11879284cb
gnu: Add r-msnbase.
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* gnu/packages/bioinformatics.scm (r-msnbase): New variable.
2017-01-17 21:46:50 +01:00
6a67e181ac
gnu: Add r-pcamethods.
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* gnu/packages/bioinformatics.scm (r-pcamethods): New variable.
2017-01-17 21:46:50 +01:00
4aa7d592f1
gnu: Add r-mzid.
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* gnu/packages/bioinformatics.scm (r-mzid): New variable.
2017-01-17 21:46:50 +01:00
7c08afaf7b
gnu: Add r-vsn.
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* gnu/packages/bioinformatics.scm (r-vsn): New variable.
2017-01-17 21:46:50 +01:00
05c7e5fb76
gnu: Add r-affy.
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* gnu/packages/bioinformatics.scm (r-affy): New variable.
2017-01-17 21:46:49 +01:00
5c9d15055f
gnu: Add r-affyio.
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* gnu/packages/bioinformatics.scm (r-affyio): New variable.
2017-01-17 21:46:49 +01:00
71676a1f4c
gnu: Add r-mzr.
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* gnu/packages/bioinformatics.scm (r-mzr): New variable.
2017-01-17 21:46:49 +01:00
ae26217430
gnu: Add r-protgenerics.
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* gnu/packages/bioinformatics.scm (r-protgenerics): New variable.
2017-01-17 21:46:49 +01:00
0e7d058e44
gnu: Add r-maldiquant.
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* gnu/packages/bioinformatics.scm (r-maldiquant): New variable.
2017-01-17 21:46:49 +01:00
1f40e73cb5
gnu: Add r-raremetals2.
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* gnu/packages/bioinformatics.scm (r-raremetals2): New variable.
2017-01-17 21:46:48 +01:00
fb1e528ef1
gnu: Add r-seqminer.
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* gnu/packages/bioinformatics.scm (r-seqminer): New variable.
2017-01-17 21:46:48 +01:00
26a281ef27
gnu: Add r-compquadform.
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* gnu/packages/statistics.scm (r-compquadform): New variable.
2017-01-17 21:46:48 +01:00
769fc6bb18
gnu: Add ribodiff.
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* gnu/packages/bioinformatics.scm (ribodiff): New variable.
2017-01-17 21:46:48 +01:00
e84efc50d7
gnu: Add hisat2.
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* gnu/packages/bioinformatics.scm (hisat2): New variable.
2017-01-17 21:46:48 +01:00
5f764dd7ff
gnu: Add r-fivethirtyeight.
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* gnu/packages/statistics.scm (r-fivethirtyeight): New variable.
2017-01-17 21:46:47 +01:00
40effef7ca
gnu: powertabeditor: Update to 2.0.0-alpha9.
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* gnu/packages/music.scm (powertabeditor): Update to 2.0.0-alpha9.
[source]: Simplify snippet.
[arguments]: Adjust phases; remove unnecessary configure flag.
2017-01-17 21:46:25 +01:00
46076d08ed
Revert "gnu: cups-filters: Disable mutool integration."
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This change would cause 594 packages to be rebuilt, so it was moved to
the staging branch.
This reverts commit 58a7bbc5fe
2017-01-17 15:13:54 -05:00
cf3768fa06
gnu: webkitgtk: Update to 2.14.3 [security fixes].
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Fixes CVE-2016-{7586,7589,7592,7599,7623,7632,7635,7639,7641,7645,7652,7654,7656}.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.14.3.
2017-01-17 14:56:13 -05:00
58a7bbc5fe
gnu: cups-filters: Disable mutool integration.
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* gnu/packages/cups.scm (cups-filters)[arguments]: Add ‘--disable-mutool’
to #:configure-flags.
[inputs]: Remove mupdf.
2017-01-17 18:42:37 +01:00
16869cecf6
gnu: libpsl: Update to 0.17.0.
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* gnu/packages/web.scm (libpsl): Update to 0.17.0.
2017-01-17 18:42:36 +01:00
cdb93e50ea
gnu: proxychains-ng: Update to 4.12.
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* gnu/packages/networking.scm (proxychains-ng): Update to 4.12.
2017-01-17 18:42:34 +01:00
718c12786b
gnu: password-store: Install bash completions.
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* gnu/packages/password-utils.scm (password-store)[arguments]: Add
'install-shell-completions' phase.
2017-01-17 16:18:35 +01:00
c554c6bab8
gnu: gnucash: Update to 2.6.15.
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* gnu/packages/gnucash.scm (gnucash): Update to 2.6.15.
2017-01-17 15:07:08 +01:00
065d012511
gnu: Add proj.4.
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* gnu/packages/geo.scm (proj.4): New variable.
(gnome-maps): Use license: prefix.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-01-17 14:41:08 +01:00
f68647299c
gnu: xscreensaver: Update to 5.36.
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* gnu/packages/xdisorg.scm (xscreensaver): Update to 5.36.
2017-01-17 14:21:10 +01:00
ae6591efa5
gnu: perl-image-exiftool: Update to 10.40.
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* gnu/packages/photo.scm (perl-image-exiftool): Update to 10.40.
[synopsis, description]: Mention more capabilities.
2017-01-17 03:50:36 -05:00
265afbdfe7
gnu: ghc-quickcheck-instances: Update to 0.3.12.
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* gnu/packages/haskell.scm (ghc-quickcheck-instances): Update to 0.3.12.
[inputs]: Add ghc-scientific and ghc-vector.
2017-01-17 03:58:19 +01:00
19083a5eee
gnu: imagemagick: Update to 6.9.7-4 [security fixes].
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* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.7-4.
2017-01-16 18:39:41 -05:00
9381a02a53
gnu: Add scrypt.
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* gnu/packages/crypto.scm (scrypt): New variable.
2017-01-16 18:02:14 -05:00
ce9701fb95
gnu: Add emacs-stripe-buffer.
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* gnu/packages/emacs.scm (emacs-stripe-buffer): New variable.
2017-01-16 23:37:43 +01:00
0b35f11d76
gnu: Add emacs-git-timemachine.
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* gnu/packages/emacs.scm (emacs-git-timemachine): New variable.
2017-01-16 23:37:43 +01:00
ae21519f63
gnu: guile-sqlite3: Provide a new source URL.
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* gnu/packages/guile.scm (guile-sqlite3)[home-page]: Change.
2017-01-16 23:27:23 +01:00
384344198d
file-systems: 'file-system-needed-for-boot?' is #t for parents of the store.
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Suggested by John Darrington <john@darrington.wattle.id.au>.
* gnu/system/file-systems.scm (%not-slash): New variable.
(file-prefix?): New procedure.
(file-system-needed-for-boot?): Use it to check whether FS holds the
store.
* tests/file-systems.scm ("file-system-needed-for-boot?"): New test.
* gnu/tests/install.scm (%separate-store-os)[file-systems]: Remove
'needed-for-boot?' field for "/gnu".
2017-01-16 23:27:23 +01:00
b91cfa22e1
gnu: Add r-centipede.
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* gnu/packages/bioinformatics.scm (r-centipede): New variable.
2017-01-16 23:18:27 +01:00
1fdfbadff0
gnu: Add ocaml-lwt.
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* gnu/packages/ocaml.scm (ocaml-lwt): New variable.
2017-01-16 22:34:53 +01:00
37f17e2a1e
gnu: Add ocaml-ssl.
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* gnu/packages/ocaml.scm (ocaml-ssl): New variable.
2017-01-16 22:34:51 +01:00
1342fce102
gnu: Add ocaml-react.
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* gnu/packages/ocaml.scm (ocaml-react): New variable.
2017-01-16 22:34:48 +01:00
0a7b43a818
gnu: Add ocaml-ppx-tools.
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* gnu/packages/ocaml.scm (ocaml-ppx-tools): New variable.
2017-01-16 22:34:45 +01:00
69705efe94
gnu: Add ocaml-alcotest.
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* gnu/packages/ocaml.scm (ocaml-alcotest): New variable.
2017-01-16 22:34:42 +01:00
f46bceb670
gnu: Add ocaml-astring.
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* gnu/packages/ocaml.scm (ocaml-astring): New variable.
2017-01-16 22:34:39 +01:00
beeb2d419b
gnu: Add ocaml-fmt.
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* gnu/packages/ocaml.scm (ocaml-fmt): New variable.
2017-01-16 22:34:36 +01:00
8fe6b9327d
gnu: camlzip: Install both modules.
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* gnu/packages/ocaml.scm (camlzip) [arguments]: Install both zip and camlzip
modules.
2017-01-16 22:34:30 +01:00
138adbbe05
gnu: Add python-autopep8.
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* gnu/packages/python.scm (python-autopep8, python2-autopep8): New variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-16 22:13:21 +01:00
2f4d08ee7f
gnu: kdevelop: Set more paths in wrapper script.
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* gnu/packages/kde.scm (kdevelop)[arguments]: Add more paths in
wrap-executable: add "/share" output of kdevplatform and kcmutils to
$XDG_DATA_DIRS; add "lib/plugins" from user profile to $QT_PLUGIN_PATH.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-16 22:13:21 +01:00
fc11b0d3b2
gnu: kdevelop: Update to 5.0.3.
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* gnu/packages/kde.scm (kdevelop, kdevplatform): Update to 5.0.3.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-16 22:13:21 +01:00
0aeed5e310
grafts: Preserve the cache across recursive calls.
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Before this commit, we'd lose the cache across recursive calls to
'cumulative-grafts', which isn't great performance-wise.
This bug was already present before
d38bc9a9f6
2017-01-16 22:13:21 +01:00
90ad5c8836
grafts: Actually cache grafts during the derivation DAG traversal.
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This fixes a regression introduced in
d38bc9a9f6
2017-01-16 22:13:21 +01:00
b09903619f
gnu: linux-libre: Update to 4.9.4.
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* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.9.4.
2017-01-16 05:26:33 -05:00
8220c963e1
gnu: linux-libre@4.4: Update to 4.4.43.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.43.
2017-01-16 05:23:04 -05:00
ad1c349db0
gnu: dwm: Add '.desktop' file.
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Fixes <https://bugs.gnu.org/25438 >.
* gnu/packages/suckless.scm (dwm)[arguments]: Add
'install-xsession' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-16 11:03:46 +01:00
Ricardo Wurmus