f347c24acc
gnu: freeimage: Use bundled libjxr.
...
* gnu/packages/image.scm (freeimage)[source]: Don't delete bundled
LibJXR directory.
[arguments]: Modify make-flags to not include external jxrlib.
[inputs]: Remove libjxr.
* gnu/packages/patches/freeimage-unbundle.patch: Modify to not unbundle
libjxr.
2018-04-22 12:20:15 +03:00
e33498b868
gnu: cran.scm: Add missing module.
...
This is a follow-up to 9ebfdcd36c
2018-04-22 09:43:36 +03:00
2cf42ec611
gnu: r-httpuv: Update to 1.4.1.
...
* gnu/packages/web.scm (r-httpuv): Update to 1.4.1.
2018-04-21 23:07:52 +02:00
c36ce47635
gnu: r-seurat: Update to 2.3.0.
...
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.0.
[propagated-inputs]: Add r-cluster, r-dosnow, r-fitdistrplus, r-foreach,
r-lmtest, r-png, and r-rann.
2018-04-21 23:07:52 +02:00
3cf9ae2f75
gnu: Add r-dosnow.
...
* gnu/packages/cran.scm (r-dosnow): New variable.
2018-04-21 23:07:52 +02:00
6ab97ed56a
gnu: r-lambda-r: Update to 1.2.2.
...
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.2.
[arguments]: Remove.
[native-inputs]: Remove.
[propagated-inputs]: Add r-formatr.
2018-04-21 23:07:52 +02:00
5150a52d03
gnu: r-httpuv: Update to 1.4.0.
...
* gnu/packages/web.scm (r-httpuv): Update to 1.4.0.
[propagated-inputs]: Add r-bh, r-later, and r-promises.
2018-04-21 23:07:52 +02:00
d9d66ba963
gnu: Add r-promises.
...
* gnu/packages/cran.scm (r-promises): New variable.
2018-04-21 23:07:52 +02:00
284179bbb3
gnu: Add r-later.
...
* gnu/packages/cran.scm (r-later): New variable.
2018-04-21 23:07:52 +02:00
500224cb4c
gnu: r-car: Update to 3.0-0.
...
* gnu/packages/statistics.scm (r-car): Update to 3.0-0.
[propagated-inputs]: Add r-abind, r-cardata, r-lme4, r-maptools, r-nlme, and
r-rio.
2018-04-21 23:07:52 +02:00
08dac3d9e6
gnu: Add r-maptools.
...
* gnu/packages/cran.scm (r-maptools): New variable.
2018-04-21 23:07:52 +02:00
c9920f2597
gnu: Add r-rio.
...
* gnu/packages/cran.scm (r-rio): New variable.
2018-04-21 23:07:52 +02:00
4b1f7a3e90
gnu: Add r-openxlsx.
...
* gnu/packages/cran.scm (r-openxlsx): New variable.
2018-04-21 23:07:52 +02:00
0edd2fd186
gnu: r-ggridges: Update to 0.5.0.
...
* gnu/packages/cran.scm (r-ggridges): Update to 0.5.0.
[propagated-inputs]: Add r-withr.
2018-04-21 23:07:52 +02:00
4f18423358
gnu: r-ddalpha: Update to 1.3.2.
...
* gnu/packages/cran.scm (r-ddalpha): Update to 1.3.2.
[propagated-inputs]: Add r-geometry.
2018-04-21 23:07:52 +02:00
9604429d7b
gnu: Add r-geometry.
...
* gnu/packages/cran.scm (r-geometry): New variable.
2018-04-21 23:07:52 +02:00
ce4e81cb86
gnu: Add r-magic.
...
* gnu/packages/cran.scm (r-magic): New variable.
2018-04-21 23:07:52 +02:00
f1c7a24280
gnu: Add r-cardata.
...
* gnu/packages/statistics.scm (r-cardata): New variable.
2018-04-21 23:07:52 +02:00
2acc0e5f8f
gnu: r-gsubfn: Update to 0.7.
...
* gnu/packages/cran.scm (r-gsubfn): Update to 0.7.
2018-04-21 23:07:52 +02:00
7bd6ecd7fa
gnu: r-psych: Update to 1.8.3.3.
...
* gnu/packages/cran.scm (r-psych): Update to 1.8.3.3.
2018-04-21 23:07:52 +02:00
d087f47d61
gnu: r-quantmod: Update to 0.4-13.
...
* gnu/packages/cran.scm (r-quantmod): Update to 0.4-13.
2018-04-21 23:07:52 +02:00
cb9f404187
gnu: r-tinytex: Update to 0.5.
...
* gnu/packages/cran.scm (r-tinytex): Update to 0.5.
2018-04-21 23:07:52 +02:00
1d310349bb
gnu: r-xts: Update to 0.10-2.
...
* gnu/packages/cran.scm (r-xts): Update to 0.10-2.
2018-04-21 23:07:52 +02:00
2ab8cbcd1f
gnu: r-stringdist: Update to 0.9.4.7.
...
* gnu/packages/cran.scm (r-stringdist): Update to 0.9.4.7.
2018-04-21 23:07:52 +02:00
9ee81a36aa
gnu: r-prodlim: Update to 2018.04.18.
...
* gnu/packages/cran.scm (r-prodlim): Update to 2018.04.18.
2018-04-21 23:07:52 +02:00
3e00e3a885
gnu: r-lava: Update to 1.6.1.
...
* gnu/packages/cran.scm (r-lava): Update to 1.6.1.
2018-04-21 23:07:52 +02:00
9ebfdcd36c
gnu: r-rmpi: Update to 0.6-7.
...
* gnu/packages/cran.scm (r-rmpi): Update to 0.6-7.
[native-inputs]: Add pkg-config.
2018-04-21 23:07:52 +02:00
cf0da489ff
gnu: r-globaloptions: Update to 0.0.13.
...
* gnu/packages/cran.scm (r-globaloptions): Update to 0.0.13.
2018-04-21 23:07:52 +02:00
9f17c0560f
gnu: r-bindrcpp: Update to 0.2.2.
...
* gnu/packages/cran.scm (r-bindrcpp): Update to 0.2.2.
2018-04-21 23:07:52 +02:00
eb575e95fb
gnu: r-bindr: Update to 0.1.1.
...
* gnu/packages/cran.scm (r-bindr): Update to 0.1.1.
2018-04-21 23:07:52 +02:00
dfd7299957
gnu: r-rcpp: Update to 0.12.16.
...
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.16.
2018-04-21 23:07:52 +02:00
0e94780446
gnu: r-plogr: Update to 0.2.0.
...
* gnu/packages/cran.scm (r-plogr): Update to 0.2.0.
2018-04-21 23:07:52 +02:00
1d612cefc8
gnu: r-readxl: Update to 1.1.0.
...
* gnu/packages/cran.scm (r-readxl): Update to 1.1.0.
2018-04-21 23:07:52 +02:00
41e8bd77f3
gnu: r-selectr: Update to 0.4-1.
...
* gnu/packages/cran.scm (r-selectr): Update to 0.4-1.
[propagated-inputs]: Add r-r6.
2018-04-21 23:07:52 +02:00
aeca5f0c5b
gnu: r-scran: Update to 1.6.9.
...
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.6.9.
2018-04-21 23:07:52 +02:00
80323c3c13
gnu: r-hitc: Update to 1.22.1.
...
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.22.1.
2018-04-21 23:07:52 +02:00
b6d7deca55
gnu: r-ldblock: Update to 1.8.1.
...
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.8.1.
2018-04-21 23:07:52 +02:00
fb1dcfac46
gnu: r-erma: Update to 0.10.1.
...
* gnu/packages/bioinformatics.scm (r-erma): Update to 0.10.1.
2018-04-21 23:07:52 +02:00
8defca1d94
gnu: r-gprofiler: Update to 0.6.6.
...
* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.6.
2018-04-21 23:07:52 +02:00
fc6d3e2606
gnu: r-ggbio: Update to 1.26.1.
...
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.26.1.
2018-04-21 23:07:52 +02:00
0bd5c7b859
gnu: r-genomicalignments: Update to 1.14.2.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.14.2.
2018-04-21 23:07:52 +02:00
4207770218
gnu: r-dexseq: Update to 1.24.4.
...
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.4.
2018-04-21 23:07:52 +02:00
3db5d04ccc
gnu: r-vegan: Update to 2.5-1.
...
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.5-1.
[propagated-inputs]: Add r-knitr.
2018-04-21 23:07:52 +02:00
2ef5ab8749
gnu: r-mapproj: Update to 1.2.6.
...
* gnu/packages/geo.scm (r-mapproj): Update to 1.2.6.
2018-04-21 23:07:52 +02:00
5895f238d7
gnu: r-maps: Update to 3.3.0.
...
* gnu/packages/geo.scm (r-maps): Update to 3.3.0.
2018-04-21 23:07:52 +02:00
8cf7b28ffe
gnu: r-igraph: Update to 1.2.1.
...
* gnu/packages/graph.scm (r-igraph): Update to 1.2.1.
[inputs]: Add glpk and zlib.
[propagated-inputs]: Remove r-irlba.
2018-04-21 23:07:52 +02:00
2bcf5fd337
gnu: r-subplex: Update to 1.5-4.
...
* gnu/packages/maths.scm (r-subplex): Update to 1.5-4.
2018-04-21 23:07:52 +02:00
61c868e1f5
gnu: r-shinydashboard: Update to 0.7.0.
...
* gnu/packages/web.scm (r-shinydashboard): Update to 0.7.0.
2018-04-21 23:07:52 +02:00
4fe0efddfe
gnu: r-htmlwidgets: Update to 1.2.
...
* gnu/packages/web.scm (r-htmlwidgets): Update to 1.2.
2018-04-21 23:07:52 +02:00
75a40e89d9
gnu: r-lme4: Update to 1.1-17.
...
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-17.
2018-04-21 23:07:52 +02:00
30d76d442a
gnu: r-futile-options: Update to 1.0.1.
...
* gnu/packages/statistics.scm (r-futile-options): Update to 1.0.1.
2018-04-21 23:07:52 +02:00
4184649940
gnu: r-xml: Update to .
...
* gnu/packages/statistics.scm (r-xml): Update to .
2018-04-21 23:07:52 +02:00
ff91ed7d56
gnu: r-rsqlite: Update to 2.1.0.
...
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.1.0.
2018-04-21 23:07:52 +02:00
1aa2ad5b32
gnu: r-survival: Update to 2.42-3.
...
* gnu/packages/statistics.scm (r-survival): Update to 2.42-3.
2018-04-21 23:07:52 +02:00
6fa9cf1abb
gnu: r-nlme: Update to 3.1-137.
...
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-137.
2018-04-21 23:07:52 +02:00
ac6672d539
gnu: r-cluster: Update to 2.0.7-1.
...
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.7-1.
2018-04-21 23:07:52 +02:00
c43ea99b39
gnu: r-minimal: Update to 3.4.4.
...
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.4.
2018-04-21 23:07:52 +02:00
785f40dfbc
gnu: spindle: Limit supported systems.
...
* gnu/packages/admin.scm (spindle)[supported-system]: New field.
2018-04-21 23:25:42 +03:00
c80629e7c2
gnu: freefall: Fix compilation error.
...
* gnu/packages/linux.scm (freefall)[arguments]: Add make-flag to set
CC=gcc.
2018-04-21 23:04:25 +03:00
841f833171
gnu: python-onetimepass: Make python-six a propagated input.
...
* gnu/packages/python.scm (python-onetimepass)[inputs]: Move python-six from
here...
[propagated-inputs]: ...to here.
2018-04-21 17:37:12 +02:00
0ccb104354
gnu: go-github-com-vitrun-qart-qr: Remove duplicate 'description' field.
...
* gnu/packages/syncthing.scm (go-github-com-vitrun-qart-qr)[description]:
Remove duplicate 'description' field.
2018-04-21 05:29:53 -04:00
6b2752526b
gnu: uget: Remove duplicate 'native-inputs' field.
...
* gnu/packages/bittorrent.scm (uget)[native-inputs]: Remove duplicate
field initializer.
2018-04-21 05:29:42 -04:00
3fe49e5015
gnu: linux-libre@4.9: Update to 4.9.95.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.95.
2018-04-21 03:02:57 -04:00
9a58840235
gnu: Add osc.
...
* gnu/packages/build-tools.scm (osc): New variable.
2018-04-21 08:40:40 +02:00
2f69121808
gnu: Add python-m2crypto, python2-m2crypto.
...
* gnu/packages/python-crypto.scm (python-m2crypto): New variable.
(python2-m2crypto): New variable.
2018-04-21 08:40:40 +02:00
c596461187
gnu: Add python2-urlgrabber.
...
* gnu/packages/python-web (python2-urlgrabber): New variable.
2018-04-21 08:40:40 +02:00
15ed90b960
gnu: Add python-onetimepass.
...
* gnu/packages/python.scm (python-onetimepass): New variable.
2018-04-21 08:33:34 +02:00
b5178b3254
gnu: perl: Hack the replacement perl to think it is version 5.26.1.
...
Fixes <https://bugs.gnu.org/31216 >.
This is a followup to commits 217b8c2e0644b98b0002
2018-04-21 01:17:44 -04:00
5618193694
gnu: perl: Add more compatibility symlinks to the replacement perl.
...
Fixes <https://bugs.gnu.org/31216 >.
Reported by Julien Lepiller <julien@lepiller.eu>.
* gnu/packages/perl.scm (perl-5.26.2)[arguments]: Rename the
'workaround-grafting-version-bug' phase to 'install-compatibility-symlinks'.
Install symlinks in $out/lib/perl5/site_perl/5.26.1 and $out/bin/perl5.26.1,
in addition to $out/lib/perl5/5.26.1. Simplify the code a bit.
2018-04-20 23:29:14 -04:00
1af4212ae4
gnu: emacs-org, emacs-org-contrib: Update version.
...
* gnu/packages/emacs.scm (emacs-org): Update to 9.1.10.
(emacs-org-contrib): Update to 20180416.
2018-04-20 12:31:28 +02:00
582c122e7b
gnu: emacs-sx: Fix byte compilation.
...
The package would fail building when attempting to create a cache
directory. This has been fixed upstream but not in a tagged release.
* gnu/packages/emacs.scm (emacs-sx): Update to latest git version.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2018-04-20 15:38:32 +05:30
9835a71d80
gnu: emacs-esxml: Fix byte compilation.
...
* gnu/packages/emacs.scm (emacs-esxml)[arguments]: Add fix-sources phase.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2018-04-20 14:49:26 +05:30
62950ec7e9
gnu: Add emacs-kv.
...
* gnu/packages/emacs.scm (emacs-kv): New variable.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2018-04-20 14:49:20 +05:30
9324d92e6a
gnu: lvm2: Enable pkg-config files generation.
...
* gnu/packages/linux.scm (lvm2)[arguments]: Enable pkg-config files generation
via configure flag.
2018-04-20 10:38:50 +02:00
e60352e453
gnu: Add go-golang-org-x-crypto-ssh-terminal.
...
* gnu/packages/golang.scm (go-golang-org-x-crypto-ssh-terminal): New variable.
2018-04-20 10:38:31 +02:00
5368e67c4e
gnu: emacs-realgud: Update to 1.4.5.
...
* gnu/packages/emacs.scm (emacs-realgud): Update to 1.4.5.
2018-04-20 13:42:58 +05:30
aea388cf36
gnu: emacs-realgud: Fix autogen.sh after EMACSLOADPATH is set.
...
* gnu/packages/emacs.scm (emacs-realgud)[arguments]: Move the
fix-autogen-script phase to after the set-emacs-load-path phase.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2018-04-20 13:30:39 +05:30
872bda5de5
gnu: linux-libre: Update to 4.16.3.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.16.3.
(%linux-libre-hash): Update hash.
2018-04-19 18:55:23 -04:00
58f427de8a
gnu: linux-libre@4.14: Update to 4.14.35.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.35.
(%linux-libre-4.14-hash): Update hash.
2018-04-19 18:54:25 -04:00
652741cf28
gnu: emacs-deferred: Enable tests.
...
* gnu/packages/emacs.scm (emacs-deferred)[arguments]: Add fix-makefile
phase. Set #:test-command, and enable tests.
[native-inputs]: Add emacs-ert-expectations, emacs-undercover and ert-runner.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2018-04-20 02:09:10 +05:30
1848cdfb7d
gnu: emacs-memoize: Update to 1.1.
...
* gnu/packages/emacs.scm (emacs-memoize): Update to 1.1. Re-indent.
[source]: Switch to release tarball.
[arguments]: Remove "-l" "memoize.el" from #:test-command.
2018-04-20 01:09:46 +05:30
76fa5e042b
gnu: guix: Add po4a input.
...
* gnu/packages/package-management.scm (guix)[inputs]: Add po4a.
2018-04-19 21:30:49 +02:00
9490c411f0
gnu: ert-runner: Adjust ert-runner wrapper to honor EMACSLOADPATH.
...
* gnu/packages/emacs.scm (ert-runner): Use 'prefix instead of '= for setting
the EMACSLOADPATH environment variable. Reuse the already computed
EMACSLOADPATH for wrap-program. Specify the dependencies directly in the
inputs field.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2018-04-20 00:49:53 +05:30
d1d41db6bb
gnu: Adapt Emacs packages to use the new check phase.
...
* gnu/packages/emacs.scm (emacs-dash, emacs-s, emacs-string-inflection,
emacs-company, emacs-clojure-mode, emacs-julia-mode, emacs-elfeed,
emacs-memoize, emacs-use-package, emacs-xmlgen, emacs-json-reformat,
emacs-which-key, emacs-ws-butler, emacs-git-messenger, emacs-browse-at-remote,
emacs-evil-quickscope)[arguments]: Add #:tests? and #:test-command arguments
to use the new check phase.
(emacs-json-reformat)[inputs]: Move emacs-dash and emacs-shut-up to ...
[native-inputs]: here. Add ert-runner.
(emacs-company)[arguments]: Refactor fix-bin-dir phase.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2018-04-20 00:49:53 +05:30
259ed58fef
gnu: emacs-pdf-tools: Fix byte compilation.
...
* gnu/packages/emacs.scm (emacs-pdf-tools)[arguments]: Add
emacs-set-emacs-load-path phase.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2018-04-20 00:49:53 +05:30
2bb915e679
gnu: u-boot-odroid-c2: Remove variable.
...
U-boot for this target requires a binary blob to boot correctly.
* gnu/packages/bootloaders.scm (u-boot-odroid-c2): Remove variable.
2018-04-19 21:42:12 +03:00
7c16af4646
gnu: python-bcrypt: Move to (gnu packages python-crypto).
...
* gnu/packages/password-utils.scm (python-bcrypt, python2-bcrypt): Move to ...
* gnu/packages/python-crypto.scm (python-bcrypt, python2-bcrypt): ... here.
* gnu/packages/python.scm: Remove unused (gnu packages password-utils) import.
2018-04-19 18:03:04 +02:00
44b98b0002
gnu: Perl: Fix a grafting failure due to a path that includes the package version.
...
Fixes <https://bugs.gnu.org/31210 >.
* gnu/packages/perl.scm (perl-5.26.2): Don't use package/inherit.
[arguments]: Add a 'workaround-grafting-version-bug' phase.
2018-04-19 10:37:17 -04:00
d28e5ad23c
gnu: guile-curl: Use invoke.
...
* gnu/packages/curl.scm (guile-curl): Use invoke instead of system*.
2018-04-19 14:26:35 +02:00
b164233851
gnu: Add fortune-mod.
...
* gnu/packages/games.scm (fortune-mod): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-04-19 11:53:58 +02:00
9a3fb60ca3
gnu: Add perl-test-runvalgrind
...
* gnu/packages/perl-check.scm (perl-test-runvalgrind): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-04-19 11:48:45 +02:00
e118a013c8
gnu: Add perl-io-all.
...
* gnu/packages/perl.scm (perl-io-all): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-04-19 11:48:35 +02:00
7234fbcb25
gnu: Add perl-file-readbackwards.
...
* gnu/packages/perl.scm (perl-file-readbackwards): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-04-19 11:47:44 +02:00
0818c01aef
gnu: libfive: Add snippet, enable tests and remove obsolete phase.
...
* gnu/packages/engineering.scm (libfive)[source]: Add snippet to
remove bundled catch.
[arguments]: Remove #:tests?. Add #:test-target. Remove phase
'add-eigen-to-search-path'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-04-19 11:24:37 +02:00
541dac8aee
gnu: Add spindle.
...
* gnu/packages/admin.scm (spindle): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-04-19 11:10:06 +02:00
3ebf2c2947
gnu: Add launchmon.
...
* gnu/packages/admin.scm (launchmon): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-04-19 11:10:02 +02:00
67a51b6755
gnu: mcron: Update to 1.1.1.
...
Fixes <https://bugs.gnu.org/31113 >.
Reported by George myglc2 Clemmer <myglc2@gmail.com>.
* gnu/packages/guile.scm (mcron): Update to 1.1.1.
[arguments]: Change timezone in 'set-timezone' phase. Remove
'disable-schedule-test' and 'wrap-programs' phases. Add 'adjust-tests'
phase.
* gnu/tests/base.scm (%mcron-os): Change JOB1 to use the 'next-seconds'
form.
2018-04-19 00:14:50 +02:00
28ca6b35d9
gnu: Add emacs-lispyville.
...
* gnu/packages/emacs.scm (emacs-lispyville): New variable.
2018-04-19 00:13:04 +02:00
e8360eb8ea
gnu: emacs-lispy: Change source to recent Git commit.
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* gnu/packages/emacs.scm (emacs-lispy): Wrap with let, and change source to
the Git repository.
[propagated-inputs]: Add emacs-zoutline.
2018-04-19 00:13:04 +02:00
30cf707088
gnu: Add emacs-zoutline.
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* gnu/packages/emacs.scm (emacs-zoutline): New variable.
2018-04-19 00:11:40 +02:00
Efraim Flashner