07fdf96140
gnu: diffoscope: Update to 106.
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* gnu/packages/package-management.scm (diffoscope): Update to 106.
2018-11-25 12:57:26 +01:00
c1d80c7a9c
gnu: diffoscope: Fix test failure.
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* gnu/packages/package-management.scm (diffoscope)[arguments]: Remove
failing Berkeley DB test.
2018-11-25 12:57:20 +01:00
4820b75de0
Merge branch 'master' into core-updates
2018-11-24 19:44:05 +01:00
1261804985
gnu: python-pika: Update to 0.12.0.
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* gnu/packages/python.scm (python-pika): Update to 0.12.0.
2018-11-24 19:43:18 +01:00
4b2d1dc4dc
gnu: bless: Adjust to zlib static output.
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* gnu/packages/bioinformatics.scm (bless)[inputs]: Add ZLIB:STATIC.
[arguments]: Adjust #:make-flags accordingly.
2018-11-24 19:32:48 +01:00
1b3083267c
gnu: ocaml-piqilib: Remove duplicate 'home-page' field.
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This is a followup to commit 564cf93f2a
2018-11-24 13:30:06 -05:00
e1d97c4efc
gnu: rhythmbox: Update hash of patch.
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* gnu/packages/gnome.scm (rhythmbox)[source]: Update hash of the applied
patch.
2018-11-24 13:29:59 -05:00
5ff6e06763
gnu: adb: Fix FTBFS with Glibc 2.28.
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* gnu/packages/android.scm (adb)[arguments]: Add phase 'glibc-compat'.
2018-11-24 19:26:01 +01:00
45bc4b7ecb
gnu: python2-fasteners: Propagate python2-futures.
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* gnu/packages/python.scm (python-fasteners)[properties]: New field.
(python2-fasteners)[propagated-inputs]: Add PYTHON2-FUTURES.
2018-11-24 18:43:07 +01:00
366cd7fcba
gnu: python2-futures: Update to 3.2.0.
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* gnu/packages/python.scm (python2-futures): Update to 3.2.0.
2018-11-24 18:43:07 +01:00
799d4bac62
gnu: python2-futures: Disable tests.
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* gnu/packages/python.scm (python2-futures)[arguments]: Set #:test? #f.
2018-11-24 18:43:06 +01:00
4bddcae94b
gnu: sbcl: Update to 1.4.13.
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* gnu/packages/lisp.scm (sbcl): Update to 1.4.13.
[native-inputs]: Use minimal texlive-union instead of full texlive.
[native-inputs]: Use CCL instead of buggy CLISP.
[arguments]: Replace all (zero? (system* ...)) by invoke.
2018-11-24 18:36:14 +01:00
27ebd5c4f9
gnu: gcl: Remove unnecessary texlive input.
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* gnu/packages/lisp.scm (gcl)[native-inputs]: Remove texlive.
2018-11-24 18:36:13 +01:00
60667159d3
gnu: python-pycurl: Fix FTBFS from 7b84410046.
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* gnu/packages/python-web.scm (python-pycurl)[arguments]: Add phase
'configure-tls-backend'.
2018-11-24 15:57:56 +01:00
68f2e55206
gnu: ledger: Fix build with Boost >= 1.68.
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* gnu/packages/finance.scm (ledger)[arguments]: Add phase 'boost-compat.
2018-11-24 15:57:56 +01:00
f028823c0f
gnu: mosaik: Fix FTBFS from b90289dadc.
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* gnu/packages/bioinformatics.scm (mosaik)[inputs]: Add ZLIB:STATIC.
2018-11-24 15:57:56 +01:00
15b5f9f718
gnu: python-cheetah: Update to 3.1.0.
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* gnu/packages/python.scm (python2-cheetah): Rename to ...
(python-cheetah): ... this. Update to 3.1.0.
[arguments]: Add custom 'check' phase.
[propagated-inputs]: Change PYTHON2-MARKDOWN to PYTHON-MARKDOWN.
(python2-cheetah): Rewrite in terms of PACKAGE-WITH-PYTHON2.
2018-11-24 15:57:56 +01:00
59a1aa595b
gnu: python2-cheetah: Update home page.
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* gnu/packages/python.scm (python-cheetah)[home-page]: Update to current.
2018-11-24 15:57:56 +01:00
96cfa168e5
gnu: clojure: Move to new clojure.scm.
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* gnu/local.mk (clojure): Include new clojure.scm.
* gnu/packages/clojure.scm: Add clojure, clojure-algo-generic,
clojure-algo-monads, clojure-core-match, clojure-instaparse,
clojure-tools-macro.
* gnu/packages/lisp.scm: Remove clojure, clojure-algo-generic,
clojure-algo-monads, clojure-core-match, clojure-instaparse,
clojure-tools-macro.
2018-11-24 15:20:51 +01:00
e83c7d1aba
gnu: femtolisp: Move to scheme.scm.
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* gnu/packages/lisp.scm (femtolisp): Remove.
* gnu/packages/scheme.scm (femtolisp): Add.
2018-11-24 15:11:37 +01:00
083ce0ad5e
gnu: Add APFS-FUSE.
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* gnu/packages/file-systems.scm (apfs-fuse): New variable.
2018-11-23 21:54:52 -05:00
318507a6f6
gnu: linux-libre: Update to 4.19.4.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.19.4.
(%linux-libre-hash): Update hash.
2018-11-23 21:05:18 -05:00
245139cd0d
gnu: linux-libre@4.14: Update to 4.14.83.
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* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.83.
(%linux-libre-4.14-hash): Update hash.
2018-11-23 21:03:29 -05:00
268ba4cbcf
gnu: linux-libre@4.9: Update to 4.9.140.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.140.
2018-11-23 21:02:53 -05:00
f3d1a0463a
gnu: linux-libre@4.4: Update to 4.4.164.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.164.
2018-11-23 21:01:49 -05:00
5d46c8b47a
gnu: freedesktop.scm: Sort imports and remove duplicates.
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* gnu/packages/freedesktop.scm: Sort imports alphabetically.
2018-11-24 02:17:46 +01:00
01cef16f85
gnu: rust: Don't depend on 'git'.
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* gnu/packages/rust.scm (rust-1.19)[inputs]: Remove GIT.
(rust-1.20)[arguments]: Disable Cargo tests that require git.
(rust-1.26)[arguments]: Likewise.
2018-11-24 02:03:12 +01:00
52b24ba495
gnu: mariadb: Update to 10.1.37 [security fixes].
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This release fixes CVE-2018-3282, CVE-2018-3174, CVE-2018-3143, CVE-2018-3156,
and CVE-2018-3251. See
<https://mariadb.com/kb/en/library/mariadb-10137-release-notes/ > for details.
* gnu/packages/databases.scm (mariadb): Update to 10.1.37.
2018-11-24 02:03:12 +01:00
4d8f4a3f00
Merge branch 'master' into core-updates
2018-11-24 01:58:18 +01:00
dc4851093c
gnu: libraw: Update to 0.19.1.
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* gnu/packages/photo.scm (libraw): Update to 0.19.1.
2018-11-24 01:50:43 +01:00
43bcf392a7
gnu: libtorrent-rasterbar: Update to 1.1.11.
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* gnu/packages/bittorrent.scm (libtorrent-rasterbar): Update to 1.1.11.
2018-11-24 01:50:43 +01:00
c2be790fb1
gnu: Add deluge.
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* gnu/packages/bittorrent.scm (deluge): New variable.
Co-authored-by: Mike Rosset <mike.rosset@gmail.com>
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-24 01:50:43 +01:00
39da44c2c0
gnu: libtorrent-rasterbar: Compile Python bindings in C++11 mode.
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* gnu/packages/bittorrent.scm (libtorrent-rasterbar)[arguments]: Add phase to
substitute setup.py.
Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2018-11-24 01:50:43 +01:00
8afe166dd7
gnu: Add python-service-identity.
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* gnu/packages/python-crypto.scm (python-service-identity,
python2-service-identity): New variables.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-24 01:50:42 +01:00
f12f70b1f2
gnu: Add emacs-matrix-client.
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* gnu/packages/emacs.scm (emacs-matrix-client): New variable.
2018-11-23 21:43:15 +01:00
d4f7b7e127
gnu: Add emacs-a.
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* gnu/packages/emacs.scm (emacs-a): New variable.
2018-11-23 21:43:15 +01:00
8fc78612b5
gnu: Add emacs-tracking.
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* gnu/packages/emacs.scm (emacs-tracking): New variable.
2018-11-23 21:43:14 +01:00
87470116e6
gnu: Add emacs-ov.
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* gnu/packages/emacs.scm (emacs-ov): New variable.
2018-11-23 21:43:14 +01:00
57d30004e5
gnu: python-slepc4py: Update to 3.10.0.
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* gnu/packages/maths.scm (python-slepc4py): Update to 3.10.0.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-23 20:27:15 +01:00
cd3681a237
gnu: python-petsc4py: Update to 3.10.0.
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* gnu/packages/maths.scm (python-petsc4py): Update to 3.10.0.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-23 20:27:15 +01:00
e93da160ca
gnu: slepc: Update to 3.10.1.
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* gnu/packages/maths.scm (slepc): Update to 3.10.1.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-23 20:27:15 +01:00
e6951e4ee0
gnu: petsc: Update to 3.10.2
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* gnu/packages/maths.scm (petsc): Update to 3.10.2.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-23 20:27:15 +01:00
dc240b6aa5
gnu: python-ilinkedlist: Update to 0.4.0.
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* gnu/packages/python.scm (python-ilinkedlist): Update to 0.4.0.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-23 20:17:23 +01:00
c491f7f8de
gnu: pt-scotch, pt-scotch32: Add Open MPI setup phase.
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* gnu/packages/maths.scm (pt-scotch)[arguments]: Use 'invoke' instead of
'system*'. Add 'mpi-setup' phase.
(pt-scotch32)[arguments]: Likewise.
2018-11-23 18:44:47 +01:00
d57ec906ba
gnu: pigx-scrnaseq: Use latest snakemake.
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* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace snakemake-4
with snakemake.
2018-11-23 16:30:48 +01:00
92d9a1e2c6
gnu: pigx-bsseq: Use latest snakemake.
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* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace snakemake-4
with snakemake.
2018-11-23 16:30:16 +01:00
c068d00746
gnu: pigx-chipseq: Use latest snakemake.
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* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace snakemake-4
with snakemake.
2018-11-23 16:29:35 +01:00
936ea3d664
gnu: python-gevent: Update to 1.3.7.
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* gnu/packages/python.scm (python-gevent): Update to 1.3.7.
[arguments]: Find headers for greenlet in phase "do-not-use-bundled-sources".
[propagated-inputs]: Add python-objgraph.
2018-11-23 16:01:21 +01:00
72ffb51231
gnu: Add python-objgraph.
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* gnu/packages/python.scm (python-objgraph): New variable.
2018-11-23 16:01:07 +01:00
93d229cb86
gnu: python-loompy: Remove python-typing.
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* gnu/packages/bioinformatics.scm (python-loompy)[propagated-inputs]: Remove
python-typing.
2018-11-23 15:59:44 +01:00
Julien Lepiller