/messaging.scm,
gnu/packages/monitoring.scm,
gnu/packages/mp3.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/nutrition.scm,
gnu/packages/openldap.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/password-utils.scm,
gnu/packages/patchutils.scm,
gnu/packages/pdf.scm,
gnu/packages/photo.scm,
gnu/packages/polkit.scm,
gnu/packages/protobuf.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/qt.scm,
gnu/packages/rdf.scm,
gnu/packages/ruby.scm,
gnu/packages/search.scm,
gnu/packages/selinux.scm,
gnu/packages/serialization.scm,
gnu/packages/shells.scm,
gnu/packages/simulation.scm,
gnu/packages/ssh.scm,
gnu/packages/statistics.scm,
gnu/packages/storage.scm,
gnu/packages/sync.scm,
gnu/packages/terminals.scm,
gnu/packages/textutils.scm,
gnu/packages/time.scm,
gnu/packages/tls.scm,
gnu/packages/tor.scm,
gnu/packages/tryton.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/virtualization.scm,
gnu/packages/vpn.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm,
gnu/packages/wicd.scm,
gnu/packages/xdisorg.scm,
gnu/packages/xorg.scm: Update module references.
 2019-01-15 14:46:44 +01:00
Ricardo Wurmus c4153008f7
gnu: python-numpy-documentation: Add missing packages to texlive-union. 
* gnu/packages/python.scm (python-numpy-documentation)[native-inputs]: Add
texlive-fonts-cm-super and texlive-latex-needspace to texlive-union.
 2019-01-15 13:05:22 +01:00
Eric Bavier 974537fc4c
gnu: python-pycodestyle: Fix build with Python 3.7. 
* gnu/packages/patches/python-pycodestyle-stdlib-tokenize-fix.patch: New
patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pycodestyle)[source]: Use it.
 2019-01-14 15:34:54 -06:00
Christopher Baines a988393997
gnu: python-2.7: Fix build. 
The -j flag is passed in through #:make-flags and EXTRATESTOPTS. This is
combined with the TESTOPTS, and in Python 2, that includes the -l flag by
default.

The -l flag, is for finding memory leaks in tests, and is incompatible with
the -j flag, and the build previously failed at the start of the 'check
phase. Therefore, remove the -l flag from the Python 2 testsuite, as it
doesn't sound like a useful thing to do when building the package for Guix.

* gnu/packages/python.scm (python-2.7): Add 'remove-findleaks-from-testopts
phase.
 2019-01-13 22:47:29 +00:00
Christopher Baines 24a23bea20
gnu: Add python-miniboa. 
python2-miniboa is required for the linkchecker testsuite.

* gnu/packages/python.scm (python-miniboa, python2-miniboa): New variable.
 2019-01-13 20:47:40 +00:00
Christopher Baines c4aa1ebc81
gnu: python-pillow: Update to 5.4.1. 
I'm looking at this, as this release fixes an issue with the Django testsuite:

https://github.com/python-pillow/Pillow/pull/3525

* gnu/packages/python.scm (python-pillow): Update to 5.4.1.
 2019-01-13 17:09:52 +00:00
Ricardo Wurmus 9e7f55de45
gnu: Add python-doctest-ignore-unicode. 
* gnu/packages/python.scm (python-doctest-ignore-unicode): New variable.
 2019-01-13 10:07:06 +01:00
Kei Kebreau ea600ff709
gnu: python-pillow: Update homepage. 
* gnu/packages/python.scm (python-pillow)[homepage]: Update URL.
 2019-01-12 16:39:26 -05:00
Kei Kebreau acbf312573
gnu: python-pillow: Update to 5.4.0 
* gnu/packages/python.scm (python-pillow): Update to 5.4.0.
[arguments]: Add 'patch-ldconfig' phase.
 2019-01-12 16:38:36 -05:00
Efraim Flashner ab7aa06cac
gnu: python-pygit2: Update to 0.27.3. 
* gnu/packages/python.scm (python-pygit2): Update to 0.27.3.
[arguments]: Add custom phase to compile with cffi support. Add custom
phase to not require specific versions of python-cffi.
[native-inputs]: Add python-pytest.
 2019-01-09 20:25:50 +02:00
Ricardo Wurmus 61f2587db9
gnu: python-rpy2: Move to (gnu packages statistics). 
* gnu/packages/python.scm (python-rpy2): Move from here...
* gnu/packages/statistics.scm (python-rpy2): ...to here.
 2019-01-07 15:55:06 +01:00
Ludovic Courtès 915c6bf60c
gnu: python2-fastlmm: Move to machine-learning.scm. 
This is a step towards removing OCaml modules from the closure
of (gnu packages python).

* gnu/packages/python.scm (python2-fastlmm): Move to...
* gnu/packages/machine-learning.scm (python2-fastlmm): ... here.
 2019-01-07 14:41:01 +01:00
Efraim Flashner 99e61f3022
gnu: python-pyicu: Update to 2.2. 
* gnu/packages/python.scm (python-pyicu): Update to 2.2.
 2019-01-06 11:09:59 +02:00
Efraim Flashner a0bb4af215
gnu: python-pysocks: Update to 1.6.8. 
* gnu/packages/python.scm (python-pysocks): Update to 1.6.8.
 2019-01-06 11:09:58 +02:00
Efraim Flashner 1fb68eefa1
gnu: python-packaging: Update to 18.0. 
* gnu/packages/python.scm (python-packaging): Update to 18.0.
 2019-01-06 11:09:58 +02:00
Efraim Flashner 3cf324665d
gnu: python-astroid: Update to 2.1.0. 
* gnu/packages/python.scm (python-astroid): Update to 2.1.0.
 2019-01-06 11:09:58 +02:00
Efraim Flashner 36df69d6fe
gnu: python-imagesize: Update to 1.1.0. 
* gnu/packages/python.scm (python-imagesize): Update to 1.1.0.
 2019-01-06 11:09:57 +02:00
Efraim Flashner 46930b7ea9
gnu: python-sphinx-alabaster-theme: Update to 0.7.12. 
* gnu/packages/python.scm (python-sphinx-alabaster-theme): Update to 0.7.12.
 2019-01-06 11:09:57 +02:00
Ricardo Wurmus 9fb5771af7
gnu: jupyter: Add missing dependency. 
* gnu/packages/python.scm (jupyter)[propagated-inputs]: Add python-qtconsole.
[home-page]: Use https URL.
[arguments]: Update comment on why tests are disabled.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus 38306e1168
gnu: Add python-qtconsole. 
* gnu/packages/python.scm (python-qtconsole): New variable.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus 91dd8b3687
gnu: python-notebook: Update to 5.7.4. 
* gnu/packages/python.scm (python-notebook): Update to 5.7.4.
[arguments]: Use INVOKE for tests.
[propagated-inputs]: Remove python-ipython; add python-prometheus-client,
python-send2trash, and python-terminado.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus 493e5e6daa
gnu: python-jupyter-console: Fix inputs. 
* gnu/packages/python.scm (python-jupyter-console)[propagated-inputs]: Remove
python-ipython; replace python-prompt-toolkit with python-prompt-toolkit-1.
[native-inputs]: Add python-nose.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus 4fc112b452
gnu: python-ipython: Remove dependency on python-jupyter-core-minimal. 
* gnu/packages/python.scm (python-ipython)[propagated-inputs]: Remove
python-jupyter-core-minimal.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus 88bf9be38e
gnu: python-ipywidgets: Enable tests. 
* gnu/packages/python.scm (python-ipywidgets)[arguments]: Remove.
[native-inputs]: Add python-nose and python-pytest.
[propagated-inputs]: Remove python-ipykernel.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus fec14302d5
gnu: python-widgetsnbextension: Update to 3.4.2. 
* gnu/packages/python.scm (python-widgetsnbextension): Update to 3.4.2.
[propagated-inputs]: Add python-ipykernel.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus b6fc288e57
gnu: Add python-send2trash. 
* gnu/packages/python.scm (python-send2trash, python2-send2trash): New
variables.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus abe50aa369
gnu: Add python-prometheus-client. 
* gnu/packages/python.scm (python-prometheus-client,
python2-prometheus-client): New variables.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus ffabccb22f
gnu: python-jupyter-client: Update to 5.2.4. 
* gnu/packages/python.scm (python-jupyter-client): Update to 5.2.4.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus 75246daff2
gnu: python-ipython: Break dependency on python-ipykernel. 
* gnu/packages/python.scm (python-ipython)[propagated-inputs]: Remove
python-ipykernel.
[arguments]: Delete more broken tests.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus f0eb442c20
gnu: python-ipykernel: Update to 5.1.0. 
* gnu/packages/python.scm (python-ipykernel): Update to 5.1.0.
[arguments]: Enable tests.
[propagated-inputs]: Add python-ipython.
[native-inputs]: Add python-pytest and python-nose.
 2019-01-02 16:33:57 +01:00
Ricardo Wurmus 92a9f93615
gnu: python-ipython: Update to 5.8.0. 
* gnu/packages/python.scm (python-ipython): Update to 5.8.0.
[propagated-inputs]: Replace python-prompt-toolkit with
python-prompt-toolkit-1.
[arguments]: Use INVOKE in the "check" phase; return #T from the "fix-tests"
phase.
 2019-01-02 16:33:56 +01:00
Ricardo Wurmus 464cb5b55d
gnu: Add python-prompt-toolkit-1. 
* gnu/packages/python.scm (python-prompt-toolkit-1, python2-prompt-toolkit-1):
New variables.
 2019-01-02 16:33:56 +01:00
Ricardo Wurmus 80486d6673
gnu: python-prompt-toolkit: Update to 2.0.7. 
* gnu/packages/python.scm (python-prompt-toolkit): Update to 2.0.7.
[arguments]: Enable tests; add phase "post-install-check" and delete "check"
phase.
[native-inputs]: Add python-pytest.
 2019-01-02 16:33:56 +01:00
Ricardo Wurmus eecaf17086
gnu: python-hy: Use INVOKE. 
* gnu/packages/python.scm (python-hy)[arguments]: Use INVOKE.
 2019-01-02 16:33:56 +01:00
Ricardo Wurmus 13e7c884c7
gnu: python-clint: Use INVOKE. 
* gnu/packages/python.scm (python-clint)[arguments]: Use INVOKE.
 2019-01-02 16:33:56 +01:00
Ricardo Wurmus ec933e05a2
gnu: python-configargparse: Use INVOKE. 
* gnu/packages/python.scm (python-configargparse)[arguments]: Use INVOKE.
 2019-01-02 16:33:56 +01:00
Ricardo Wurmus cd70798a23
gnu: python-docopt: Use INVOKE. 
* gnu/packages/python.scm (python-docopt)[arguments]: Use INVOKE.
 2019-01-02 16:33:53 +01:00
Leo Famulari eff366b469
gnu: python-lxml: Update to 4.2.5 [fixes CVE-2018-19787]. 
* gnu/packages/python.scm (python-lxml, python2-lxml): Update to 4.2.5.
 2018-12-31 10:36:43 -05:00
Efraim Flashner fb075e2fda
gnu: python-apache-libcloud: Update to 2.4.0. 
* gnu/packages/python.scm (python-apache-libcloud): Update to 2.4.0.
 2018-12-26 12:29:45 +02:00
Ludovic Courtès 86974d8a92
Merge branch 'master' into core-updates 2018-12-20 18:39:04 +01:00
Vagrant Cascadian 9f23f6bc2f
gnu: python-pyelftools: Fix tests with python 3.7. 
* gnu/packages/python.scm (python-pyelftools)
  [native-inputs]: Remove python-setuptools.
  [arguments]: Add set-pythonpath phase.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2018-12-16 11:55:13 +02:00
Christopher Baines 95ae013092
gnu: python-celery: Update to 4.2.1. 
This is an attempt to get the package building after the update to Python
3.7. I'm not sure this totally works, as the tests detect an incompatibility
with Python 3.7 due to use of "async". But with the tests disabled, you can at
least import the celery module, which is a start.

* gnu/packages/python.scm (python-celery): Update to 4.2.1.
[arguments]: Switch to py.test, from nose, disable the tests and loosen the
requirements on pytest.
[native-inputs]: Remove python-nose, add python-pytest and python-case.
[home-page]: Change from HTTP to HTTPS.
 2018-12-12 09:03:28 +01:00
Christopher Baines ae218b75f6
gnu: python-billiard: Update to 3.5.0.5. 
This is to enable updating python-celery.

* gnu/packages/python.scm (python-billiard): Update to 3.5.0.5.
[native-inputs]: Remove python-nose, add python-case and python-pytest.
 2018-12-12 09:03:27 +01:00