86c8b2f5f5
gnu: r-knitr: Update to 1.22.
...
* gnu/packages/statistics.scm (r-knitr): Update to 1.22.
2019-03-21 00:02:49 +01:00
b6c5b0aca2
gnu: r-highr: Update to 0.8.
...
* gnu/packages/statistics.scm (r-highr): Update to 0.8.
2019-03-21 00:02:49 +01:00
1f2862b1be
gnu: r-lazyeval: Update to 0.2.2.
...
* gnu/packages/statistics.scm (r-lazyeval): Update to 0.2.2.
2019-03-21 00:02:49 +01:00
a9c8127290
gnu: r-stringi: Update to 1.4.3.
...
* gnu/packages/statistics.scm (r-stringi): Update to 1.4.3.
2019-03-21 00:02:49 +01:00
2bf224d0ca
gnu: r-permute: Update to 0.9-5.
...
* gnu/packages/statistics.scm (r-permute): Update to 0.9-5.
2019-03-21 00:02:49 +01:00
35663627fb
gnu: r-matrix: Update to 1.2-16.
...
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-16.
2019-03-21 00:02:49 +01:00
95bf4508e5
gnu: qtractor: Update to 0.9.6.
...
* gnu/packages/music.scm (qtractor): Update to 0.9.6.
2019-03-21 00:02:49 +01:00
8e91ad0b5c
gnu: r-ape: Update to 5.3.
...
* gnu/packages/cran.scm (r-ape): Update to 5.3.
2019-03-21 00:02:49 +01:00
db39269c89
gnu: r-maldiquant: Update to 1.19.2.
...
* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.19.2.
2019-03-21 00:02:49 +01:00
42f344faf7
gnu: Add r-libcoin.
...
* gnu/packages/cran.scm (r-libcoin): New variable.
2019-03-21 00:02:48 +01:00
d1021421d9
gnu: r-callr: Update to 3.2.0.
...
* gnu/packages/cran.scm (r-callr): Update to 3.2.0.
2019-03-21 00:02:48 +01:00
df04509932
gnu: r-dendextend: Update to 1.10.0.
...
* gnu/packages/cran.scm (r-dendextend): Update to 1.10.0.
2019-03-21 00:02:48 +01:00
ffd6e2fd8f
gnu: r-sys: Update to 3.1.
...
* gnu/packages/cran.scm (r-sys): Update to 3.1.
2019-03-21 00:02:48 +01:00
28d0eb2565
gnu: r-diversitree: Fix typo.
...
* gnu/packages/bioinformatics.scm (r-diversitree)[propagated-inputs]: Fix typo
in package labels.
2019-03-21 00:02:48 +01:00
d14c770d55
gnu: Add r-insight.
...
* gnu/packages/cran.scm (r-insight): New variable.
2019-03-21 00:02:48 +01:00
8b672b2c48
gnu: blender: Restore version 2.79b for systems without OpenGL 3.
...
Fixes <https://bugs.gnu.org/33882 >.
* gnu/packages/graphics.scm (blender-2.79): New variable.
(blender)[description]: Remove obsolete claim that the stable
release no longer works in Guix.
* gnu/packages/patches/blender-2.79-newer-ffmpeg.patch,
gnu/packages/patches/blender-2.79-python-3.7-fix.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2019-03-20 18:20:36 -04:00
933cc19684
gnu: r-annotationhub: Update to 2.14.5.
...
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.5.
2019-03-20 22:32:37 +01:00
e49d5d34ed
gnu: r-genomicfeatures: Update to 1.34.6.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.6.
2019-03-20 22:32:32 +01:00
2b83d218d8
gnu: r-variantannotation: Update to 1.28.13.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.13.
2019-03-20 22:32:25 +01:00
0adb6f207b
gnu: r-category: Update to 2.48.1.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.48.1.
2019-03-20 22:32:17 +01:00
e014dc78f0
gnu: r-dexseq: Update to 1.28.3.
...
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.3.
2019-03-20 22:32:11 +01:00
877fd189c4
gnu: r-annotate: Update to 1.60.1.
...
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.60.1.
2019-03-20 22:31:59 +01:00
ceab33feee
gnu: guile-wm: Compile and use canonical directories.
...
Fixes <https://bugs.gnu.org/34922 >.
* gnu/packages/guile-wm.scm (guile-wm)[arguments]: Rename "set-go-directory"
phase to "set-module-directory"; change "set-load-path" phase to wrap
executable in the correct environment variables; add phase "install-go-files".
2019-03-20 21:04:31 +01:00
6854a5d5f7
gnu: obs: Update to 23.0.2.
...
* gnu/packages/video.scm (obs): Update to 23.0.2.
2019-03-20 20:42:42 +01:00
6b455f8c55
gnu: perl-plack-middleware-methodoverride: Update to 0.20.
...
* gnu/packages/web.scm (perl-plack-middleware-methodoverride): Update to 0.20.
2019-03-20 20:42:41 +01:00
84cd5bd7f8
gnu: perl-uri-template: Update to 0.24.
...
* gnu/packages/web.scm (perl-uri-template): Update to 0.24.
2019-03-20 20:42:41 +01:00
0341fb9b68
gnu: mkfontscale: Update to 1.2.0.
...
* gnu/packages/xorg.scm (mkfontscale): Update to 1.2.0.
2019-03-20 20:42:41 +01:00
bcc27a6533
gnu: xf86-video-ati: Update to 19.0.1.
...
* gnu/packages/xorg.scm (xf86-video-ati): Update to 19.0.1.
2019-03-20 20:42:40 +01:00
cbea33132a
gnu: xf86-video-amdgpu: Update to 19.0.1.
...
* gnu/packages/xorg.scm (xf86-video-amdgpu): Update to 19.0.1.
2019-03-20 20:42:40 +01:00
c21242d920
gnu: pencil2d: Update to 0.6.3.
...
* gnu/packages/animation.scm (pencil2d): Update to 0.6.3.
2019-03-20 20:42:40 +01:00
dee92e65a2
gnu: python-colorspacious: Don't use unstable tarball.
...
* gnu/packages/python-xyz.scm (python-colorspacious)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-03-20 20:42:39 +01:00
c74da2b6c4
gnu: linux-libre: Update to 5.0.3.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.3.
(%linux-libre-hash): Update hash.
2019-03-20 15:34:16 -04:00
c65cce08b4
gnu: linux-libre@4.19: Update to 4.19.30.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.30.
(%linux-libre-4.19-hash): Update hash.
2019-03-20 15:34:14 -04:00
7cbbee4a85
gnu: linux-libre@4.14: Update to 4.14.107.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.107.
(%linux-libre-4.14-hash): Update hash.
2019-03-20 15:34:12 -04:00
c62d0e678f
gnu: linux-libre@4.9: Update to 4.9.164.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.164.
2019-03-20 15:34:09 -04:00
bcf66fc2e7
gnu: samba: Update to 4.10.0.
...
* gnu/packages/samba.scm (samba): Update to 4.10.0.
[native-inputs]: Replace python-2 with python.
2019-03-20 20:25:51 +01:00
14e6b6a0ae
gnu: xpra: Update to 2.5.
...
* gnu/packages/xorg.scm (xpra): Update to 2.5.
2019-03-20 20:25:51 +01:00
5493320274
gnu: iproute2: Update to 5.0.0.
...
* gnu/packages/linux.scm (iproute): Update to 5.0.0.
[inputs, native-inputs]: Order alphabetically.
2019-03-20 16:21:06 +01:00
af184b68e7
gnu: 389-ds-base: Use more global directories.
...
* gnu/packages/openldap.scm (389-ds-base)[arguments]: Pass
"with-instconfigdir"; add phase "overwrite-default-locations" to overwrite
defaults for "initconfig_dir", the certificate location, and the location of
the defaults file.
2019-03-20 12:19:56 +01:00
19a0a060d2
gnu: 389-ds-base: Fix tool references.
...
* gnu/packages/openldap.scm (389-ds-base)[arguments]: Rename phase
"fix-includes" to "fix-references" and fix references to certutil and
c_rehash.
[inputs]: Add nss:bin.
2019-03-20 12:19:55 +01:00
35f9c6628f
gnu: Add adapterremoval.
...
* gnu/packages/bioinformatics.scm (adapterremoval): New variable.
2019-03-20 12:19:55 +01:00
7627bad6a7
gnu: 389-ds-base: Set localstatedir to /var.
...
* gnu/packages/openldap.scm (389-ds-base)[arguments]: Set localstatedir to
/var.
2019-03-20 12:19:55 +01:00
cbc6a28b67
gnu: 389-ds-base: Update to 1.4.0.21.
...
* gnu/packages/openldap.scm (389-ds-base): Update to 1.4.0.21.
[arguments]: Add phase "fix-includes".
[inputs]: Add cracklib.
2019-03-20 12:19:55 +01:00
3d7a7b1dd6
gnu: emacs-helm-notmuch: Update to 1.2.
...
* gnu/packages/emacs-xyz.scm (emacs-helm-notmuch): Update to 1.2.
2019-03-20 11:58:37 +01:00
7c45593b44
gnu: libinfinity: Update to 0.7.1.
...
* gnu/packages/gobby.scm (libinfinity): Update to 0.7.1.
[inputs]: Remove gtk+-2. Add gtk+.
2019-03-20 15:40:43 +05:30
6d96a4f769
gnu: icecat: Update to 60.6.0-guix1 [security-fixes].
...
Includes fixes for CVE-2018-18506, CVE-2019-9788, CVE-2019-9790,
CVE-2019-9791, CVE-2019-9792, CVE-2019-9793, CVE-2019-9794, CVE-2019-9795,
CVE-2019-9796, and CVE-2019-9801.
* gnu/packages/gnuzilla.scm (%icecat-version): Update to 60.6.0-guix1.
(icecat-source)[upstream-firefox-source]: Update hash.
2019-03-19 22:36:44 -04:00
8cf160e122
gnu: icecat: Improve computed 'icecat-source' tarball.
...
* gnu/packages/gnuzilla.scm (icecat-source): When packing the new IceCat
tarball, set the mtime of archived files to early 1980. Remove useless
'string-append' applied to one argument.
2019-03-19 22:36:37 -04:00
d17b1c0891
gnu: knot: Update to 2.8.0.
...
* gnu/packages/dns.scm (knot): Update to 2.8.0.
[source]: Add patch.
* gnu/packages/patches/knot-include-system-lmdb-header.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-03-20 00:44:57 +01:00
1c4d4196c2
gnu: cataclysm-dda: Update to 0.D.
...
* gnu/packages/games.scm (cataclysm-dda): Update to 0.D.
2019-03-19 16:18:56 -04:00
c1d6865166
gnu: gandi.cli: Update to 1.4.
...
* gnu/packages/networking.scm (gandi.cli): Update to 1.4.
2019-03-19 18:21:17 +01:00
47982ca9b0
gnu: python-ipy: Update to 1.00.
...
* gnu/packages/networking.scm (python-ipy): Update to 1.00.
2019-03-19 18:21:16 +01:00
598c2bbc53
gnu: google-brotli: Update to 1.0.7.
...
* gnu/packages/compression.scm (google-brotli): Update to 1.0.7.
2019-03-19 16:57:48 +01:00
fc82c1752e
gnu: google-brotli: Don't use unstable tarball.
...
* gnu/packages/compression.scm (google-brotli)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-03-19 16:57:47 +01:00
7f5a010b9a
gnu: perl-catalyst-plugin-session: Update to 0.41.
...
* gnu/packages/web.scm (perl-catalyst-plugin-session): Update to 0.41.
2019-03-19 16:57:47 +01:00
2f67ac377a
gnu: perl-catalyst-action-rest: Update to 1.21.
...
* gnu/packages/web.scm (perl-catalyst-action-rest): Update to 1.21.
2019-03-19 16:57:47 +01:00
96473656ad
gnu: perl-apache-logformat-compiler: Update to 0.35.
...
* gnu/packages/web.scm (perl-apache-logformat-compiler): Update to 0.35.
[native-inputs]: Replace perl-module-build with
perl-module-build-tiny.
2019-03-19 16:57:47 +01:00
c10c9b6765
gnu: geomyidae: Update to 0.34.
...
* gnu/packages/web.scm (geomyidae): Update to 0.34.
2019-03-19 16:57:46 +01:00
e0d6d1d56c
gnu: geomyidae: Update home page.
...
* gnu/packages/web.scm (geomyidae)[home-page]: Point to relevant Web content.
2019-03-19 16:57:45 +01:00
429947ef62
gnu: geomyidae: Don't use unstable tarball.
...
* gnu/packages/web.scm (geomyidae)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-03-19 16:57:45 +01:00
ab3423d2ff
gnu: youtube-dl: Update to 2019.03.18.
...
* gnu/packages/video.scm (youtube-dl): Update to 2019.03.18.
2019-03-19 16:57:45 +01:00
8486a80d6a
gnu: dcmtk: Support more.
...
* gnu/packages/image-processing.scm (dcmtk)[inputs]: Add libxml2, and openssl.
2019-03-19 16:57:45 +01:00
882d579d3f
gnu: dcmtk: Update to 3.6.4.
...
* gnu/packages/image-processing.scm (dcmtk): Update to 3.6.4.
[inputs]: Add libjpeg. Order alphabetically. Move doxygen…
[native-inputs]: …here. Remove perl. Order alphabetically.
2019-03-19 16:57:44 +01:00
d2ad4f2e00
gnu: dcmtk: Use HTTPS home page.
...
* gnu/packages/image-processing.scm (dcmtk)[home-page]: Use HTTPS.
2019-03-19 16:57:44 +01:00
c0aaca02c7
gnu: Add emacs-helm-wikipedia.
...
* gnu/packages/emacs-xyz.scm (emacs-helm-wikipedia): New variable.
2019-03-19 15:55:08 +01:00
2390e0d4d6
gnu: emacs-evil-collection: Update to 20190319.
...
* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 20190319.
2019-03-19 14:55:06 +01:00
f20c64ed0b
gnu: scanmem: Enable GUI frontend.
...
* gnu/packages/debug.scm (scanmem): Enable GUI frontend.
[arguments]: Add "--enable-gui" configure flag and 'hardcode-python,
'wrap-gameconqueror phases.
[native-inputs]: Add python-wrapper, gobject-introspection, gtk+.
[propogated-inputs]: Add python-pygobject.
2019-03-19 13:59:40 +01:00
c5542196d5
gnu: nanopolish: Use python-wrapper.
...
* gnu/packages/bioinformatics.scm (nanopolish)[inputs]: Replace "python" with
"python-wrapper" as scripts require "python" executable.
2019-03-19 13:30:41 +01:00
7c1685e9d8
gnu: nanopolish: Remove bundled library sources.
...
* gnu/packages/bioinformatics.scm (nanopolish)[source]: Add snippet to remove
bundled htslib sources.
2019-03-19 13:30:41 +01:00
cf31179062
gnu: hyperledger-fabric: Use git tag.
...
* gnu/packages/hyperledger.scm (hyperledger-fabric)[source]: Check out
the (supposedly immutable) tag instead of the (maintenance) branch.
2019-03-19 12:22:18 +01:00
3e0df6cd4a
gnu: Add emacs-org-re-reveal.
...
* gnu/packages/emacs-xyz.scm (emacs-org-re-reveal): New variable.
2019-03-19 11:32:30 +01:00
dfb49d7820
gnu: emacs-org-reveal: Update to 1cdd088.
...
* gnu/packages/emacs-xyz.scm (emacs-org-reveal): Update to 1cdd088.
2019-03-19 11:32:30 +01:00
6e4a5b9e37
gnu: emacs-org-reveal: Use git-version and git-file-name.
...
* gnu/packages/emacs-xyz.scm (emacs-org-reveal)[version]: Use git-version.
[source]: Use git-file-name.
2019-03-19 11:32:30 +01:00
4790365308
gnu: Add edgar.
...
* gnu/packages/games.scm (edgar): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-19 11:30:34 +01:00
718d358a72
gnu: coq-flocq: remove unnecessary return values
...
* gnu/packages/coq.scm (coq-flocq)[arguments]: Add unnecessary return
values after 'invoke' calls.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-19 11:30:34 +01:00
1d6589db81
gnu: Add python-flint.
...
* gnu/packages/algebra.scm (python-flint): New variable.
* gnu/packages/patches/python-flint-includes.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register the patch.
2019-03-19 10:45:17 +01:00
835dada6e4
gnu: Add rtv.
...
* gnu/packages/syndication.scm (rtv): New variable.
2019-03-19 08:48:33 +02:00
9569db373c
gnu: Add python-vcrpy.
...
* gnu/packages/python-check.scm (python-vcrpy): New variable.
2019-03-19 08:48:29 +02:00
5cfe7ad870
gnu: MPD: Update to 0.21.6.
...
* gnu/packages/mpd.scm (mpd): Update to 0.21.6.
2019-03-18 20:29:25 -04:00
8f350d83a4
gnu: autorandr: Fix typo in synopsis.
...
* gnu/packages/xdisorg.scm (autorandr)[synopsis]: Fix typo.
2019-03-18 23:52:42 +01:00
9e1d9a0a46
gnu: python-biom-format: Fix build.
...
* gnu/packages/bioinformatics.scm (python-biom-format)[source]: Remove
generated C files.
[arguments]: Disable second broken test.
2019-03-18 23:46:27 +01:00
0fa926c2e5
gnu: python-pyarrow: Update to 0.10.0.
...
* gnu/packages/databases.scm (python-pyarrow): Update to 0.10.0.
[arguments]: Delete "build" phase.
[native-inputs]: Add python-pytest-runner.
2019-03-18 23:46:27 +01:00
e58d3a5926
gnu: apache-arrow: Update to 0.10.0.
...
* gnu/packages/databases.scm (apache-arrow): Update to 0.10.0.
[inputs]: Replace jemalloc-4.5.0 with jemalloc.
2019-03-18 23:46:27 +01:00
cdfea208b8
gnu: dav1d: Update to 0.2.1.
...
* gnu/packages/video.scm (dav1d): Update to 0.2.1.
2019-03-18 23:42:49 +01:00
362f5306e4
gnu: st: Update to 0.8.2.
...
* gnu/packages/suckless.scm (st): Update to 0.8.2.
[arguments]: Re-indent.
2019-03-18 23:42:48 +01:00
4b886fb00c
gnu: darktable: Update to 2.6.1.
...
* gnu/packages/photo.scm (darktable): Update to 2.6.1.
2019-03-18 23:42:48 +01:00
9081333bcd
gnu: cracklib: Update to 2.9.7.
...
* gnu/packages/password-utils.scm (cracklib): Update to 2.9.7.
[source]: Remove patches.
* gnu/packages/patches/cracklib-CVE-2016-6318.patch,
gnu/packages/patches/cracklib-fix-buffer-overflow.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove them.
2019-03-18 23:42:48 +01:00
ef501bb105
gnu: speedtest-cli: Update to 2.1.1.
...
* gnu/packages/networking.scm (speedtest-cli): Update to 2.1.1.
2019-03-18 23:42:47 +01:00
0a8c2c98fb
gnu: ntp: Update to 4.2.8p13.
...
* gnu/packages/ntp.scm (ntp): Update to 4.2.8p13.
2019-03-18 23:42:47 +01:00
d7caf8b8cd
gnu: setbfree: Update to 0.8.8.
...
* gnu/packages/music.scm (setbfree): Update to 0.8.8.
2019-03-18 23:42:47 +01:00
5dfbf5620c
gnu: Add emacs-xr.
...
* gnu/packages/emacs-xyz.scm (emacs-xr): New variable.
2019-03-18 23:35:32 +01:00
402db5113f
gnu: arb: Update to 2.16.0.
...
* gnu/packages/algebra.scm (arb): Update to 2.16.0.
2019-03-18 23:22:33 +01:00
01d7cafeef
gnu: bwm-ng: Update to 0.6.2.
...
* gnu/packages/networking.scm (bwm-ng): Update to 0.6.2.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
[arguments]: Add ‘disable-premature-./configure’ phase.
[native-inputs]: Add autoconf and automake.
2019-03-18 22:17:37 +01:00
223ef546df
gnu: proxychains-ng: Update to 4.14.
...
* gnu/packages/networking.scm (proxychains-ng): Update to 4.14.
2019-03-18 22:17:37 +01:00
110387f894
gnu: proxychains-ng: Don't use NAME in source URI.
...
* gnu/packages/networking.scm (proxychains-ng)[source]: Hard-code NAME.
2019-03-18 22:17:37 +01:00
b2c52fc9ff
gnu: petsc: Update to 3.10.4.
...
* gnu/packages/maths.scm (petsc): Update to 3.10.4.
2019-03-18 22:17:37 +01:00
886e97725d
gnu: bitlbee-discord: Update to 0.4.2.
...
* gnu/packages/messaging.scm (bitlbee-discord): Update to 0.4.2.
2019-03-18 22:17:36 +01:00
d1ef0e024f
gnu: bitlbee-discord: Don't use unstable tarball.
...
* gnu/packages/messaging.scm (bitlbee-discord)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-03-18 22:17:36 +01:00
0e36b2b7d0
gnu: gnuplot: Update to 5.2.6.
...
* gnu/packages/maths.scm (gnuplot): Update to 5.2.6.
2019-03-18 22:17:36 +01:00
6e42cef0ab
gnu: Add bbmap.
...
* gnu/packages/bioinformatics.scm (bbmap): New variable.
2019-03-18 21:35:57 +01:00
43ec3b68e5
gnu: padthv1: Update to 0.9.6.
...
* gnu/packages/music.scm (padthv1): Update to 0.9.6.
2019-03-18 21:35:57 +01:00
Ricardo Wurmus