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1005 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice 442ce03acc
gnu: r-sourcetools: Update to 0.1.7. 
* gnu/packages/statistics.scm (r-sourcetools): Update to 0.1.7.
 2018-04-26 21:08:59 +02:00
Ricardo Wurmus 6ab97ed56a
gnu: r-lambda-r: Update to 1.2.2. 
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.2.
[arguments]: Remove.
[native-inputs]: Remove.
[propagated-inputs]: Add r-formatr.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 500224cb4c
gnu: r-car: Update to 3.0-0. 
* gnu/packages/statistics.scm (r-car): Update to 3.0-0.
[propagated-inputs]: Add r-abind, r-cardata, r-lme4, r-maptools, r-nlme, and
r-rio.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus f1c7a24280
gnu: Add r-cardata. 
* gnu/packages/statistics.scm (r-cardata): New variable.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 75a40e89d9
gnu: r-lme4: Update to 1.1-17. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-17.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 30d76d442a
gnu: r-futile-options: Update to 1.0.1. 
* gnu/packages/statistics.scm (r-futile-options): Update to 1.0.1.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 4184649940
gnu: r-xml: Update to . 
* gnu/packages/statistics.scm (r-xml): Update to .
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus ff91ed7d56
gnu: r-rsqlite: Update to 2.1.0. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.1.0.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 1aa2ad5b32
gnu: r-survival: Update to 2.42-3. 
* gnu/packages/statistics.scm (r-survival): Update to 2.42-3.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus 6fa9cf1abb
gnu: r-nlme: Update to 3.1-137. 
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-137.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus ac6672d539
gnu: r-cluster: Update to 2.0.7-1. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.7-1.
 2018-04-21 23:07:52 +02:00
Ricardo Wurmus c43ea99b39
gnu: r-minimal: Update to 3.4.4. 
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.4.
 2018-04-21 23:07:52 +02:00
Mark H Weaver c52872bfc4
Merge branch 'master' into core-updates 2018-04-21 05:02:52 -04:00
Ricardo Wurmus 8d3dda021a
gnu: r-rcurl: Respect CURL_CA_BUNDLE variable. 
Fixes <https://debbugs.gnu.org/31189>

* gnu/packages/statistics.scm (r-rcurl)[arguments]: Patch options to respect
CURL_CA_BUNDLE if no "cainfo" option is provided.
 2018-04-17 12:59:59 +02:00
Tobias Geerinckx-Rice ee280cea93
gnu: r-matrix: Update to 1.2-14. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-14.
 2018-04-17 04:02:11 +02:00
Tobias Geerinckx-Rice 361cee7124
gnu: r-hms: Update to 0.4.2. 
* gnu/packages/statistics.scm (r-hms): Update to 0.4.2.
 2018-04-17 04:02:10 +02:00
Tobias Geerinckx-Rice e354b03223
gnu: r-yaml: Update to 2.1.18. 
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.18.
 2018-04-17 04:02:10 +02:00
Tobias Geerinckx-Rice 8998583417
gnu: r-ade4: Update to 1.7-11. 
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-11.
 2018-04-17 04:02:10 +02:00
Tobias Geerinckx-Rice 9d448362a1
gnu: r-lubridate: Update to 1.7.4. 
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.4.
 2018-04-17 04:02:10 +02:00
Mark H Weaver f89aa1521a
Merge branch 'master' into core-updates 2018-04-10 00:42:22 -04:00
Tobias Geerinckx-Rice e155c6034b
gnu: r-ggthemes: Update to 3.4.2. 
* gnu/packages/statistics.scm (r-ggthemes): Update to 3.4.2.
 2018-04-05 06:38:58 +02:00
Tobias Geerinckx-Rice 184020432b
gnu: r-caret: Update to 6.0-79. 
* gnu/packages/statistics.scm (r-caret): Update to 6.0-79.
 2018-04-05 06:38:57 +02:00
Tobias Geerinckx-Rice 0cb4fb81da
gnu: r-viridis: Update to 0.5.1. 
* gnu/packages/statistics.scm (r-viridis): Update to 0.5.1.
 2018-04-05 06:38:57 +02:00
Tobias Geerinckx-Rice ec2a2682fe
gnu: r-matrix: Update to 1.2-13. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-13.
 2018-04-05 06:38:57 +02:00
Tobias Geerinckx-Rice 9ed1824eeb
gnu: r-cluster: Update to 2.0.7. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.7.
 2018-04-05 06:38:57 +02:00
Tobias Geerinckx-Rice 4c44dd7aca
gnu: r-glmnet: Update to 2.0-16. 
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-16.
 2018-04-05 06:38:56 +02:00
Tobias Geerinckx-Rice 95fb6b0413
gnu: r-lme4: Update to 1.1-16. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-16.
 2018-03-29 17:45:45 +02:00
Marius Bakke 5576cfabf3
Merge branch 'master' into core-updates 2018-03-29 17:34:41 +02:00
Mark H Weaver e3cfef22c4
gnu: Use invoke and return #t from all builders. 
* gnu/packages/admin.scm, gnu/packages/android.scm, gnu/packages/audio.scm,
gnu/packages/avr.scm, gnu/packages/base.scm, gnu/packages/bioinformatics.scm,
gnu/packages/certs.scm, gnu/packages/check.scm, gnu/packages/code.scm,
gnu/packages/commencement.scm, gnu/packages/dictionaries.scm,
gnu/packages/docbook.scm, gnu/packages/emacs.scm, gnu/packages/embedded.scm,
gnu/packages/fonts.scm, gnu/packages/games.scm, gnu/packages/gnome.scm,
gnu/packages/gnu-doc.scm, gnu/packages/guile.scm, gnu/packages/hurd.scm,
gnu/packages/javascript.scm, gnu/packages/libreoffice.scm,
gnu/packages/linux.scm, gnu/packages/lisp.scm, gnu/packages/lxde.scm,
gnu/packages/mail.scm, gnu/packages/markup.scm, gnu/packages/mate.scm,
gnu/packages/pkg-config.scm, gnu/packages/qt.scm, gnu/packages/rust.scm,
gnu/packages/scheme.scm, gnu/packages/sdl.scm, gnu/packages/statistics.scm,
gnu/packages/syncthing.scm, gnu/packages/tex.scm, gnu/packages/web.scm,
gnu/packages/wine.scm, gnu/packages/xfce.scm: In the builders of packages
using 'trivial-build-system', use invoke where appropriate, raise exceptions
on errors, and otherwise return #t.
 2018-03-27 21:35:41 -04:00
Tobias Geerinckx-Rice 6e54870f60
gnu: r-randomforest: Update to 4.6-14. 
* gnu/packages/statistics.scm (r-randomforest): Update to 4.6-14.
 2018-03-27 03:26:45 +02:00
Tobias Geerinckx-Rice 917378f787
gnu: r-blob: Update to 1.1.1. 
* gnu/packages/statistics.scm (r-blob): Update to 1.1.1.
[propagated-inputs]: Add r-prettyunits.
 2018-03-27 03:26:45 +02:00
Tobias Geerinckx-Rice ef8b9a771c
gnu: r-spams: Use predictable source URI. 
* gnu/packages/statistics.scm (r-spams)[source]: Use predictable
URI.
 2018-03-20 19:49:46 +01:00
Mark H Weaver 647888845c
Merge branch 'master' into core-updates 2018-03-20 00:49:05 -04:00
Tobias Geerinckx-Rice a768e41523
gnu: r-minimal, r: Update to 3.4.4. 
There seem to be no dependency updates as far as I could find.

* gnu/packages/statistics.scm (r-minimal): Update to 3.4.4.
 2018-03-19 19:22:32 +01:00
Tobias Geerinckx-Rice bae598d6c9
gnu: r-withr: Update to 2.1.2. 
* gnu/packages/statistics.scm (r-withr): Update to 2.1.2.
 2018-03-19 13:24:27 +01:00
Tobias Geerinckx-Rice d062957a87
gnu: Use HTTPS for r-project.org home pages. 
* gnu/packages/cran.scm (r-performanceanalytics, r-qap, r-gclus, r-leaps)
(r-splus2r, r-ifultools, r-sapa, r-quantmod, r-tseries, r-wmtsa, r-fractal)
(r-urca, r-trend, r-expm, r-complexplus, r-powerplus, r-signal, r-abind)
(r-prroc)[home-page]: Use HTTPS.
* gnu/packages/emacs.scm (emacs-ess)[home-page]: Likewise.
* gnu/packages/graph.scm (r-diffusionmap)[home-page]: Likewise.
* gnu/packages/statistics.scm (r-minimal, r-quantreg)[home-page]: Likewise.
 2018-03-17 16:37:20 +01:00
Tobias Geerinckx-Rice 5ecfa6f565
gnu: r-stringi: Update to 1.1.7. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.7.
 2018-03-14 07:47:32 +01:00
Efraim Flashner 4510f976dc
gnu: r-tgconfig: Declare a source file-name. 
* gnu/packages/statistics.scm (r-tgconfig)[source]: Declare a source
file-name.
 2018-03-13 21:48:27 +02:00
Efraim Flashner 76b27f427a
gnu: r-tgstat: Declare a source file-name. 
* gnu/packages/statistics.scm (r-tgstat)[source]: Declare a source
file-name.
 2018-03-13 21:48:26 +02:00
Ricardo Wurmus 9a7b578463
gnu: r-minimal: Add bash to inputs. 
* gnu/packages/statistics.scm (r-minimal)[inputs]: Add bash-minimal.
 2018-03-13 20:01:54 +01:00
Ricardo Wurmus 5e51c268e4
gnu: r-rmarkdown: Use Pandoc 1. 
* gnu/packages/statistics.scm (r-rmarkdown)[propagated-inputs]: Replace
"ghc-pandoc" with "ghc-pandoc-1".
 2018-03-13 20:01:54 +01:00
Ricardo Wurmus 0fa4702c04
gnu: r-minimal: Respect SOURCE_DATE_EPOCH in srcfile. 
Fixes <https://bugs.gnu.org/30729>.

* gnu/packages/statistics.scm (r-minimal)[arguments]: Replace timestamp hack
with patch to "srcfile" and "srcfilecopy".
 2018-03-10 14:25:09 +01:00
Ricardo Wurmus 1b5905fe68
gnu: r-fnn: Remove duplicate definition. 
* gnu/packages/cran.scm (r-fnn)[home-page]: Use HTTPS.
* gnu/packages/statistics.scm (r-fnn): Remove.
 2018-03-08 23:38:41 +01:00
Ricardo Wurmus b7ce825c85
gnu: r-sfsmisc: Update to 1.1-2. 
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-2.
 2018-03-08 23:31:55 +01:00
Ricardo Wurmus 69c38faa91
gnu: r-nmf: Update to 0.21.0. 
* gnu/packages/statistics.scm (r-nmf): Update to 0.21.0.
 2018-03-08 23:31:55 +01:00
Ricardo Wurmus 1b17fdbe41
gnu: r-openssl: Update to 1.0.1. 
* gnu/packages/statistics.scm (r-openssl): Update to 1.0.1.
 2018-03-08 23:31:55 +01:00
Oleg Pykhalov 06c15ee585
gnu: Add r-colorout. 
* gnu/packages/statistics.scm (r-colorout): New public variable.
 2018-03-07 16:38:26 +03:00
Ricardo Wurmus fe58ab013b
gnu: r-lambda-r: Run unit tests. 
* gnu/packages/statistics.scm (r-lambda-r)[native-inputs]: Add r-runit.
[arguments]: Add build phase to delete test logs.
 2018-03-06 16:03:04 +01:00
Ricardo Wurmus 08ddb98aef
gnu: r-gtools: Make output deterministic. 
* gnu/packages/statistics.scm (r-gtools)[arguments]: Add build phase to avoid
running tempdir at build time.
 2018-03-06 16:03:04 +01:00
Ricardo Wurmus dbb3581383
gnu: Add java-jdistlib. 
* gnu/packages/statistics.scm (java-jdistlib): New variable.
 2018-03-03 21:27:33 +01:00
Ricardo Wurmus fac40f38fe
gnu: r-dbi: Update to 0.8. 
* gnu/packages/statistics.scm (r-dbi): Update to 0.8.
 2018-03-03 10:46:35 +01:00
Ricardo Wurmus bfae3f7121
gnu: r-lubridate: Update to 1.7.3. 
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.3.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus eaf0905970
gnu: r-tidyselect: Update to 0.2.4. 
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.4.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 35d12b05f0
gnu: r-rmarkdown: Update to 1.9. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.9.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus dafd13d5b2
gnu: r-rcpparmadillo: Update to 0.8.400.0.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.400.0.0.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 36e1202b2c
gnu: r-yaml: Update to 2.1.17. 
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.17.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus e3ddb56329
gnu: r-gdtools: Update to 0.1.7. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.7.
[inputs]: Add zlib.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus e24ccf46f1
gnu: r-rpart: Update to 4.1-13. 
* gnu/packages/statistics.scm (r-rpart): Update to 4.1-13.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 744e06e717
gnu: r-mass: Update to 7.3-49. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-49.
 2018-03-01 21:28:53 +01:00
Ricardo Wurmus 8cc41c8ff5
gnu: r-forcats: Update to 0.3.0. 
* gnu/packages/statistics.scm (r-forcats): Update to 0.3.0.
[propagated-inputs]: Add r-rlang.
 2018-02-22 11:18:03 +01:00
Ricardo Wurmus e5e56cc9eb
gnu: r-xml: Update to 3.98-1.10. 
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.10.
[inputs]: Add zlib.
[native-inputs]: Add pkg-config.
 2018-02-22 11:18:03 +01:00
Ricardo Wurmus 0c43f4814b
gnu: r-devtools: Update to 1.13.5. 
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.5.
 2018-02-22 11:18:03 +01:00
Ricardo Wurmus fae330c354
gnu: r-dbplyr: Update to 1.2.1. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.2.1.
 2018-02-22 11:18:03 +01:00
Ricardo Wurmus 1ea6639868
gnu: r-rlang: Update to 0.2.0. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.2.0.
 2018-02-22 11:18:03 +01:00
Ricardo Wurmus 5b62630280
gnu: r-knitr: Update to 1.20. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.20.
 2018-02-22 11:18:03 +01:00
Ricardo Wurmus b4c6f4caf7
gnu: r-stringr: Update to 1.3.0. 
* gnu/packages/statistics.scm (r-stringr): Update to 1.3.0.
[propagated-inputs]: Add r-glue.
 2018-02-22 11:18:02 +01:00
Ricardo Wurmus 1e898bbaea
gnu: r-pryr: Update to 0.1.4. 
* gnu/packages/statistics.scm (r-pryr): Update to 0.1.4.
 2018-02-19 09:53:04 +01:00
Ricardo Wurmus 50ee54eabd
gnu: r-bh: Update to 1.66.0-1. 
* gnu/packages/statistics.scm (r-bh): Update to 1.66.0-1.
 2018-02-19 09:53:04 +01:00
Ricardo Wurmus ffa7fe3062
gnu: r-nlme: Update to 3.1-131.1. 
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-131.1.
 2018-02-19 09:53:04 +01:00
Mark H Weaver 288b8fd5e9
Merge branch 'master' into core-updates 2018-02-13 13:17:15 -05:00
Ricardo Wurmus 1ee14481d2
gnu: r-lubridate: Update to 1.7.2. 
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.2.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus 4ff5fc6fa0
gnu: r-ranger: Update to 0.9.0. 
* gnu/packages/statistics.scm (r-ranger): Update to 0.9.0.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus f9ee1741f9
gnu: r-lme4: Update to 1.1-15. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-15.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus 45ec40818b
gnu: r-quantreg: Update to 5.35. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.35.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus 725673ad6f
gnu: r-rcppeigen: Update to 0.3.3.4.0. 
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.4.0.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus c71cd58240
gnu: r-pbapply: Update to 1.3-4. 
* gnu/packages/statistics.scm (r-pbapply): Update to 1.3-4.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus f66a34fcc4
gnu: r-vgam: Update to 1.0-5. 
* gnu/packages/statistics.scm (r-vgam): Update to 1.0-5.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus 09da3d4403
gnu: r-fpc: Update to 2.1-11. 
* gnu/packages/statistics.scm (r-fpc): Update to 2.1-11.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus 23fb604725
gnu: r-pcapp: Update to 1.9-73. 
* gnu/packages/statistics.scm (r-pcapp): Update to 1.9-73.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus fe394eac82
gnu: r-zoo: Update to 1.8-1. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-1.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus b216fdf21f
gnu: r-hmisc: Update to 4.1-1. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.1-1.
 2018-02-13 16:18:45 +01:00
Ricardo Wurmus c4f148ab0a
gnu: r-tidyr: Update to 0.8.0. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.8.0.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus be8db0a0ab
gnu: r-viridislite: Update to 0.3.0. 
* gnu/packages/statistics.scm (r-viridislite): Update to 0.3.0.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus 9604af890d
gnu: r-viridis: Update to 0.5.0. 
* gnu/packages/statistics.scm (r-viridis): Update to 0.5.0.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus a46c71924c
gnu: r-matrixstats: Update to 0.53.1. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.53.1.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus e04b71a83b
gnu: r-mvtnorm: Update to 1.0-7. 
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-7.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus f7d7dd41f1
gnu: r-r-rsp: Update to 0.42.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.42.0.
[propagated-inputs]: Add r-digest.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus 2cd6bb5da4
gnu: r-r-cache: Update to 0.13.0. 
* gnu/packages/statistics.scm (r-r-cache): Update to 0.13.0.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus 48237fde89
gnu: r-bigmemory: Update to 4.5.33. 
* gnu/packages/statistics.scm (r-bigmemory): Update to 4.5.33.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus a566b3f9e6
gnu: r-synchronicity: Update to 1.3.2. 
* gnu/packages/statistics.scm (r-synchronicity): Update to 1.3.2.
[propagated-inputs]: Add r-uuid.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus 8ff6853c13
gnu: r-irlba: Update to 2.3.2. 
* gnu/packages/statistics.scm (r-irlba): Update to 2.3.2.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus a63117c8ae
gnu: r-dt: Update to 0.4. 
* gnu/packages/statistics.scm (r-dt): Update to 0.4.
[propagated-inputs]: Add r-crosstalk.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus 1324f85b43
gnu: r-rprojroot: Update to 1.3-2. 
* gnu/packages/statistics.scm (r-rprojroot): Update to 1.3-2.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus edab1c049b
gnu: r-hms: Update to 0.4.1. 
* gnu/packages/statistics.scm (r-hms): Update to 0.4.1.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus 80f72101b4
gnu: r-withr: Update to 2.1.1. 
* gnu/packages/statistics.scm (r-withr): Update to 2.1.1.
[propagated-inputs]: Remove r-lattice.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus ecba783c29
gnu: r-git2r: Update to 0.21.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.21.0.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus 9fb6e62ef5
gnu: r-openssl: Update to 1.0. 
* gnu/packages/statistics.scm (r-openssl): Update to 1.0.
 2018-02-13 16:18:44 +01:00
Ricardo Wurmus 78e03a761c
gnu: r-xml2: Update to 1.2.0. 
* gnu/packages/statistics.scm (r-xml2): Update to 1.2.0.
[native-inputs]: Add pkg-config.
[propagated-inputs]: Remove r-bh.
[inputs]: Add zlib.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 2afbaab56c
gnu: r-chron: Update to 2.3-52. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-52.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 172b63e436
gnu: r-dbplyr: Update to 1.2.0. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.2.0.
[propagated-inputs]: Add r-tidyselect.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 59b62f197d
gnu: r-tibble: Update to 1.4.2. 
* gnu/packages/statistics.scm (r-tibble): Update to 1.4.2.
[propagated-inputs]: Add r-cli, r-crayon, and r-pillar; remove r-rcpp.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 7387d35228
gnu: r-rlang: Update to 0.1.6. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.1.6.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus c36ac74005
gnu: r-microbenchmark: Update to 1.4-4. 
* gnu/packages/statistics.scm (r-microbenchmark): Update to 1.4-4.
[propagated-inputs]: Remove r-ggplot2.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus ab3330e174
gnu: r-knitr: Update to 1.19. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.19.
[propagated-inputs]: Remove r-digest.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus d222070ad4
gnu: r-estimability: Update to 1.3. 
* gnu/packages/statistics.scm (r-estimability): Update to 1.3.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 71d2f03be3
gnu: r-digest: Update to 0.6.15. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.15.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus ff1197c86e
gnu: r-rpart: Update to 4.1-12. 
* gnu/packages/statistics.scm (r-rpart): Update to 4.1-12.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 6aa4be9c3c
gnu: r-mgcv: Update to 1.8-23. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-23.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 4c9264c1b9
gnu: r-mass: Update to 7.3-48. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-48.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus e30b878ec8
gnu: r-hexbin: Update to 1.27.2. 
* gnu/packages/statistics.scm (r-hexbin): Update to 1.27.2.
 2018-02-13 16:18:41 +01:00
Mark H Weaver a102d359a6
Merge branch 'master' into core-updates 2018-01-23 17:01:07 -05:00
Ricardo Wurmus 5f1bb222c9
gnu: Add r-catterplots. 
* gnu/packages/statistics.scm (r-catterplots): New variable.
 2018-01-21 14:18:09 +01:00
Efraim Flashner 23de2e1d5f
Merge remote-tracking branch 'origin/master' into core-updates 2017-12-31 14:10:25 +02:00
Tobias Geerinckx-Rice e9960d8cba
gnu, doc: Use HTTPS for cran.r-project.org home pages. 
* gnu/packages/bioinformatics.scm (r-sparql, r-acsnminer, r-gkmsvm)
(r-maldiquant, r-gprofiler)[home-page]: Use HTTPS.
* gnu/packages/cran.scm (r-colorspace, r-auc, r-calibrate, r-shape)
(r-compare, r-proxy, r-sp, r-rmtstat, r-lmtest, r-inline, r-bbmle)
(r-lpsolve, r-energy, r-suppdists, r-ksamples, r-cvst, r-drr, r-prodlim)
(r-ddalpha, r-rcpproll, r-ipred, r-psych, r-truncnorm, r-rsolnp, r-laeken)
(r-vcd, r-ica, r-scatterplot3d)[home-page]: Likewise.
* gnu/packages/machine-learning.scm (r-adaptivesparsity, r-kernlab)
[home-page]: Likewise.
* gnu/packages/maths.scm (r-quadprog, r-pracma)[home-page]: Likewise.
* gnu/packages/statistics.scm (r-boot, r-cluster, r-codetools, r-foreign)
(r-kernsmooth, r-nlme, r-mgcv, r-rpart, r-dichromat, r-estimability)
(r-pheatmap, r-labeling, r-magrittr, r-munsell, r-rcolorbrewer, r-sendmailr)
(r-gdtools, r-acepack, r-formula, r-locfit, r-chron, r-coda, r-backports)
(r-brew, r-commonmark, r-rstudioapi, r-plotrix, r-gridbase, r-bitops)
(r-catools, r-xnomial, r-lambda-r, r-whoreadsthis, r-futile-options)
(r-futile-logger, r-segmented, r-snow, r-iterators, r-foreach, r-doparallel)
(r-domc, r-irlba, r-registry, r-e1071, r-bigmemory-sri, r-r-methodss3)
(r-tidyselect, r-base64, r-runit, r-sfsmisc, r-gtools, r-gdata, r-gplots)
(r-ztable, r-vipor, r-sourcetools, r-statmod, r-compquadform, r-mixtools)
(r-fastica, r-diptest, r-modeltools, r-flexmix, r-deoptimr, r-pcapp)
(r-rrcov, r-fit-models, r-robust, r-trimcluster, r-fpc, r-fnn)
(r-modelmetrics, r-nloptr, r-lme4, r-tclust, r-lubridate)[home-page]:
Likewise.
* gnu/packages/web.scm (r-htmltools, r-hwriter, r-rjson, r-rook)[home-page]:
Likewise.
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Likewise.
 2017-12-24 16:12:13 +01:00
Leo Famulari f76fc96866
Merge branch 'master' into core-updates 2017-12-21 13:58:35 -05:00
Ricardo Wurmus aead9e1bc5
gnu: r-testthat: Update to 2.0.0. 
* gnu/packages/statistics.scm (r-testthat): Update to 2.0.0.
[propagated-inputs]: Add r-cli, r-rlang, and r-withr.
 2017-12-19 20:35:08 +01:00
Ricardo Wurmus f9f1291bc0
gnu: r-ade4: Update to 1.7-10. 
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-10.
[propagated-inputs]: Add r-mass.
 2017-12-19 20:35:07 +01:00
Ricardo Wurmus 83b0e1d53f
gnu: r-registry: Update to 0.5. 
* gnu/packages/statistics.scm (r-registry): Update to 0.5.
 2017-12-19 20:35:07 +01:00
Ricardo Wurmus d2dc69b8be
gnu: r-iterators: Update to 1.0.9. 
* gnu/packages/statistics.scm (r-iterators): Update to 1.0.9.
 2017-12-19 20:35:07 +01:00
Ricardo Wurmus 4a1945da16
gnu: r-segmented: Update to 0.5-3.0. 
* gnu/packages/statistics.scm (r-segmented): Update to 0.5-3.0.
 2017-12-19 20:35:06 +01:00
Ricardo Wurmus 0a1b447e2b
gnu: r-rprojroot: Update to 1.3-1. 
* gnu/packages/statistics.scm (r-rprojroot): Update to 1.3-1.
 2017-12-19 20:35:06 +01:00
Ricardo Wurmus 102a271870
gnu: r-rcpparmadillo: Update to 0.8.300.1.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.300.1.0.
 2017-12-19 20:35:06 +01:00
Ricardo Wurmus 0300cacae1
gnu: r-plotrix: Update to 3.7. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7.
 2017-12-19 20:35:06 +01:00
Ricardo Wurmus 004e108aad
gnu: r-git2r: Update to 0.20.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.20.0.
 2017-12-19 20:35:06 +01:00
Ricardo Wurmus 069e3b5c09
gnu: r-backports: Update to 1.1.2. 
* gnu/packages/statistics.scm (r-backports): Update to 1.1.2.
 2017-12-19 20:35:05 +01:00
Ricardo Wurmus 1028f9ef11
gnu: r-yaml: Update to 2.1.16. 
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.16.
 2017-12-19 20:35:05 +01:00
Ricardo Wurmus de3fd9253f
gnu: r-reshape2: Update to 1.4.3. 
* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.3.
 2017-12-19 20:35:05 +01:00
Ricardo Wurmus d0c1a402db
gnu: r-digest: Update to 0.6.13. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.13.
 2017-12-19 20:35:05 +01:00
Roel Janssen 28fc96cb1e
gnu: Update r-cowplot to 0.9.2. 
* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.2.
 2017-12-19 10:47:19 +01:00
Marius Bakke 32cd878be0
Merge branch 'master' into core-updates 2017-12-19 01:42:40 +01:00
Tobias Geerinckx-Rice 6bc862c100
gnu: r-foreach: Update to 1.4.4. 
* gnu/packages/statistics.scm (r-foreach): Update to 1.4.4
 2017-12-15 16:44:26 +01:00
Tobias Geerinckx-Rice a135b3ddfe
gnu: r-caret: Update to 6.0-78. 
* gnu/packages/statistics.scm (r-caret): Update to 6.0-78
 2017-12-14 00:18:16 +01:00
Tobias Geerinckx-Rice 5ac4bd9c0a
gnu: r-domc: Update to 1.3.5. 
* gnu/packages/statistics.scm (r-domc): Update to 1.3.5
 2017-12-14 00:18:15 +01:00
Christopher Baines 9cf5f134d5
gnu: Switch to using the version-major procedure. 
* gnu/packages/audio.scm (ardour)[arguments]: Switch to using version-major.
  (hmmer)[source]: Switch to using version-major.
  (pidgin)[native-search-paths]: Switch to using version-major.
  (r-minimal)[source]: Switch to using version-major.
 2017-12-11 19:12:33 +00:00
Marius Bakke 77181815ae
Merge branch 'master' into core-updates 2017-12-05 23:41:30 +01:00
Ricardo Wurmus f1b90a2b58
gnu: r-bigmemory: Update to 4.5.31. 
* gnu/packages/statistics.scm (r-bigmemory): Update to 4.5.31.
[propagated-inputs]: Remove r-r-utils.
 2017-11-30 17:28:27 +01:00
Ricardo Wurmus b50a4b1391
gnu: r-cowplot: Update to 0.9.1. 
* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.1.
[propagated-inputs]: Add r-scales.
 2017-11-30 17:28:27 +01:00
Ricardo Wurmus a3ae2fa537
gnu: r-rcppprogress: Update to 0.4. 
* gnu/packages/statistics.scm (r-rcppprogress): Update to 0.4.
[propagated-inputs]: Add r-devtools.
 2017-11-30 17:28:26 +01:00
Ricardo Wurmus 0382d37734
gnu: r-rmarkdown: Update to 1.8. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.8.
[propagated-inputs]: Remove r-catools; add r-mime and r-stringr.
 2017-11-30 17:28:26 +01:00
Ricardo Wurmus e35cac9581
gnu: r-batchjobs: Update to 1.7. 
* gnu/packages/statistics.scm (r-batchjobs): Update to 1.7.
[propagated-inputs]: Add r-backports, r-data-table, and r-stringi; remove
r-fail and r-stringr.
 2017-11-30 17:28:25 +01:00
Ricardo Wurmus 87313f64d9
gnu: r-stringi: Update to 1.1.6. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.6.
 2017-11-30 17:28:16 +01:00
Ricardo Wurmus 3e11bddcc7
gnu: r-devtools: Update to 1.13.4. 
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.4.
 2017-11-30 17:28:15 +01:00
Ricardo Wurmus 20b0f8a5ec
gnu: r-mclust: Update to 5.4. 
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.
 2017-11-30 17:28:15 +01:00
Ricardo Wurmus 6d4aed8d98
gnu: r-rcppeigen: Update to 0.3.3.3.1. 
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.1.
 2017-11-30 17:28:14 +01:00
Ricardo Wurmus a0a3184925
gnu: r-car: Update to 2.1-6. 
* gnu/packages/statistics.scm (r-car): Update to 2.1-6.
 2017-11-30 17:28:14 +01:00
Ricardo Wurmus c8fb593502
gnu: r-sn: Update to 1.5-1. 
* gnu/packages/statistics.scm (r-sn): Update to 1.5-1.
 2017-11-30 17:28:13 +01:00
Ricardo Wurmus b796f9e6be
gnu: r-openssl: Update to 0.9.9. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.9.
 2017-11-30 17:28:13 +01:00
Ricardo Wurmus 09c0107f75
gnu: r-hms: Update to 0.4.0. 
* gnu/packages/statistics.scm (r-hms): Update to 0.4.0.
[propagated-inputs]: Add r-rlang and r-pkgconfig.
 2017-11-30 17:28:12 +01:00
Roel Janssen 8937abefb2
gnu: Update r-matrix to 1.2-12. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-12.
 2017-11-30 12:52:25 +01:00
Roel Janssen c71558ffed
gnu: Update r-cluster to 2.0.6. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.6.
 2017-11-30 12:51:54 +01:00
Roel Janssen cbe1314a7e
gnu: Update r-minimal to 3.4.3. 
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.3.
 2017-11-30 12:50:23 +01:00
Marius Bakke 2dd12924cf
Merge branch 'master' into core-updates 2017-11-19 15:01:00 +01:00
Ricardo Wurmus 33dc54b08c
gnu: Move date/time packages from python.scm to time.scm. 
* gnu/packages/python.scm (python-pytz, python2-pytz, python-dateutil,
python2-dateutil, python-parsedatetime, python2-parsedatetime,
python-tzlocal, python-isodate, python2-isodate, python-iso8601,
python2-iso8601, python-monotonic, python2-monotonic, python-pyrfc3339,
python2-pyrfc3339, python-arrow, python2-arrow, python-aniso8601,
python2-aniso8601): Move from here...
* gnu/packages/time.scm: ...to here.
* gnu/packages/calendar.scm,
gnu/packages/check.scm,
gnu/packages/django.scm,
gnu/packages/ebook.scm,
gnu/packages/gnome.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/mail.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/rdf.scm,
gnu/packages/statistics.scm,
gnu/packages/tls.scm,
gnu/packages/tryton.scm,
gnu/packages/version-control.scm: Adjust accordingly.
 2017-11-18 12:45:19 +01:00
Ricardo Wurmus 9ef9c6489f
gnu: Remove duplicates from (gnu packages statistics). 
* gnu/packages/statistics.scm (r-cluster, r-codetools, r-kernsmooth): Remove
duplicates.
 2017-11-18 11:18:39 +01:00
Ricardo Wurmus ac257f127a
gnu: Move testing packages from python.scm to check.scm. 
* gnu/packages/python.scm (python-behave-web-api, python2-behave-web-api,
python-mock, python2-mock, python-mock-2, python-nose, python2-nose,
python-nose2, python2-nose2, python-unittest2, python2-unittest2,
python-pytest, python2-pytest, python-pytest-3.0, python2-pytest-3.0,
python-pytest-cov, python2-pytest-cov, python-pytest-runner,
python2-pytest-runner, python-pytest-mock, python2-pytest-mock,
python-pytest-xdist, python2-pytest-xdist, python-scripttest,
python2-scripttest, python-testtools, python2-testtools, python-testscenarios,
python2-testscenarios, python-testresources, python2-testresources,
python-subunit, python2-subunit, python-fixtures, python2-fixtures,
python-testrepository, python2-testrepository, python-coverage,
python2-coverage, python-cov-core, python2-cov-core, python-testpath,
python2-testpath, python-testlib, python2-testlib, python-pytest-cache,
python2-pytest-cache, python-pytest-localserver, python-pytest-xprocess,
python-pytest-subtesthack, python2-pytest-subtesthack, python-hypothesis,
python2-hypothesis, python-lit, python2-lit, python-pytest-pep8,
python2-pytest-pep8, python-pytest-flakes, python2-pytest-flakes,
python2-coverage-test-runner, python-pylint, python2-pylint,
python-paramunittest, python2-python-paramunittest, python-pytest-warnings,
python2-pytest-warnings, python-pytest-capturelog, python2-pytest-capturelog,
python-pytest-catchlog, python2-pytest-catchlog, python-nosexcover,
python2-nosexcover, python-discover, python2-discover, behave, python-rednose,
python2-rednose, python-nose-randomly, python2-nose-randomly,
python-nose-timer, python2-nose-timer): Move from here...
* gnu/packages/check.scm: ...to here.
* gnu/packages/admin.scm,
gnu/packages/android.scm,
gnu/packages/backup.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/calendar.scm,
gnu/packages/dav.scm,
gnu/packages/django.scm,
gnu/packages/freedesktop.scm,
gnu/packages/haskell.scm,
gnu/packages/image.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/ldc.scm,
gnu/packages/libffi.scm,
gnu/packages/mail.scm,
gnu/packages/mpd.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/password-utils.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/rdf.scm,
gnu/packages/statistics.scm,
gnu/packages/storage.scm,
gnu/packages/time.scm,
gnu/packages/tls.scm,
gnu/packages/tor.scm,
gnu/packages/tryton.scm: Adjust accordingly.
 2017-11-17 22:36:26 +01:00
Kyle Meyer e99f045cc8
gnu: Add r-directlabels. 
* gnu/packages/statistics.scm (r-directlabels): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-11-09 23:54:48 +01:00
Ricardo Wurmus 2e648d2bc4
gnu: r-prabclus: Update description. 
* gnu/packages/statistics.scm (r-prabclus)[description]: Fix grammar errors.
 2017-11-07 23:32:46 +01:00
Ricardo Wurmus 14e5f6b20a
gnu: r-fdrtool: Update description. 
* gnu/packages/statistics.scm (r-fdrtool)[description]: Use "@dfn" syntax.
 2017-11-07 23:32:46 +01:00
Ricardo Wurmus 60ec9da3aa
gnu: r-tidyselect: Update to 0.2.3. 
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.3.
 2017-11-07 08:15:44 +01:00
Ricardo Wurmus 65a8cd6676
gnu: r-lubridate: Update to 1.7.1. 
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.1.
[propagated-inputs]: Add r-rcpp.
 2017-11-07 08:15:41 +01:00
Ricardo Wurmus 689edf1153
gnu: r-preprocesscore: Update to 1.40.0. 
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.40.0.
 2017-11-07 08:15:41 +01:00
Ricardo Wurmus e7f680f071
gnu: r-r-utils: Update to 2.6.0. 
* gnu/packages/statistics.scm (r-r-utils): Update to 2.6.0.
 2017-11-07 08:15:41 +01:00
Ricardo Wurmus ecfe98a17a
gnu: r-openssl: Update to 0.9.8. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.8.
 2017-11-07 08:15:40 +01:00
Ricardo Wurmus aced057fbc
gnu: r-rlang: Update to 0.1.4. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.1.4.
 2017-11-07 08:15:40 +01:00
Leo Famulari f9c3bd2e01
gnu: Generalize the variable name of the test-only tzdata package. 
* gnu/packages/base.scm (tzdata-2017a): Rename variable to tzdata-for-tests.
* gnu/packages/calcurse.scm (calcurse)[native-inputs, arguments]: Adjust
accordingly.
gnu/packages/glib.scm (glib): Likewise.
* gnu/packages/perl.scm (perl-libtime-parsedate): Adjust accordingly and
add tzdata-for-tests #:disallowed-references.
* gnu/packages/statistics.scm (r-minimal): Adjust accordingly.
 2017-11-04 10:32:30 -04:00
Ricardo Wurmus a6ec5b7043
gnu: r-withr: Update to 2.1.0. 
* gnu/packages/statistics.scm (r-withr): Update to 2.1.0.
[propagated-inputs]: Add r-lattice.
 2017-11-03 14:14:37 +01:00
Ricardo Wurmus fd9afcf4ea
gnu: r-quantreg: Update to 5.34. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.34.
 2017-11-03 14:14:37 +01:00
Ricardo Wurmus 1fe75660c0
gnu: r-robustbase: Update to 0.92-8. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.92-8.
 2017-11-03 14:14:37 +01:00
Ricardo Wurmus 1fb415cb50
gnu: r-purrr: Update to 0.2.4. 
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.4.
 2017-11-03 14:14:37 +01:00
Ricardo Wurmus c8818f5577
gnu: r-irlba: Update to 2.3.1. 
* gnu/packages/statistics.scm (r-irlba): Update to 2.3.1.
 2017-11-03 14:14:37 +01:00
Ricardo Wurmus 116e9837b5
gnu: r-checkmate: Update to 1.8.5. 
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.5.
 2017-11-03 14:14:36 +01:00
Ricardo Wurmus fde66e3018
gnu: r-multitaper: Update to 1.0-14. 
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-14.
 2017-11-03 14:14:36 +01:00
Ricardo Wurmus 0a123e0609
gnu: r-data-table: Update to 1.10.4-3. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4-3.
 2017-11-03 14:14:36 +01:00
Ricardo Wurmus b5a2f37157
gnu: r-pryr: Update to 0.1.3 
* gnu/packages/statistics.scm (r-pryr): Update to 0.1.3.
 2017-11-03 14:14:36 +01:00
Ricardo Wurmus bc409c8d3b
gnu: r-lazyeval: Update to 0.2.1. 
* gnu/packages/statistics.scm (r-lazyeval): Update to 0.2.1.
 2017-11-03 14:14:36 +01:00
Ricardo Wurmus 1f6f4c40c1
gnu: Add r-tgconfig. 
* gnu/packages/statistics.scm (r-tgconfig): New variable.
 2017-10-30 12:07:53 +01:00
Ricardo Wurmus 7941d1ed5d
gnu: Add r-tgstat. 
* gnu/packages/statistics.scm (r-tgstat): New variable.
 2017-10-30 12:07:51 +01:00
Efraim Flashner 8ba3f751b6
gnu: r-nloptr: Update package hash. 
The source was repacked and reuploaded without incrementing the version
number. The difference was windows line endings on the windows files.

* gnu/packages/statistics.scm (r-nloptr)[source]: Update package hash.
 2017-10-26 10:46:02 +03:00
Kyle Meyer 4c77abc4da
gnu: Add r-forcats. 
* gnu/packages/statistics.scm (r-forcats): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-25 16:24:03 +02:00
Tobias Geerinckx-Rice 5713bbf157
Use HTTPS for bioconductor.org. 
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for
bioconductor.org URLs.
* gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter)
(r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category)
(r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews)
(r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata)
(r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi)
(r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray)
(r-summarizedexperiment, r-genomicalignments, r-rtracklayer)
(r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern)
(r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport)
(r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid)
(r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)
(r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db)
(r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db)
(r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9)
(r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene)
(r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10)
(r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]:
Likewise.
* gnu/packages/statistics.scm (r-rcurl)[source]: Likewise.
* guix/build-system/r.scm (bioconductor-uri): Likewise.
* guix/import/cran.scm (%cran-url, bioconductor-package?)
(bioconductor-data-package?, bioconductor-experiment-package?): Likewise.
 2017-10-21 17:43:40 +02:00
Ricardo Wurmus e059bdc9a7
gnu: r-tidyr: Update to 0.7.2. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.2.
 2017-10-17 20:58:24 +02:00
Ricardo Wurmus d8455fe146
gnu: r-tidyselect: Update to 0.2.2. 
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.2.
 2017-10-17 20:58:24 +02:00
Ricardo Wurmus c43db8da3a
gnu: r-rcpparmadillo: Update to 0.8.100.1.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.100.1.0.
[native-inputs]: Add r-knitr.
 2017-10-17 20:58:24 +02:00
Ricardo Wurmus 711e6cc5f4
gnu: r-data-table: Update to 1.10.4-2. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4-2.
 2017-10-17 20:58:23 +02:00
Ricardo Wurmus 767ad2f7ad
gnu: r-chron: Update to 2.3-51. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-51.
 2017-10-17 20:58:23 +02:00
Ricardo Wurmus dc6cb56dec
gnu: r-dplyr: Update to 0.7.4. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.4.
 2017-10-17 20:58:23 +02:00
Roel Janssen 6de897ac5a
gnu: Add r-ggdendro. 
* gnu/packages/statistics.scm (r-ggdendro): New variable.
 2017-10-11 10:02:08 +02:00
Ricardo Wurmus 6048986c89
gnu: r-lme4: Update to 1.1-14. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-14.
 2017-09-28 22:00:44 +02:00
Ricardo Wurmus 26cd4194ef
gnu: r-doparallel: Update to 1.0.11. 
* gnu/packages/statistics.scm (r-doparallel): Update to 1.0.11.
 2017-09-28 22:00:44 +02:00
Ricardo Wurmus 7147d8f7ad
gnu: r-checkmate: Update to 1.8.4. 
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.4.
 2017-09-28 22:00:44 +02:00
Ricardo Wurmus 2c49184e2c
gnu: r-backports: Update to 1.1.1. 
* gnu/packages/statistics.scm (r-backports): Update to 1.1.1.
 2017-09-28 22:00:43 +02:00
Ricardo Wurmus 1344deb937
gnu: r-minimal: Update to 3.4.2. 
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.2.
 2017-09-28 20:21:18 +02:00
Ricardo Wurmus 91316f31d4
gnu: r-glmnet: Update to 2.0-13. 
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-13.
 2017-09-24 11:36:17 +02:00
Ricardo Wurmus d9400ee46a
gnu: r-segmented: Update to 0.5-2.2. 
* gnu/packages/statistics.scm (r-segmented): Update to 0.5-2.2.
 2017-09-24 11:36:17 +02:00
Ricardo Wurmus 29457c43bf
gnu: r-mgcv: Update to 1.8-22. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-22.
 2017-09-24 11:36:17 +02:00
Ricardo Wurmus 2c67f96b1b
gnu: r-glmnet: Update to 2.0-12. 
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-12.
 2017-09-18 14:23:03 +02:00
Ricardo Wurmus 0b2fc9836b
gnu: r-lambda-r: Update to 1.2. 
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.
 2017-09-18 14:23:03 +02:00
Ricardo Wurmus 9f14fffea6
gnu: r-gridextra: Update to 2.3. 
* gnu/packages/statistics.scm (r-gridextra): Update to 2.3.
 2017-09-18 14:23:02 +02:00
Ricardo Wurmus 37c6a738f3
gnu: r-dplyr: Update to 0.7.3. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.3.
 2017-09-18 14:23:02 +02:00
Ricardo Wurmus b0c8cba485
gnu: r-crayon: Update to 1.3.4. 
* gnu/packages/statistics.scm (r-crayon): Update to 1.3.4.
 2017-09-18 14:23:02 +02:00
Ricardo Wurmus ea008095c3
gnu: r-svglite: Update to 1.2.1. 
* gnu/packages/statistics.scm (r-svglite): Update to 1.2.1.
 2017-09-18 14:23:02 +02:00
Ricardo Wurmus 7904531e5b
gnu: r-mgcv: Update to 1.8-21. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-21.
 2017-09-18 14:23:02 +02:00
Ricardo Wurmus d9c65e5a9c
gnu: r-caret: Update to 6.0-77. 
* gnu/packages/statistics.scm (r-caret): Update to 6.0-77.
[propagated-inputs]: Remove r-car; add r-recipes and r-withr.
 2017-09-18 11:33:26 +02:00
Ricardo Wurmus 9272144a88
gnu: r-rstudioapi: Update to 0.7. 
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.7.
 2017-09-18 11:33:26 +02:00
Ricardo Wurmus 0dc3b4d41e
gnu: r-openssl: Update to 0.9.7. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.7.
[inputs]: Replace openssl with libressl.
 2017-09-18 11:33:25 +02:00
Ricardo Wurmus 8036caa75a
gnu: r-tidyr: Update to 0.7.1. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.1.
 2017-09-05 16:59:46 +02:00
Ricardo Wurmus 31b7f0c0fc
gnu: r-gdtools: Update to 0.1.6. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.6.
 2017-09-05 16:59:45 +02:00
Ricardo Wurmus ebbb6301a3
gnu: r-minimal: Update to 3.4.1. 
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.1.
 2017-09-01 22:05:39 +02:00
Ricardo Wurmus 89b620e7ee
gnu: r-tidyr: Update to 0.7.0. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.0.
[propagated-inputs]: Remove r-lazyeval; add r-glue, r-purrr, r-rlang, and
r-tidyselect.
 2017-09-01 15:11:58 +02:00
Ricardo Wurmus c4a4ef39ed
gnu: Add r-tidyselect. 
* gnu/packages/statistics.scm (r-tidyselect): New variable.
 2017-09-01 15:11:58 +02:00
Ricardo Wurmus 9077f6d9aa
gnu: r-tclust: Update to 1.3-1. 
* gnu/packages/statistics.scm (r-tclust): Update to 1.3-1.
 2017-09-01 15:11:53 +02:00
Ricardo Wurmus 347cab66b6
gnu: r-fastcluster: Update to 1.1.24. 
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.24.
 2017-09-01 15:11:52 +02:00
Ricardo Wurmus d574d6bcc2
gnu: r-rcpparmadillo: Update to 0.7.960.1.2. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.960.1.2.
 2017-09-01 15:11:52 +02:00
Ricardo Wurmus 2dda8fca6f
gnu: r-plotrix: Update to 3.6-6. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-6.
 2017-09-01 15:11:51 +02:00
Ricardo Wurmus 7d60652ebe
gnu: r-httr: Update to 1.3.1. 
* gnu/packages/statistics.scm (r-httr): Update to 1.3.1.
[propagated-inputs]: Remove r-digest and r-stringr.
 2017-09-01 15:11:51 +02:00
Ricardo Wurmus e3323e0707
gnu: r-commonmark: Update to 1.4. 
* gnu/packages/statistics.scm (r-commonmark): Update to 1.4.
 2017-09-01 15:11:51 +02:00
Ricardo Wurmus 5d84369bda
gnu: r-ade4: Update to 1.7-8. 
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-8.
 2017-09-01 15:11:50 +02:00
Ricardo Wurmus fb10c923b3
gnu: r-tibble: Update to 1.3.4. 
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.4.
 2017-09-01 15:11:50 +02:00
Ricardo Wurmus edd5fd7208
gnu: r-rlang: Update to 0.1.2. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.1.2.
 2017-09-01 15:11:49 +02:00
Ricardo Wurmus 5a00ef0950
gnu: r-knitr: Update to 1.17. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.17.
 2017-09-01 15:11:49 +02:00
Ricardo Wurmus 3949aef601
gnu: r-bh: Update to 1.65.0-1. 
* gnu/packages/statistics.scm (r-bh): Update to 1.65.0-1.
 2017-09-01 15:11:49 +02:00
Ricardo Wurmus b93881b9c5
gnu: r-scales: Update to 0.5.0. 
* gnu/packages/statistics.scm (r-scales): Update to 0.5.0.
[propagated-inputs]: Add r-r6 and r-viridislite.
 2017-09-01 15:11:48 +02:00
Ricardo Wurmus 2d99a31607
gnu: r-mgcv: Update to 1.8-19. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-19.
 2017-09-01 15:11:48 +02:00
Ricardo Wurmus fefe9f4753
gnu: r-matrix: Update to 1.2-11. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-11.
 2017-09-01 15:11:48 +02:00
Ricardo Wurmus caa4e796e4
gnu: Add r-dbplyr. 
* gnu/packages/statistics.scm (r-dbplyr): New variable.
 2017-08-31 18:24:51 +02:00
Ricardo Wurmus 174fbd5f3b
gnu: r-minimal: Remove timestamp from man page. 
* gnu/packages/statistics.scm (r-minimal)[arguments]: Adjust
"build-reproducibly" phase to prevent the bundled help2man script from
printing the current month and year.
 2017-08-28 15:51:05 +02:00
Efraim Flashner af9bb4cab8
gnu: pspp: Update to 1.0.1. 
* gnu/packages/statistics.scm (pspp): Update to 1.0.1.
 2017-08-28 14:44:41 +03:00
Ricardo Wurmus bd3a184613
gnu: r-minimal: Do not compress serialized files. 
* gnu/packages/statistics.scm (r-minimal)[arguments]: Replace build phase
"patch-which" with "do-not-compress-serialized-files".
[propagated-inputs]: Move "which" from here...
[inputs]: ...to here.

Fixes <https://bugs.gnu.org/28157>.
 2017-08-22 16:24:24 +02:00
Ricardo Wurmus 6be54a8751
gnu: Add rmath-standalone. 
* gnu/packages/statistics.scm (rmath-standalone): New variable.
 2017-08-22 16:24:24 +02:00
Efraim Flashner bda6c35093
gnu: pspp: Update to 1.0.0. 
* gnu/packages/statistics.scm (pspp): Update to 1.0.0.
 2017-08-20 21:44:47 +03:00
Ricardo Wurmus a8cd352304
gnu: r-minimal: Work around failure to embed reference to "which". 
* gnu/packages/statistics.scm (r-minimal)[arguments]: Add phase "patch-which".
[native-inputs]: Move "which" from here...
[propagated-inputs]: ...to here.
 2017-08-20 14:00:04 +02:00
Ricardo Wurmus 97cb349dc1
gnu: r-trimcluster: Update license. 
* gnu/packages/statistics.scm (r-trimcluster)[license]: Also specify GPLv3+.
 2017-08-17 17:26:11 +02:00
Efraim Flashner adcb30642c
gnu: pspp: Update to 0.11.0. 
This fixes CVE-2017-10791, CVE-2017-10792.

* gnu/packages/statistics.scm (pspp): Update to 0.11.0.
 2017-08-16 17:57:40 +03:00
Efraim Flashner 2d430f2923
Revert "gnu: pspp: Update to 0.11.0." 
This FTBFS on x86_64 and i686.

This reverts commit f4c808df5b.
 2017-08-15 10:03:40 +03:00
Efraim Flashner f4c808df5b
gnu: pspp: Update to 0.11.0. 
This fixes CVE-2017-10791, CVE-2017-10792.

* gnu/packages/statistics.scm (pspp): Update to 0.11.0.
 2017-08-13 10:16:17 +03:00
Ricardo Wurmus c5f744a68d
gnu: Add r-robust. 
* gnu/packages/statistics.scm (r-robust): New variable.
 2017-08-09 20:08:13 +02:00
Ricardo Wurmus 5d0afe8849
gnu: Add r-fit-models. 
* gnu/packages/statistics.scm (r-fit-models): New variable.
 2017-08-09 20:08:13 +02:00
Ricardo Wurmus 0bae5fd6a7
gnu: Add r-rrcov. 
* gnu/packages/statistics.scm (r-rrcov): New variable.
 2017-08-09 20:08:13 +02:00
Ricardo Wurmus 23841b2573
gnu: Add r-pcapp. 
* gnu/packages/statistics.scm (r-pcapp): New variable.
 2017-08-09 20:08:13 +02:00
Ricardo Wurmus 0ecd065839
gnu: r-gdtools: Update to 0.1.5. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.5.
 2017-08-09 20:08:12 +02:00
Ricardo Wurmus c3317cd9fb
gnu: r-ggbeeswarm: Update to 0.6.0. 
* gnu/packages/statistics.scm (r-ggbeeswarm): Update to 0.6.0.
 2017-08-09 20:08:12 +02:00
Ricardo Wurmus 1738138cb3
gnu: r-igraph: Move to (gnu packages graph). 
* gnu/packages/statistics.scm (r-igraph): Move from here...
* gnu/packages/graph.scm (r-igraph): ...to here.
 2017-08-09 14:47:47 +02:00
Ricardo Wurmus 2267e4d3f6
gnu: r-purrr: Update to 0.2.3. 
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.3.
[propagated-inputs]: Remove r-rcpp and r-lazyeval; add r-rlang.
 2017-08-03 17:53:55 +02:00
Ricardo Wurmus ceb802a31c
gnu: r-desc: Update to 1.1.1. 
* gnu/packages/statistics.scm (r-desc): Update to 1.1.1.
 2017-08-03 17:53:55 +02:00
Ricardo Wurmus 85cd755417
gnu: r-tclust: Update to 1.2-7. 
* gnu/packages/statistics.scm (r-tclust): Update to 1.2-7.
 2017-08-03 17:53:53 +02:00
Ricardo Wurmus 6bb4bfa4bc
gnu: r-car: Update to 2.1-5. 
* gnu/packages/statistics.scm (r-car): Update to 2.1-5.
 2017-08-03 17:53:53 +02:00
Ricardo Wurmus 0f008abe7a
gnu: r-rcppeigen: Update to 0.3.3.3.0. 
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.0.
 2017-08-03 17:53:53 +02:00
Ricardo Wurmus 12c3bbb662
gnu: r-pbapply: Update to 1.3-3. 
* gnu/packages/statistics.scm (r-pbapply): Update to 1.3-3.
 2017-08-03 17:53:52 +02:00
Ricardo Wurmus 4431dd3a4e
gnu: r-vgam: Update to 1.0-4. 
* gnu/packages/statistics.scm (r-vgam): Update to 1.0-4.
 2017-08-03 17:53:52 +02:00
Ricardo Wurmus 41692b2963
gnu: r-mclust: Update to 5.3. 
* gnu/packages/statistics.scm (r-mclust): Update to 5.3.
 2017-08-03 17:53:52 +02:00