98e7307dd3
gnu: kakoune: Update to 2019.01.20.
...
* gnu/packages/text-editors.scm (kakoune): Update to 2019.01.20.
2019-03-21 04:06:58 +01:00
a1cb69280c
gnu: kakoune: Don't use NAME in source URI.
...
* gnu/packages/text-editors.scm (kakoune)[source]: Hard-code NAME.
2019-03-21 04:06:57 +01:00
f86d56a7af
gnu: terraform-docs: Update to 0.6.0.
...
* gnu/packages/terraform.scm (terraform-docs): Update to 0.6.0.
2019-03-21 04:06:57 +01:00
6cea61ebb5
gnu: r-spam: Update to 2.2-2.
...
* gnu/packages/cran.scm (r-spam): Update to 2.2-2.
2019-03-21 00:02:52 +01:00
a7524f7000
gnu: r-sjstats: Update to 0.17.4.
...
* gnu/packages/cran.scm (r-sjstats): Update to 0.17.4.
[propagated-inputs]: Remove r-bayesplot, r-coin, r-crayon, r-glmmtmb, r-nlme,
and r-pwr; add r-insight.
2019-03-21 00:02:52 +01:00
9d047572c8
gnu: r-gsl: Update to 2.1-5.
...
* gnu/packages/cran.scm (r-gsl): Update to 2.1-5.
2019-03-21 00:02:52 +01:00
f69ba00f09
gnu: r-coin: Update to 1.3-0.
...
* gnu/packages/cran.scm (r-coin): Update to 1.3-0.
[propagated-inputs]: Add r-libcoin and r-matrixstats.
2019-03-21 00:02:52 +01:00
c9ba1155a2
gnu: r-fs: Update to 1.2.7.
...
* gnu/packages/cran.scm (r-fs): Update to 1.2.7.
2019-03-21 00:02:51 +01:00
fef93da89d
gnu: r-ggeffects: Update to 0.9.0.
...
* gnu/packages/cran.scm (r-ggeffects): Update to 0.9.0.
[propagated-inputs]: Remove r-crayon, r-ggplot2, r-lme4, r-prediction,
r-sjstats, r-tidyr; add r-insight.
2019-03-21 00:02:51 +01:00
a3daf011cc
gnu: r-proc: Update to 1.14.0.
...
* gnu/packages/cran.scm (r-proc): Update to 1.14.0.
[propagated-inputs]: Remove r-ggplot2.
2019-03-21 00:02:51 +01:00
20b375ecd8
gnu: r-huge: Update to 1.3.1.
...
* gnu/packages/cran.scm (r-huge): Update to 1.3.1.
2019-03-21 00:02:51 +01:00
8aef1ea6fd
gnu: r-rgl: Update to 0.100.19.
...
* gnu/packages/cran.scm (r-rgl): Update to 0.100.19.
2019-03-21 00:02:51 +01:00
37317189a7
gnu: r-argparse: Update to 2.0.1.
...
* gnu/packages/cran.scm (r-argparse): Update to 2.0.1.
[propagated-inputs]: Remove r-getopt.
2019-03-21 00:02:51 +01:00
fcb8456577
gnu: r-findpython: Update to 1.0.5.
...
* gnu/packages/cran.scm (r-findpython): Update to 1.0.5.
2019-03-21 00:02:51 +01:00
31af2e7f92
gnu: r-sjmisc: Update to 2.7.9.
...
* gnu/packages/cran.scm (r-sjmisc): Update to 2.7.9.
[propagated-inputs]: Remove r-broom, r-crayon, r-stringdist, r-stringr, and
r-tidyr.
2019-03-21 00:02:51 +01:00
1adcbeda5f
gnu: r-ncdf4: Update to 1.16.1.
...
* gnu/packages/cran.scm (r-ncdf4): Update to 1.16.1.
2019-03-21 00:02:51 +01:00
5e16dff99c
gnu: r-sjlabelled: Update to 1.0.17.
...
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.0.17.
[propagated-inputs]: Remove r-broom, r-prediction, and r-snakecase; add
r-insight.
2019-03-21 00:02:51 +01:00
83bfddd1b0
gnu: r-gmp: Update to 0.5-13.5.
...
* gnu/packages/cran.scm (r-gmp): Update to 0.5-13.5.
2019-03-21 00:02:51 +01:00
ae7e6f0620
gnu: r-mcmc: Update to 0.9-6.
...
* gnu/packages/cran.scm (r-mcmc): Update to 0.9-6.
2019-03-21 00:02:51 +01:00
7e6c5ebbea
gnu: r-gamlss-dist: Update to 5.1-3.
...
* gnu/packages/cran.scm (r-gamlss-dist): Update to 5.1-3.
2019-03-21 00:02:51 +01:00
1a38c31456
gnu: r-future: Update to 1.12.0.
...
* gnu/packages/cran.scm (r-future): Update to 1.12.0.
2019-03-21 00:02:51 +01:00
5ccf16c746
gnu: r-msir: Update to 1.3.2.
...
* gnu/packages/cran.scm (r-msir): Update to 1.3.2.
[propagated-inputs]: Remove r-rgl.
2019-03-21 00:02:50 +01:00
fc82a8f577
gnu: r-e1071: Update to 1.7-1.
...
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-1.
2019-03-21 00:02:50 +01:00
6720b37810
gnu: r-purrr: Update to 0.3.2.
...
* gnu/packages/statistics.scm (r-purrr): Update to 0.3.2.
2019-03-21 00:02:50 +01:00
08859c8d27
gnu: r-mclust: Update to 5.4.3.
...
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.3.
2019-03-21 00:02:50 +01:00
c17ee12cf7
gnu: r-robustbase: Update to 0.93-4.
...
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-4.
[inputs]: Move gfortran from here...
[native-inputs]: ...to here.
2019-03-21 00:02:50 +01:00
e469e10e20
gnu: r-zip: Update to 2.0.1.
...
* gnu/packages/cran.scm (r-zip): Update to 2.0.1.
2019-03-21 00:02:50 +01:00
35fe7882a8
gnu: r-tinytex: Update to 0.11.
...
* gnu/packages/cran.scm (r-tinytex): Update to 0.11.
2019-03-21 00:02:50 +01:00
76cbfb5ad5
gnu: r-processx: Update to 3.3.0.
...
* gnu/packages/cran.scm (r-processx): Update to 3.3.0.
2019-03-21 00:02:50 +01:00
78e2973827
gnu: r-cli: Update to 1.1.0.
...
* gnu/packages/cran.scm (r-cli): Update to 1.1.0.
2019-03-21 00:02:50 +01:00
5275f9d7f9
gnu: r-ordinal: Update to 2019.3-9.
...
* gnu/packages/cran.scm (r-ordinal): Update to 2019.3-9.
2019-03-21 00:02:50 +01:00
739135b2be
gnu: r-lmoments: Update to 1.3-1.
...
* gnu/packages/cran.scm (r-lmoments): Update to 1.3-1.
[propagated-inputs]: Add r-rcpp and r-rcpparmadillo.
2019-03-21 00:02:50 +01:00
06070c0397
gnu: r-rcpp: Update to 1.0.1.
...
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.1.
2019-03-21 00:02:50 +01:00
b21eb34776
gnu: r-glue: Update to 1.3.1.
...
* gnu/packages/cran.scm (r-glue): Update to 1.3.1.
2019-03-21 00:02:50 +01:00
f9bc918b81
gnu: r-colorspace: Update to 1.4-1.
...
* gnu/packages/cran.scm (r-colorspace): Update to 1.4-1.
2019-03-21 00:02:50 +01:00
50d063b511
gnu: r-readxl: Update to 1.3.1.
...
* gnu/packages/cran.scm (r-readxl): Update to 1.3.1.
2019-03-21 00:02:50 +01:00
1d7049335f
gnu: r-rmarkdown: Update to 1.12.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.12.
2019-03-21 00:02:49 +01:00
33fba4cea8
gnu: r-rcpparmadillo: Update to 0.9.200.7.1.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.200.7.1.
[native-inputs]: Add ghc-pandoc, ghc-pandoc-citeproc, and r-rmarkdown.
2019-03-21 00:02:49 +01:00
2391e97c4d
gnu: r-httpuv: Update to 1.5.0.
...
* gnu/packages/cran.scm (r-httpuv): Update to 1.5.0.
[native-inputs]: Remove pkg-config; move r-rcpp from here...
[propagated-inputs]: ...to here; add r-r6.
2019-03-21 00:02:49 +01:00
c2b45ac578
gnu: r-diversitree: Update to 0.9-11.
...
* gnu/packages/bioinformatics.scm (r-diversitree): Update to 0.9-11.
2019-03-21 00:02:49 +01:00
1081e8266f
gnu: r-rstudioapi: Update to 0.10.
...
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.10.
2019-03-21 00:02:49 +01:00
086ca4deae
gnu: r-git2r: Update to 0.25.2.
...
* gnu/packages/statistics.scm (r-git2r): Update to 0.25.2.
2019-03-21 00:02:49 +01:00
7590441976
gnu: r-tibble: Update to 2.1.1.
...
* gnu/packages/statistics.scm (r-tibble): Update to 2.1.1.
2019-03-21 00:02:49 +01:00
86c8b2f5f5
gnu: r-knitr: Update to 1.22.
...
* gnu/packages/statistics.scm (r-knitr): Update to 1.22.
2019-03-21 00:02:49 +01:00
b6c5b0aca2
gnu: r-highr: Update to 0.8.
...
* gnu/packages/statistics.scm (r-highr): Update to 0.8.
2019-03-21 00:02:49 +01:00
1f2862b1be
gnu: r-lazyeval: Update to 0.2.2.
...
* gnu/packages/statistics.scm (r-lazyeval): Update to 0.2.2.
2019-03-21 00:02:49 +01:00
a9c8127290
gnu: r-stringi: Update to 1.4.3.
...
* gnu/packages/statistics.scm (r-stringi): Update to 1.4.3.
2019-03-21 00:02:49 +01:00
2bf224d0ca
gnu: r-permute: Update to 0.9-5.
...
* gnu/packages/statistics.scm (r-permute): Update to 0.9-5.
2019-03-21 00:02:49 +01:00
35663627fb
gnu: r-matrix: Update to 1.2-16.
...
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-16.
2019-03-21 00:02:49 +01:00
95bf4508e5
gnu: qtractor: Update to 0.9.6.
...
* gnu/packages/music.scm (qtractor): Update to 0.9.6.
2019-03-21 00:02:49 +01:00
8e91ad0b5c
gnu: r-ape: Update to 5.3.
...
* gnu/packages/cran.scm (r-ape): Update to 5.3.
2019-03-21 00:02:49 +01:00
db39269c89
gnu: r-maldiquant: Update to 1.19.2.
...
* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.19.2.
2019-03-21 00:02:49 +01:00
42f344faf7
gnu: Add r-libcoin.
...
* gnu/packages/cran.scm (r-libcoin): New variable.
2019-03-21 00:02:48 +01:00
d1021421d9
gnu: r-callr: Update to 3.2.0.
...
* gnu/packages/cran.scm (r-callr): Update to 3.2.0.
2019-03-21 00:02:48 +01:00
df04509932
gnu: r-dendextend: Update to 1.10.0.
...
* gnu/packages/cran.scm (r-dendextend): Update to 1.10.0.
2019-03-21 00:02:48 +01:00
ffd6e2fd8f
gnu: r-sys: Update to 3.1.
...
* gnu/packages/cran.scm (r-sys): Update to 3.1.
2019-03-21 00:02:48 +01:00
28d0eb2565
gnu: r-diversitree: Fix typo.
...
* gnu/packages/bioinformatics.scm (r-diversitree)[propagated-inputs]: Fix typo
in package labels.
2019-03-21 00:02:48 +01:00
d14c770d55
gnu: Add r-insight.
...
* gnu/packages/cran.scm (r-insight): New variable.
2019-03-21 00:02:48 +01:00
8b672b2c48
gnu: blender: Restore version 2.79b for systems without OpenGL 3.
...
Fixes <https://bugs.gnu.org/33882 >.
* gnu/packages/graphics.scm (blender-2.79): New variable.
(blender)[description]: Remove obsolete claim that the stable
release no longer works in Guix.
* gnu/packages/patches/blender-2.79-newer-ffmpeg.patch,
gnu/packages/patches/blender-2.79-python-3.7-fix.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2019-03-20 18:20:36 -04:00
933cc19684
gnu: r-annotationhub: Update to 2.14.5.
...
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.5.
2019-03-20 22:32:37 +01:00
e49d5d34ed
gnu: r-genomicfeatures: Update to 1.34.6.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.6.
2019-03-20 22:32:32 +01:00
2b83d218d8
gnu: r-variantannotation: Update to 1.28.13.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.13.
2019-03-20 22:32:25 +01:00
0adb6f207b
gnu: r-category: Update to 2.48.1.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.48.1.
2019-03-20 22:32:17 +01:00
e014dc78f0
gnu: r-dexseq: Update to 1.28.3.
...
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.3.
2019-03-20 22:32:11 +01:00
877fd189c4
gnu: r-annotate: Update to 1.60.1.
...
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.60.1.
2019-03-20 22:31:59 +01:00
ceab33feee
gnu: guile-wm: Compile and use canonical directories.
...
Fixes <https://bugs.gnu.org/34922 >.
* gnu/packages/guile-wm.scm (guile-wm)[arguments]: Rename "set-go-directory"
phase to "set-module-directory"; change "set-load-path" phase to wrap
executable in the correct environment variables; add phase "install-go-files".
2019-03-20 21:04:31 +01:00
6854a5d5f7
gnu: obs: Update to 23.0.2.
...
* gnu/packages/video.scm (obs): Update to 23.0.2.
2019-03-20 20:42:42 +01:00
6b455f8c55
gnu: perl-plack-middleware-methodoverride: Update to 0.20.
...
* gnu/packages/web.scm (perl-plack-middleware-methodoverride): Update to 0.20.
2019-03-20 20:42:41 +01:00
84cd5bd7f8
gnu: perl-uri-template: Update to 0.24.
...
* gnu/packages/web.scm (perl-uri-template): Update to 0.24.
2019-03-20 20:42:41 +01:00
0341fb9b68
gnu: mkfontscale: Update to 1.2.0.
...
* gnu/packages/xorg.scm (mkfontscale): Update to 1.2.0.
2019-03-20 20:42:41 +01:00
bcc27a6533
gnu: xf86-video-ati: Update to 19.0.1.
...
* gnu/packages/xorg.scm (xf86-video-ati): Update to 19.0.1.
2019-03-20 20:42:40 +01:00
cbea33132a
gnu: xf86-video-amdgpu: Update to 19.0.1.
...
* gnu/packages/xorg.scm (xf86-video-amdgpu): Update to 19.0.1.
2019-03-20 20:42:40 +01:00
c21242d920
gnu: pencil2d: Update to 0.6.3.
...
* gnu/packages/animation.scm (pencil2d): Update to 0.6.3.
2019-03-20 20:42:40 +01:00
dee92e65a2
gnu: python-colorspacious: Don't use unstable tarball.
...
* gnu/packages/python-xyz.scm (python-colorspacious)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-03-20 20:42:39 +01:00
c74da2b6c4
gnu: linux-libre: Update to 5.0.3.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.3.
(%linux-libre-hash): Update hash.
2019-03-20 15:34:16 -04:00
c65cce08b4
gnu: linux-libre@4.19: Update to 4.19.30.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.30.
(%linux-libre-4.19-hash): Update hash.
2019-03-20 15:34:14 -04:00
7cbbee4a85
gnu: linux-libre@4.14: Update to 4.14.107.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.107.
(%linux-libre-4.14-hash): Update hash.
2019-03-20 15:34:12 -04:00
c62d0e678f
gnu: linux-libre@4.9: Update to 4.9.164.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.164.
2019-03-20 15:34:09 -04:00
c16423f143
services: Add nslcd-service-type.
...
* gnu/services/authentication.scm (nslcd-service-type, nslcd-configuration,
%nslcd-accounts): New variables.
(uglify-field-name, value->string, serialize-field, serialize-list,
ssl-option?, tls-reqcert-option?, deref-option?,
comma-separated-list-of-strings?, serialize-ignore-users-option, log-option?,
serialize-log-option, valid-map?, scope-option?, serialize-scope-option,
map-entry?, list-of-map-entries?, filter-entry?, list-of-filter-entries?,
serialize-filter-entry, serialize-list-of-filter-entries, serialize-map-entry,
serialize-list-of-map-entries, nslcd-config-file, nslcd-etc-service,
nslcd-shepherd-service, pam-ldap-pam-services, pam-ldap-pam-service,
generate-nslcd-documentation): New procedures.
* gnu/tests/ldap.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* doc/guix.texi (LDAP Services): Document it.
2019-03-20 20:31:15 +01:00
bcf66fc2e7
gnu: samba: Update to 4.10.0.
...
* gnu/packages/samba.scm (samba): Update to 4.10.0.
[native-inputs]: Replace python-2 with python.
2019-03-20 20:25:51 +01:00
14e6b6a0ae
gnu: xpra: Update to 2.5.
...
* gnu/packages/xorg.scm (xpra): Update to 2.5.
2019-03-20 20:25:51 +01:00
5493320274
gnu: iproute2: Update to 5.0.0.
...
* gnu/packages/linux.scm (iproute): Update to 5.0.0.
[inputs, native-inputs]: Order alphabetically.
2019-03-20 16:21:06 +01:00
af184b68e7
gnu: 389-ds-base: Use more global directories.
...
* gnu/packages/openldap.scm (389-ds-base)[arguments]: Pass
"with-instconfigdir"; add phase "overwrite-default-locations" to overwrite
defaults for "initconfig_dir", the certificate location, and the location of
the defaults file.
2019-03-20 12:19:56 +01:00
19a0a060d2
gnu: 389-ds-base: Fix tool references.
...
* gnu/packages/openldap.scm (389-ds-base)[arguments]: Rename phase
"fix-includes" to "fix-references" and fix references to certutil and
c_rehash.
[inputs]: Add nss:bin.
2019-03-20 12:19:55 +01:00
35f9c6628f
gnu: Add adapterremoval.
...
* gnu/packages/bioinformatics.scm (adapterremoval): New variable.
2019-03-20 12:19:55 +01:00
7627bad6a7
gnu: 389-ds-base: Set localstatedir to /var.
...
* gnu/packages/openldap.scm (389-ds-base)[arguments]: Set localstatedir to
/var.
2019-03-20 12:19:55 +01:00
cbc6a28b67
gnu: 389-ds-base: Update to 1.4.0.21.
...
* gnu/packages/openldap.scm (389-ds-base): Update to 1.4.0.21.
[arguments]: Add phase "fix-includes".
[inputs]: Add cracklib.
2019-03-20 12:19:55 +01:00
3d7a7b1dd6
gnu: emacs-helm-notmuch: Update to 1.2.
...
* gnu/packages/emacs-xyz.scm (emacs-helm-notmuch): Update to 1.2.
2019-03-20 11:58:37 +01:00
7c45593b44
gnu: libinfinity: Update to 0.7.1.
...
* gnu/packages/gobby.scm (libinfinity): Update to 0.7.1.
[inputs]: Remove gtk+-2. Add gtk+.
2019-03-20 15:40:43 +05:30
6d96a4f769
gnu: icecat: Update to 60.6.0-guix1 [security-fixes].
...
Includes fixes for CVE-2018-18506, CVE-2019-9788, CVE-2019-9790,
CVE-2019-9791, CVE-2019-9792, CVE-2019-9793, CVE-2019-9794, CVE-2019-9795,
CVE-2019-9796, and CVE-2019-9801.
* gnu/packages/gnuzilla.scm (%icecat-version): Update to 60.6.0-guix1.
(icecat-source)[upstream-firefox-source]: Update hash.
2019-03-19 22:36:44 -04:00
8cf160e122
gnu: icecat: Improve computed 'icecat-source' tarball.
...
* gnu/packages/gnuzilla.scm (icecat-source): When packing the new IceCat
tarball, set the mtime of archived files to early 1980. Remove useless
'string-append' applied to one argument.
2019-03-19 22:36:37 -04:00
d17b1c0891
gnu: knot: Update to 2.8.0.
...
* gnu/packages/dns.scm (knot): Update to 2.8.0.
[source]: Add patch.
* gnu/packages/patches/knot-include-system-lmdb-header.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-03-20 00:44:57 +01:00
1c4d4196c2
gnu: cataclysm-dda: Update to 0.D.
...
* gnu/packages/games.scm (cataclysm-dda): Update to 0.D.
2019-03-19 16:18:56 -04:00
c1d6865166
gnu: gandi.cli: Update to 1.4.
...
* gnu/packages/networking.scm (gandi.cli): Update to 1.4.
2019-03-19 18:21:17 +01:00
47982ca9b0
gnu: python-ipy: Update to 1.00.
...
* gnu/packages/networking.scm (python-ipy): Update to 1.00.
2019-03-19 18:21:16 +01:00
598c2bbc53
gnu: google-brotli: Update to 1.0.7.
...
* gnu/packages/compression.scm (google-brotli): Update to 1.0.7.
2019-03-19 16:57:48 +01:00
fc82c1752e
gnu: google-brotli: Don't use unstable tarball.
...
* gnu/packages/compression.scm (google-brotli)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-03-19 16:57:47 +01:00
7f5a010b9a
gnu: perl-catalyst-plugin-session: Update to 0.41.
...
* gnu/packages/web.scm (perl-catalyst-plugin-session): Update to 0.41.
2019-03-19 16:57:47 +01:00
2f67ac377a
gnu: perl-catalyst-action-rest: Update to 1.21.
...
* gnu/packages/web.scm (perl-catalyst-action-rest): Update to 1.21.
2019-03-19 16:57:47 +01:00
96473656ad
gnu: perl-apache-logformat-compiler: Update to 0.35.
...
* gnu/packages/web.scm (perl-apache-logformat-compiler): Update to 0.35.
[native-inputs]: Replace perl-module-build with
perl-module-build-tiny.
2019-03-19 16:57:47 +01:00
Tobias Geerinckx-Rice