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11682 Commits

Author SHA1 Message Date
Ben Woodcroft a754eaf16d gnu: ruby-2.1: Update to 2.1.10. 
* gnu/packages/ruby.scm (ruby-2.1): Update to 2.1.10.
 2016-04-02 09:16:17 +10:00
Efraim Flashner f04433773d gnu: glpk: Update to 4.60. 
* gnu/packages/maths.scm (glpk): Update to 4.60.
 2016-04-01 16:52:54 +03:00
Ludovic Courtès 915363a3e2 gnu: wicd: Add template for WPA2-TTLS. 
* gnu/packages/patches/wicd-wpa2-ttls.patch: New file.
* gnu/packages/wicd.scm (wicd)[source]: Add it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-01 13:59:58 +02:00
Ludovic Courtès f5480572d0 gnu: wicd: Update to 1.7.4. 
* gnu/packages/wicd.scm (wicd): Update to 1.7.4.
[source]: Remove 'wicd-template-instantiation.patch'.
* gnu/packages/patches/wicd-template-instantiation.patch: Remove.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-04-01 13:59:58 +02:00
Efraim Flashner dbeaf8f203 gnu: postgresql: Update to 9.5.2. [fixes CVE-2016-2193, CVE-2016-3065] 
* gnu/packages/databases.scm (postgresql): Update to 9.5.2.
 2016-04-01 13:57:21 +03:00
Ricardo Wurmus 6499b70ebf gnu: Add r-ztable. 
* gnu/packages/statistics.scm (r-ztable): New variable.
 2016-04-01 11:46:19 +02:00
Jelle Licht ec67294611 gnu: Add jq. 
* gnu/packages/web.scm: (jq): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-04-01 11:56:30 +03:00
Jelle Licht 2d8cf0b3e7 gnu: Add oniguruma. 
* gnu/packages/textutils.scm (oniguruma): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-04-01 11:38:06 +03:00
alírio eyng 52af45adeb gnu: fontforge: Build fonts bit-reproducibly. 
* gnu/packages/fontutils.scm (fontforge)[source](snippet): Modify
tottf.c.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-04-01 00:05:42 +02:00
Jan Nieuwenhuizen 2cdeecbe4d gnu: move miscfiles into gnu-doc.scm 
* gnu/packages/miscfiles.scm: Remove file.
* gnu-sytem.am: Remove it.
* gnu/packages/gnu-doc.scm (miscfiles): Move here.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-04-01 00:05:42 +02:00
Jan Nieuwenhuizen ec0730cb67 gnu: Add gnu-standards. 
* gnu/packages/gnu-doc.scm: New file.
* gnu-system.am: Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-04-01 00:05:42 +02:00
Ludovic Courtès f4033fb5da cvs: Disable compression. 
Reported by Jan Nieuwenhuizen <janneke@gnu.org>.

* guix/build/cvs.scm (cvs-fetch): Use -z0.
 2016-04-01 00:05:42 +02:00
Jan Nieuwenhuizen ab83105bbe cvs: Allow checkouts when /tmp is a different device. 
* guix/build/cvs.scm (cvs-fetch): Use 'copy-recursively' instead of
'rename-file'.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-04-01 00:05:42 +02:00
alírio eyng 47268eec13 gnu: font-gnu-freefont-ttf: Update to 20120503 and build from source. 
* gnu/packages/fonts.scm (font-gnu-freefont-ttf): Update to 20120503.
[arguments]: Build from source.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-04-01 00:05:42 +02:00
Ludovic Courtès 97425486ee profiles: Use the right 'package-name->name+version'. 
* guix/profiles.scm: Use 'package-name->name+version' from (guix build
utils).  Fixes 'find-among-store-items' in 'gtk-icon-themes'.
 2016-04-01 00:05:42 +02:00
Efraim Flashner b5afe6f031 gnu: gnupg-2.0: Update to 2.0.30. 
* gnu/packages/gnupg.scm (gnupg-2.0): Update to 2.0.30.
 2016-03-31 21:14:25 +03:00
Ricardo Wurmus 9941e0812e ant-build-system: Keep jar manifest. 
* guix/build/ant-build-system.scm (default-build.xml): Generate default
manifest.
(strip-jar-timestamps): Repack jar archive with zip.
 2016-03-31 15:47:39 +02:00
Ricardo Wurmus ab50bba9f6 build-system/ant: Add zip. 
* guix/build-system/ant.scm (default-zip): New variable.
(lower): Add zip to native inputs.
 2016-03-31 15:47:32 +02:00
Ricardo Wurmus cb6ce89e21 build-system/r: Support "substitutable?" flag. 
* guix/build-system/r.scm (r-build): Support the "substitutable?" flag.
 2016-03-31 15:47:19 +02:00
Taylan Ulrich Bayırlı/Kammer d0457553d5 gnu: Add nmap. 
* gnu/packages/admin.scm (nmap): New variable.

Co-authored-by: Leo Famulari <leo@famulari.name>
 2016-03-31 02:08:56 -04:00
Leo Famulari dcd19c0af8 licenses: Add the nmap license. 
* guix/licenses.scm (nmap): New variable.
 2016-03-31 01:40:30 -04:00
Eric Bavier 42efe27a30 import: Add Hackage updater. 
* guix/import/hackage.scm (guix-package->hackage-name, hackage-package?)
  (latest-release): New procedures.
  (%hackage-updater): New variable.
* guix/scripts/refresh.scm (%updaters): Add it.
* doc/guix.texi (Invoking guix refresh): Mention it.
 2016-03-30 23:19:24 -05:00
Eric Bavier 2ae9c63f15 import: hackage: Silence download output. 
* guix/import/hackage.scm (hackage-fetch): Use http-fetch to avoid
  progress output from url-fetch.
 2016-03-30 23:19:24 -05:00
Eric Bavier f9ea74ad04 import: hackage: Factorize url synthesis. 
* guix/import/hackage.scm (hackage-source-url, hackage-cabal-url): New
  procedures.
  (hackage-fetch, hackage-module->sexp): Use them.
 2016-03-30 23:19:24 -05:00
Roel Janssen 4827b36d1f doc: Small fixes for typos and missing words. 
* doc/guix.texi (The Store Monad): Add a dot at the end of a sentence.
  (The Store Monad): Add "are" to make a complete sentence.
  (G-Expressions): Fix typo.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-03-30 23:39:47 +02:00
Chris Marusich 8a46205b41 doc: Clarify how to use the '#:python' parameter. 
* doc/guix.texi (Build Systems): Clearly distinguish between the package that
provides the Python interpreter for the build and the package that is to be
built.  Also, mention why one might want to use a specific Python version.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-03-30 23:39:47 +02:00
Chris Marusich 12af303f47 gnu: Add python2-s3cmd. 
* gnu/packages/python.scm (python2-s3cmd): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-03-30 23:39:47 +02:00
Chris Marusich daeeea7154 gnu: Add python-magic. 
* gnu/packages/python.scm (python-magic, python2-magic): New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-03-30 23:39:47 +02:00
Ludovic Courtès 3bd9672c85 ui: Add comment on the translation of "current". 
* guix/ui.scm (display-generation): Add "TRANSLATORS" comment.
 2016-03-30 23:39:47 +02:00
Ludovic Courtès d006e307b9 doc: Fix URL of gnutls-guile one-page-per-node manual. 
* doc/htmlxref.cnf: Fix gnutls-guile 'node' URL.
 2016-03-30 23:39:47 +02:00
Kei Yamashita 21d1811301 gnu: Add MilkyTracker. 
* gnu/packages/music.scm (milkytracker): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-03-30 23:45:44 +03:00
Efraim Flashner ddb8312911 gnu: python2-pbcore: Update to 1.2.8. 
* gnu/packages/bioinformatics.scm (python2-pbcore): Update to 1.2.8.
[native-inputs]: Add python2-docutils, python2-nose, python2-sphinx.
 2016-03-30 22:45:35 +03:00
rain1 96e9f097ee gnu: linux-libre: Avoid introducing timestamps into the build. 
* gnu/packages/linux.scm (linux-libre)[build-phase]: Set the
KCONFIG_NOTIMESTAMP and KBUILD_BUILD_TIMESTAMP environment variables to
avoid introducing timestamps into the build outputs.
 2016-03-30 15:22:04 -04:00
David Thompson aa2a0d4bb8 environment: Set a default value for PS1. 
* guix/scripts/environment.scm (launch-environment/container): Set PS1
  during container initialization.
 2016-03-30 09:09:40 -04:00
Efraim Flashner 8caf80fcf4 gnu: libcue: Fix source url. 
* gnu/packages/cdrom.scm (libcue)[source]: Fix url.
[home-page]: Project has moved to Github.
 2016-03-30 13:39:42 +03:00
Roel Janssen fa9f0e6c25 gnu: r-devtools: Update to 1.10.0. 
* gnu/packages/statistics.scm (r-devtools): Update to 1.10.0.
   (r-devtools)[propagated-inputs]: Add r-withr.
 2016-03-30 12:02:40 +02:00
Roel Janssen a080e50c15 gnu: Add r-withr. 
* gnu/packages/statistics.scm (r-withr): New variable.
 2016-03-30 12:02:28 +02:00
Ricardo Wurmus f315f4fcab gnu: r-genomation: Update to 1.2.2. 
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.2.2.
 2016-03-30 11:59:16 +02:00
Ricardo Wurmus 571f0b63d5 gnu: r-genomicfeatures: Update to 1.22.13. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to
  1.22.13.
 2016-03-30 11:59:16 +02:00
Ricardo Wurmus ffaf72ad96 gnu: r-rtracklayer: Update to 1.30.4. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.30.4.
 2016-03-30 11:59:15 +02:00
Ricardo Wurmus ac2d8b0fb8 gnu: r-genomicalignments: Update to 1.6.3. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to
  1.6.3.
 2016-03-30 11:59:15 +02:00
Ricardo Wurmus 7eade1c5f9 gnu: r-summarizedexperiment: Update to 1.0.2. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to
  1.0.2.
 2016-03-30 11:59:15 +02:00
Ricardo Wurmus 53fd0f5e1d gnu: r-biostrings: Update to 2.38.4. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.38.4.
 2016-03-30 11:59:15 +02:00
Ricardo Wurmus 5fe3115415 gnu: r-genomicranges: Update to 1.22.4. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.22.4.
 2016-03-30 11:59:15 +02:00
Ricardo Wurmus 9cc22d28d8 gnu: r-genomeinfodb: Update to 1.6.3. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.6.3.
 2016-03-30 11:59:15 +02:00
Efraim Flashner 48fa9312ab gnu: libpaper: Update source url. 
Reported by shanemikel_ on irc.

* gnu/packages/ghostscript.scm (libpaper)[source]: Update source url to
download from Fedora.
[home-page]: Use https.
 2016-03-30 10:49:03 +03:00
Ludovic Courtès 61cdad351d gnu: guix: Ignore the user's 'GUILE_LOAD_COMPILED_PATH'. 
Reported by <rain1@openmailbox.org>.

* gnu/packages/package-management.scm (guix-0.10.0)[arguments]: Use '=
instead of 'prefix in call to 'wrap-program'.
 2016-03-29 22:13:20 +02:00
Rene Saavedra 3a9a4c51e8 gnu: Add libzapojit. 
* gnu/packages/gnome.scm (libzapojit): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-03-29 22:13:20 +02:00
Leo Famulari b7fbf297c8 gnu: khal: Disable failing tests. 
* gnu/packages/calendar.scm (khal)[arguments]: Disable failing tests in
'disable-tests' phase.
 2016-03-29 15:35:00 -04:00
Efraim Flashner d1ceedf8b1 gnu: gst-plugins-good: Update to 1.8.0. 
* gnu/packages/gstreamer.scm (gst-plugins-good): Update to 1.8.0.
[home-page]: Use https.
[arguments]: Disable tests that fail non-deterministically.
 2016-03-29 21:34:52 +03:00