48409ef269
gnu: infernal: Limit to i686 and x86_64 systems.
...
* gnu/packages/bioinformatics.scm (infernal)[supported-systems]: The
package requires VMX or SSE capability for parallel instructions, so
limit it to those supported systems.
2016-09-04 12:43:10 +03:00
dddcb25c7f
gnu: Add python-odfpy.
...
* gnu/packages/python.scm (python-odfpy, python2-odfpy): New variables.
Signed-off-by: Alex Kost <alezost@gmail.com>
2016-09-04 10:29:39 +03:00
c4dd0defe1
gnu: awesome: Shorten the description.
...
* gnu/packages/wm.scm (awesome)[description]: Shorten.
Signed-off-by: Alex Kost <alezost@gmail.com>
2016-09-04 10:29:39 +03:00
37355498e6
gnu: gtk: Add clipit.
...
* gnu/packages/gtk.scm (clipit): New variable.
Co-authored-by: 宋文武 <iyzsong@gmail.com>
2016-09-04 15:08:58 +08:00
69913ed0e6
Merge branch 'gtk-im-modules'
2016-09-04 08:19:10 +02:00
df90106610
gnu: aria2: Update to 1.26.1.
...
* gnu/packages/bittorrent.scm (aria2): Update to 1.26.1.
2016-09-03 23:48:46 +03:00
217e0edfdc
gnu: mpv: Update to 0.20.0.
...
* gnu/packages/video.scm (mpv): Update to 0.20.0.
2016-09-03 22:50:59 +03:00
db8b5f5262
gnu: rpcbind: Enable warm starts
...
* gnu/packages/onc-rpc.scm (rpcbind)[arguments]: Pass --enable-warmstarts
to #:configure-flags.
2016-09-03 18:07:04 +02:00
79518126e7
Revert "gnu: yelp: Update to 3.21.3"
...
This reverts commit 29405d8821
2016-09-03 16:25:47 +02:00
8c65863fb3
gnu: git: Update to 2.10.0.
...
* gnu/packages/version-control.scm (git): Update to 2.10.0.
2016-09-03 16:24:18 +02:00
fd0a23e9eb
gnu: libnfsidmap: Set pluginpath at configure time.
...
* gnu/packages/linux.scm (libnfsidmap)[arguments]: Pass --with-pluginpath=
to #:configure-flags.
2016-09-03 15:52:21 +02:00
abc4cb57ca
guix: ant-build-system: Fix pattern for collecting jar files.
...
The former pattern included the "jar" binary.
* guix/build/ant-build-system.scm (generate-classpath): Change pattern.
Suggested by: Ricardo Wurmus <rekado@elephly.net>
2016-09-03 10:36:20 +02:00
5741e3e552
doc: Fix typos.
...
* doc/guix.texi: Fix typo.
* doc/emacs.texi: Fix multiple typos.
2016-09-02 20:54:21 +03:00
35aa90a1fd
gnu: Add Infernal.
...
* gnu/packages/bioinformatics.scm (infernal): New variable.
2016-09-02 16:46:37 +02:00
d058708e86
gnu: libidn: Replace with 1.33 [fixes CVE-2015-8948 and CVE-2016-{6261,6263}].
...
* gnu/packages/libidn.scm (libidn)[replacement]: New field.
(libidn-1.33): New variable.
2016-09-02 09:52:56 -04:00
135ba811c6
gnu: python2-ipython: Use strip-python2-variant.
...
* gnu/packages/python.scm (python2-ipython): Inherit using
strip-python2-variant.
[propagated-inputs]: Remove work-around for python2-terminado.
[inputs]: Remove work-around for python2-jsonschema, python2-matplotlib,
python2-numpy, python2-requests.
(python-inputs)[properties]: New field.
2016-09-02 06:44:37 +03:00
fc1a170e65
gnu: python2-numexpr: Use strip-python2-variant.
...
* gnu/packages/python.scm (python2-numexpr): Replace package definition
with 'package-with-python2', using 'strip-python2-variant'.
2016-09-02 06:44:36 +03:00
2b031d3fc1
gnu: python2-scikit-image: Use strip-python2-variant.
...
* gnu/packages/python.scm (python2-scikit-image): Inherit using
strip-python2-variant.
[propagated-inputs]: Remove work-around for python2-matplotlib,
python2-numpy, python2-scipy.
2016-09-02 06:44:36 +03:00
7e21b9fb26
gnu: python-scikit-learn: Set source file name.
...
* gnu/packages/python.scm (python-scikit-learn)[source]: Add 'file-name'
field.
2016-09-02 06:44:36 +03:00
25a2f81f9b
gnu: python2-scikit-learn: Use strip-python2-variant.
...
* gnu/packages/python.scm (python2-scikit-learn): Replace package
definition with 'package-with-python2', using 'strip-python2-variant'
to simplify the package definition.
2016-09-02 06:44:35 +03:00
d44a618384
gnu: python-requests-mock: Update to 1.0.0.
...
* gnu/packages/openstack.scm (python-requests-mock): Update to 1.0.0.
[inputs]: Remove python-setuptools. Move python-mock ...
[native-inputs]: ... to here. Add python-discover, python-fixtures,
python-sphinx, python-testrepostory, python-testtools.
[properties]: Add python2-variant.
(python2-requests-mock): inherit stripped variant.
[native-inputs]: Use python2-setuptools.
2016-09-02 06:44:25 +03:00
bb76ef9d8b
Revert "gnu: gsl: Update to 2.2."
...
This reverts commit b16b16e6c2
2016-09-01 20:17:01 -04:00
f63e5eaaeb
gnu: dtc: Add missing symbols patch from debian.
...
* gnu/packages/u-boot.scm (dtc)[source]: Add patch.
* gnu/packages/patches/dtc-add-missing-symbols-to-lds.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: David Craven <david@craven.ch>
2016-09-02 00:16:34 +02:00
4e49163f76
guix build: Rewrite '--with-input' in terms of 'package-input-rewriting'.
...
* guix/scripts/build.scm (transform-package-inputs): Rewrite in terms of
'package-input-rewriting'.
2016-09-01 23:07:54 +02:00
2a75b0b63d
packages: Add 'package-input-rewriting'.
...
* guix/packages.scm (package-input-rewriting): New procedure.
* tests/packages.scm ("package-input-rewriting"): New test.
* doc/guix.texi (Defining Packages): Document it.
(Package Transformation Options): Add cross-reference.
2016-09-01 23:07:54 +02:00
705b971477
gnu: Fix typo in description of xfce-desktop-service.
...
* gnu/services/desktop.scm (xfce-desktop-service) abilit --> ability.
2016-09-01 17:55:49 +02:00
7e348e6c0d
gnu: Add rpcbind
...
* gnu/packages/onc-rpc.scm (rpcbind): New variable.
2016-09-01 17:55:39 +02:00
261b3da532
gnu: Add telepathy-mission-control.
...
* gnu/packages/freedesktop.scm (telepathy-mission-control): New variable.
2016-09-01 11:24:51 -04:00
71d4676069
gnu: Add u-boot.
...
* gnu/packages/u-boot.scm (u-boot, make-u-boot-package,
u-boot-vexpress_ca9x4, u-boot-malta): New variables.
Co-authored-by: David Craven <david@craven.ch>
2016-09-01 17:17:42 +02:00
d62ed73239
gnu: Add dtc.
...
* gnu/packages/u-boot.scm (dtc): New variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add file.
Co-authored-by: David Craven <david@craven.ch>
2016-09-01 17:17:42 +02:00
e5cd149f68
Update 'TODO'.
...
* TODO: Remove items about guix challenge & guix publish.
Signed-off-by: Vincent Legoll <vincent.legoll@gmail.com>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-01 14:57:03 +02:00
38c2b50354
Reinstate "services: elogind: Provide '%elogind-file-systems' by extension."
...
This reverts commit 17073dafc5
2016-09-01 14:57:03 +02:00
5fd66a37d5
gnu: slim: Move to display-managers.scm.
...
* gnu/packages/display-managers.scm: New file.
* gnu/packages/slim.scm: Delete file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
* gnu/services/xorg.scm: Likewise.
2016-09-01 14:36:49 +02:00
7060b28171
tests: hackage: Fix mock urls.
...
Followup to 18f7473504
2016-09-01 13:40:49 +03:00
307347fe1b
gnu: Fix typo in copyright notice in (gnu packages networking).
...
* gnu/packages/networking.scm: "Coypright" --> "Copyright".
2016-09-01 04:27:08 -04:00
7335ca1d71
gnu: icedtea-6: Update to 1.13.12 [security fixes].
...
Fixes CVE-2016-{3458,3485,3500,3508,3550,3606}.
* gnu/packages/java.scm (icedtea-6): Update to 1.13.12.
[source]: Remove 'icedtea-remove-overrides' patch.
[arguments]: Move ALSA header substitution to 'patch-paths' phase.
* gnu/packages/patches/icedtea-remove-overrides.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-08-31 19:04:46 -04:00
68c35ba96e
gnu: rofi: Update to 1.2.0.
...
* gnu/packages/xdisorg.scm (rofi): Update to 1.2.0.
[inputs]: Drop libx11 and add xcb-util-xrm.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-31 15:12:29 -04:00
4493a3c2ef
gnu: Add xcb-util-xrm.
...
* gnu/packages/xdisorg.scm (xcb-util-xrm): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-31 15:12:25 -04:00
a7074f47ad
gnu: wcslib: Correct formatting and grammar.
...
* gnu/packages/astronomy.scm (wcslib): Minor whitespace and grammatical
changes.
2016-08-31 20:57:23 +02:00
46a0622481
gnu: bambam: Remove wrap-binary phase.
...
Functionality provided already by python-build-system.
* gnu/packages/games.scm (bambam)[arguments]: Remove 'wrap-binary phase.
[synopsis]: Capitalize first word.
2016-08-31 12:16:19 -05:00
83ab1a812f
tests: cpan: Fix mock urls.
...
Followup to 7a62263ee5
2016-08-31 09:58:39 -05:00
7b44cae50a
services: shepherd: Add 'shepherd-service-upgrade', from 'guix system'.
...
* guix/scripts/system.scm (service-upgrade): Move to...
* gnu/services/shepherd.scm (shepherd-service-upgrade): ... here.
* tests/system.scm ("service-upgrade: nothing to do", "service-upgrade:
one unchanged, one upgraded, one new", "service-upgrade: service
depended on is not unloaded", "service-upgrade: obsolete services that
depend on each other"): Move to...
* tests/services.scm: ... here. Adjust to 'service-upgrade' rename.
2016-08-31 15:44:20 +02:00
d4f8884fdb
guix system: Do not unload services depended on.
...
Reported by Mark H Weaver <mhw@netris.org>
at <https://lists.gnu.org/archive/html/guix-devel/2016-08/msg01470.html >.
* guix/scripts/system.scm (service-upgrade)[live-service-required?]: New
procedure.
[obsolete?]: Use it.
* tests/system.scm ("service-upgrade: service depended on is not
unloaded", "service-upgrade: obsolete services that depend on each
other"): New tests.
2016-08-31 15:44:20 +02:00
6673bddc9a
services: shepherd: Parameterize 'shepherd-service-back-edges'.
...
* gnu/services/shepherd.scm (shepherd-service-back-edges): Add
#:provision and #:requirement parameter. Honor them.
2016-08-31 15:44:20 +02:00
f20a7b8696
guix system: Use 'shepherd-service-lookup-procedure' in 'service-upgrade'.
...
* guix/scripts/system.scm (service-upgrade)[essential?]: SERVICE is now
a <live-service>.
[lookup-target, lookup-live, running?, stopped, obsolete?]: New
procedures.
[to-load, to-unload]: Use them. TO-UNLOAD is now a list of
<live-service>.
(call-with-service-upgrade-info): Extract symbols from TO-UNLOAD.
* tests/system.scm ("service-upgrade: one unchanged, one upgraded, one
new"): Adjust accordingly.
2016-08-31 15:44:20 +02:00
a5d78eb64b
services: shepherd: Add 'shepherd-service-lookup-procedure'.
...
* gnu/services/shepherd.scm (shepherd-service-lookup-procedure): New
procedure.
(shepherd-service-back-edges)[provision->service]: Use it.
* tests/services.scm ("shepherd-service-lookup-procedure"): New test.
2016-08-31 15:44:20 +02:00
b8692e4696
guix system: Extract and test the service upgrade procedure.
...
* guix/scripts/system.scm (service-upgrade): New procedure, with code
from...
(call-with-service-upgrade-info): ... here. Use it.
* tests/system.scm (live-service, service-upgrade): New variables.
("service-upgrade: nothing to do", "service-upgrade: one unchanged, one
upgraded, one new"): New tests.
2016-08-31 15:44:20 +02:00
183605c853
services: herd: Provide <live-service> objects.
...
* gnu/services/herd.scm (<live-service>): New record type.
(current-services): Change to return a single value: #f or a list of
<live-service>.
* guix/scripts/system.scm (call-with-service-upgrade-info): Adjust
accordingly.
* gnu/tests/base.scm (run-basic-test)["shepherd services"]: Adjust
accordingly.
2016-08-31 15:44:19 +02:00
1bc4d0c266
doc: Fix 'ntp-service' typo.
...
Reported by Vincent Legoll <vincent.legoll@gmail.com>.
* doc/guix.texi (Networking Services): Change #:name-service to
#:servers in 'ntp-service' documentation.
2016-08-31 15:44:19 +02:00
c180533bb5
gnu: subread: Update to 1.5.1.
...
* gnu/packages/bioinformatics.scm (subread): Update to 1.5.1.
2016-08-31 15:23:03 +02:00
Efraim Flashner