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156 Commits (07157e8ab4da5f868f31ffd99da177332f61f8c9)

Author SHA1 Message Date
Ludovic Courtès ce0614ddb0 gnu: Move 'which' to (gnu packages base). 
* gnu/packages/which.scm: Remove.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove it.
* gnu/packages/base.scm (which): New variable.
* gnu/packages/aspell.scm, gnu/packages/audio.scm,
  gnu/packages/autogen.scm, gnu/packages/cdrom.scm,
  gnu/packages/compression.scm, gnu/packages/datamash.scm,
  gnu/packages/games.scm, gnu/packages/glib.scm,
  gnu/packages/gnu-pw-mgr.scm, gnu/packages/gnutls.scm,
  gnu/packages/gps.scm, gnu/packages/guile.scm,
  gnu/packages/java.scm, gnu/packages/libevent.scm,
  gnu/packages/linux.scm, gnu/packages/lisp.scm,
  gnu/packages/node.scm, gnu/packages/ntp.scm,
  gnu/packages/orpheus.scm, gnu/packages/pciutils.scm,
  gnu/packages/python.scm, gnu/packages/qt.scm,
  gnu/packages/rsync.scm, gnu/packages/sawfish.scm,
  gnu/packages/scheme.scm, gnu/packages/ssh.scm,
  gnu/packages/statistics.scm, gnu/packages/texlive.scm,
  gnu/packages/wdiff.scm: Adjust accordingly.
 2015-03-04 17:23:27 +01:00
Ludovic Courtès 1289062522 Merge branch 'core-updates'. 2015-03-04 14:07:23 +01:00
Ricardo Wurmus 92cb152b37 gnu: Add snakemake. 
* gnu/packages/python.scm (snakemake): New variable.
 2015-03-03 10:22:23 +01:00
Ricardo Wurmus 240ca4aae7 gnu: Add Scikit-learn. 
* gnu/packages/python.scm (python-scikit-learn, python2-scikit-learn): New
  variables.
 2015-03-02 14:09:10 +01:00
Ricardo Wurmus 8d12be1eb1 gnu: Add pyyaml. 
* gnu/packages/python.scm (python-pyyaml, python2-pyyaml): New variables.
 2015-03-02 11:31:14 +01:00
Mark H Weaver 3820d39739 Merge branch 'master' into core-updates 
Conflicts:
	gnu/packages/gnupg.scm
 2015-03-01 19:05:29 -05:00
Mark H Weaver f586c87705 gnu: Add 'file-name' fields for github source tarballs without a name. 
* gnu/packages/aarddict.scm (aarddict), gnu/packages/algebra.scm (arb),
  gnu/packages/audio.scm (jack-2, lvtk),
  gnu/packages/bioinformatics.scm (bedops, bedtools, bowtie),
  gnu/packages/game-development.scm (tiled),
  gnu/packages/games.scm (minetest-data, minetest, retroarch),
  gnu/packages/jrnl.scm (jrnl), gnu/packages/kde.scm (qjson),
  gnu/packages/libevent.scm (libuv), gnu/packages/linux.scm (pflask),
  gnu/packages/mail.scm (offlineimap, libetpan),
  gnu/packages/maths.scm (arpack-ng), gnu/packages/ninja.scm (ninja),
  gnu/packages/nutrition.scm (gourmet),
  gnu/packages/python.scm (python-cairocffi), gnu/packages/rdf.scm (lrdf),
  gnu/packages/ruby.scm (ruby-i18n), gnu/packages/sxiv.scm (sxiv): Add
  'file-name' field to origin.
 2015-02-28 09:49:01 -05:00
Andreas Enge 88c268347b gnu: python: Drop special handling of python2-numpydoc as input. 
* gnu/packages/python.scm (python2-numpy, python2-matplotlib,
  python2-ipython): Keep input python2-numpydoc created by
  package-with-python2.
 2015-02-28 01:17:57 +01:00
Andreas Enge 5e4d8f6710 gnu: python-numpydoc: Drop one test. 
* gnu/packages/python.scm (python-numpydoc): Drop one test for all Python
  versions.
  (python2-numpydoc): Define it by package-with-python2 without modifications.
 2015-02-28 01:08:37 +01:00
Andreas Enge 7ca0dbc3f0 gnu: python2-py2cairo: Rename to python2-pycairo. 
* gnu/packages/gtk.scm (python2-py2cairo): Rename to ...
  (python2-pycairo): ... this
  (python2-pygtk): Adapt input.
* gnu/packages/glib.scm (python2-pygobject-2): Adapt input.
* gnu/packages/python.scm (package-with-python2): Adapt input.
 2015-02-27 23:53:57 +01:00
Ludovic Courtès 7184b4b1bd gnu: Remove now unneeded 'localedef' invocations. 
This is a followup to commit b0fd2bd.

* gnu/packages/gawk.scm (gawk)[arguments] <install-locales>: Add comment
  on why we leave this here.
* gnu/packages/guile.scm (guile-ncurses)[arguments]: Remove
  'install-locales' phase.
* gnu/packages/swig.scm (swig)[arguments]: Likewise.
* gnu/packages/python.scm (python-matplotlib): Remove 'LOCPATH' setting
  and 'localedef' invocation.
  (python-scipy): Likewise.
 2015-02-27 15:08:37 +01:00
Ludovic Courtès da6dd842d0 gnu: Remove now unneeded 'unpack' phases for unzip. 
This is a followup to commit cd0385b.

* gnu/packages/bioinformatics.scm (hisat)[arguments]: Remove 'unpack'
  phase.
* gnu/packages/image.scm (freeimage): Likewise.
* gnu/packages/python.scm (python2-cssutils): Likewise.
 2015-02-27 15:08:37 +01:00
Andreas Enge 3dd7547666 gnu: python-html5lib: Add propagated input. 
* gnu/packages/python.scm (python-html5lib): Add propagated input python-six.
  (python2-html5lib): Add propagated input python2-six.
 2015-02-25 00:58:20 +01:00
Andreas Enge 0c20025c05 gnu: Add python2-six. 
* gnu/packages/python.scm (python2-six): New variable.
 2015-02-25 00:58:20 +01:00
Andreas Enge 89b5c60ef9 gnu: python2-oauthlib: Drop inherited fields. 
* gnu/packages/python.scm (python2-oauthlib): Drop inherited fields.
 2015-02-23 18:41:10 +01:00
Ricardo Wurmus f18f8b7383 gnu: python-scipy: install UTF-8 locale. 
* gnu/packages/python.scm (python-scipy): Install en_US.UTF-8 locale in
  install-doc phase to avoid encoding error.
 2015-02-20 14:25:38 +01:00
Ricardo Wurmus 6754032f0c gnu: matplotlib: install UTF-8 locale. 
* gnu/packages/python.scm (python-matplotlib): Install en_US.UTF-8 locale in
  install-doc phase to avoid encoding error.
 2015-02-20 14:25:30 +01:00
Andreas Enge d3d656c5fb gnu: python-setuptools: Update to 12.1. 
*  gnu/packages/python.scm (python-setuptools, python2-setuptools):
     Update to 12.1.
 2015-02-15 23:10:58 +01:00
Andreas Enge 60357f99c4 gnu: Add python-netifaces. 
* gnu/packages/python.scm (python-netifaces, python2-netifaces):
    New variables.
 2015-02-15 10:46:43 +01:00
Andreas Enge 880ff77c17 gnu: Add python-cssselect. 
* gnu/packages/python.scm (python-cssselect, python2-cssselect):
    New variables.
 2015-02-14 19:39:20 +01:00
Andreas Enge 092e86f54f gnu: Add python2-cssutils. 
* gnu/packages/python.scm (python2-cssutils): New variable.
 2015-02-14 19:25:55 +01:00
Andreas Enge bec07a7c08 gnu: Add python2-pil. 
* gnu/packages/python.scm (python2-pil): New variable.
 2015-02-14 18:58:13 +01:00
Ludovic Courtès abde5f375f gnu: python-apsw: Fix license. 
* gnu/packages/python.scm (python-apsw)[license]: Change to
  LICENSE:ZLIB.
 2015-02-14 00:43:41 +01:00
Andreas Enge 4ed206639b gnu: Add python-pillow. 
* gnu/packages/python.scm (python-pillow, python2-pillow): New variables.
 2015-02-13 21:03:48 +01:00
Andreas Enge 26b307e2cc gnu: Add python-lxml. 
* gnu/packages/python.scm (python-lxml, python2-lxml): New variables.
 2015-02-12 21:14:38 +01:00
Andreas Enge bd3fa66676 gnu: python: Prefix expat license by "license:" to avoid conflicts with 
expat from the xml module.

* gnu/packages/python.scm: Prefix expat license imported from
    (guix licenses).
* gnu/packages/python.scm (python-lockfile, python-mock, python-pysam,
    python-extras, python-mimeparse, python-py, python-pytest,
    python-scripttest, python-jsonschema, python-pyjwt, python-virtualenv,
    python-sphinx-rtd-theme, python-pyparsing, python-cffi, python-xcffib,
    python-html5lib, python-dbus): Adapt license field.
 2015-02-12 21:07:14 +01:00
Andreas Enge a6ac8332be gnu: Add python-apsw. 
* gnu/packages/python.scm (python-apsw, python2-apsw): New variables.
 2015-02-12 20:19:31 +01:00
Ricardo Wurmus ad320b20ee gnu: Add Sphinx RTD theme. 
* gnu/packages/python.scm (python-sphinx-rtd-theme, python2-sphinx-rtd-theme):
  New variables.
 2015-02-09 10:29:55 +01:00
Mark H Weaver b52af02b5d gnu: Add python2-dbus. 
* gnu/packages/python.scm (python2-dbus): New variable.
 2015-02-04 01:36:09 -05:00
Pierre-Antoine Rault d95a56c632 gnu: Add python-dbus. 
* gnu/packages/python.scm (python-dbus): Add it. Makes use of dbus,
  dbus-glib and glib itself.
 2015-02-04 01:36:03 -05:00
Mark H Weaver be1f44bbd6 gnu: python-urwid: Remove Fedora mirror from source URI list. 
* gnu/packages/python.scm (python-urwid)[source]: Remove Fedora mirror.
 2015-02-04 00:11:06 -05:00
Mark H Weaver e99f421185 gnu: Add python-urwid and python2-urwid. 
Based on preliminary work by Omar Radwan <toxemicsquire4@gmail.com>.

* gnu/packages/python.scm (python-urwid, python2-urwid): New variables.
 2015-02-03 00:33:08 -05:00
Mark H Weaver 4e7a137a83 Revert "gnu: python-matplotlib: Remove python-pillow input." 
python-pillow is now fixed, so we can add it back.
This reverts commit dfbc33dceb.
 2015-02-02 15:19:12 -05:00
Mark H Weaver 5ade90ba69 Merge branch 'wip-gobject-introspection' 2015-01-25 21:15:13 -05:00
Andreas Enge e066928977 gnu: python-pyparsing: Update to 2.0.3. 
* gnu/packages/python.scm (python-pyparsing, python2-pyparsing): Update to 2.0.3.
 2015-01-23 21:50:56 +01:00
Andreas Enge 673ab897a3 gnu: Add python-html5lib. 
* gnu/packages/python.scm (python-html5lib, python2-html5lib): New variables.
 2015-01-20 22:42:28 +01:00
Andreas Enge 03411993a8 gnu: Add python-isodate. 
* gnu/packages/python.scm (python-isodate, python2-isodate): New variables.
 2015-01-20 22:16:58 +01:00
Federico Beffa da6ce3f1b8 gnu: python-scipy: Update to 0.15.0. 
* gnu/packages/python.scm (python-scipy): Update to 0.15.0.
 2015-01-18 18:05:53 +01:00
Federico Beffa 3e6ccb5355 gnu: python-matplotlib: Update comments. 
* gnu/packages/python.scm (python-matplotlib): Update comments as, with the
  patched 'gobject-introspection', setting LD_LIBRARY_PATH at run time is not
  anymore necessary.  It's still necessary at build time.
 2015-01-18 18:05:53 +01:00
Federico Beffa dfbc33dceb gnu: python-matplotlib: Remove python-pillow input. 
* gnu/packages/python.scm (python-matplotlib): Remove python-pillow input as
  it currently is broken.
 2015-01-18 18:05:53 +01:00
Federico Beffa ae1ab9fe82 gnu: Add IPython. 
* gnu/packages/python.scm (python-ipython, python2-ipython): New variable.
 2015-01-16 17:51:47 +01:00
Mark H Weaver 8cbb67e045 Merge branch 'master' into core-updates 2014-12-30 12:23:32 -05:00
Ludovic Courtès 07af3e5efe gnu: Fix or update a number of 'home-page' fields. 
* gnu/packages/fltk.scm (fltk): Fix 'home-page'.
* gnu/packages/fonts.scm (font-bitstream-vera): Likewise, and fix
  license URL.
* gnu/packages/games.scm (gnubg, cmatrix, chess): Fix 'home-page'.
* gnu/packages/kde.scm (attica): Likewise.
* gnu/packages/mail.scm (fetchmail): Likewise.
* gnu/packages/popt.scm (popt): Likewise.
* gnu/packages/python.scm (python-mock): Likewise.
* gnu/packages/stalonetray.scm (stalonetray): Likewise.
 2014-12-28 17:57:37 +01:00
Ludovic Courtès af07095516 packages: Add 'file-type' field to 'search-path-specification'. 
Fixes <http://bugs.gnu.org/18033>.

* guix/packages.scm (<search-path-specification>): Rename 'directories'
  field to 'files'.  Add 'file-type'.
  (search-path-specification->sexp): Honor 'file-type'.
* gnu/packages/autotools.scm, gnu/packages/bootstrap.scm,
  gnu/packages/cross-base.scm, gnu/packages/games.scm,
  gnu/packages/gcc.scm, gnu/packages/glib.scm,
  gnu/packages/guile.scm, gnu/packages/man.scm,
  gnu/packages/perl.scm, gnu/packages/pkg-config.scm,
  gnu/packages/python.scm, gnu/packages/ruby.scm,
  gnu/packages/xfce.scm: Change 'directories' to 'files'.
* tests/packages.scm ("search paths"): Change 'directories' field to
  'files'.
* guix/scripts/environment.scm (for-each-search-path): Likewise.
 2014-12-27 23:22:49 +01:00
Ricardo Wurmus be7134bf75 gnu: Add pysam. 
* gnu/packages/python.scm (python-pysam, python2-pysam): New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-12-26 23:28:13 +01:00
Ludovic Courtès 764c077b30 Revert "gnu: matplotlib: Comment out python2-matplotlib." 
This reverts commit afc720d34c.
 2014-12-23 19:17:17 +01:00
Federico Beffa afc720d34c gnu: matplotlib: Comment out python2-matplotlib. 
* gnu/packages/python.scm (python2-matplotlib, python2-scipy, python2-numpy):
  Comment out python2-matplotlib and the packages making use of it as the
  generation of the derivation of these packages takes very long.
 2014-12-23 17:56:48 +01:00
Federico Beffa 9e0997230c gnu: cairocffi: Move to python module. 
* gnu/packages/gtk.scm, gnu/packages/python.scm (python-cairocffi,
  python2-cairocffi): Move variables from gtk to python module to avoid
  circular dependency.

Reported by Mark H Weaver <mhw@netris.org>
 2014-12-18 22:00:19 +01:00
Federico Beffa 25f9a068f2 gnu: matplotlib: Add gtk3 backends and optional dependency. Adjust inputs. 
* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Add gtk3
  backends with the necessary inputs and a 'configure-environment' phase.  Add
  the optional 'python-pillow' dependency.  Move 'python-pyparsing' from
  'inputs' to 'propagated-inputs' as it is required at run time.
 2014-12-18 17:58:10 +01:00
Federico Beffa 6fa144692c gnu: Add xcffib 
* gnu/packages/python.scm (python-xcffib, python2-xcffib): New variables.
 2014-12-18 17:58:10 +01:00