ffe8c06e89
gnu: ghc-fingertree: Run tests.
...
* gnu/packages/haskell.scm (ghc-fingertree)[arguments]: Delete to run tests.
[native-inputs]: Add ghc-hunit, ghc-quickcheck, ghc-test-framework,
ghc-test-framework-hunit, and ghc-test-framework-quickcheck2.
2017-12-05 16:37:51 +01:00
35deff7286
gnu: ghc-fingertree: Update to 0.1.3.0.
...
* gnu/packages/haskell.scm (ghc-fingertree): Update to 0.1.3.0.
2017-12-05 16:37:51 +01:00
d4fd8ee4aa
gnu: ghc-fgl-arbitrary: Update to 0.2.0.3.
...
* gnu/packages/haskell.scm (ghc-fgl-arbitrary): Update to 0.2.0.3.
2017-12-05 16:37:50 +01:00
1c42bd1387
gnu: ghc-executable-path: Update to 0.0.3.1.
...
* gnu/packages/haskell.scm (ghc-executable-path): Update to 0.0.3.1.
2017-12-05 16:37:50 +01:00
e1e803881c
gnu: ghc-exceptions: Run tests.
...
* gnu/packages/haskell.scm (ghc-exceptions)[arguments]: Delete to run tests.
[native-inputs]: Add ghc-test-framework and ghc-test-framework-quickcheck2.
2017-12-05 16:37:50 +01:00
092ab12fc3
gnu: ghc-exceptions: Update to 0.8.3.
...
* gnu/packages/haskell.scm (ghc-exceptions): Update to 0.8.3.
2017-12-05 16:37:49 +01:00
56aa945e1b
gnu: ghc-enclosed-exceptions: Update to 2.0.1.
...
* gnu/packages/haskell.scm (ghc-enclosed-exceptions): Update to 2.0.1.
2017-12-05 16:37:49 +01:00
7c0e595493
gnu: ghc-dlist: Update to 0.8.0.3.
...
* gnu/packages/haskell.scm (ghc-dlist): Update to 0.8.0.3.
2017-12-05 16:37:49 +01:00
b46ebdd867
gnu: ghc-directory: Update to 1.3.1.5.
...
* gnu/packages/haskell.scm (ghc-directory): Update to 1.3.1.5.
2017-12-05 16:37:48 +01:00
59e0812966
gnu: ghc-deepseq-generics: Update to 0.2.0.0.
...
* gnu/packages/haskell.scm (ghc-deepseq-generics): Update to 0.2.0.0.
[arguments]: Delete ‘relax-ghc-prim-dependency’ phase.
2017-12-05 16:37:48 +01:00
6d39aee521
gnu: ghc-cookie: Update to 0.4.3.
...
* gnu/packages/haskell-web.scm (ghc-cookie): Update to 0.4.3.
2017-12-05 16:37:48 +01:00
ab880e6e6c
gnu: ghc-contravariant: Update to 1.4.
...
* gnu/packages/haskell.scm (ghc-contravariant): Update to 1.4.
2017-12-05 16:37:47 +01:00
bfd2ebda71
gnu: ghc-cmdargs: Update to 0.10.18.
...
* gnu/packages/haskell.scm (ghc-cmdargs): Update to 0.10.18.
2017-12-05 16:37:47 +01:00
b84908566d
gnu: ghc-cmark: Update to 0.5.6.
...
* gnu/packages/haskell.scm (ghc-cmark): Update to 0.5.6.
[description]: Update version information about bundled libcmark, and move
it to a source comment.
2017-12-05 16:37:47 +01:00
615abb9550
gnu: ghc-clock: Update to 0.7.2.
...
* gnu/packages/haskell.scm (ghc-clock): Update to 0.7.2.
2017-12-05 16:37:46 +01:00
4d9cdf3c4e
gnu: ghc-cheapskate: Expand description.
...
* gnu/packages/haskell.scm (ghc-cheapskate)[description]: Define ‘XSS’.
2017-12-05 16:37:46 +01:00
751de3d65c
gnu: ghc-cheapskate: Alphabetise inputs.
...
* gnu/packages/haskell.scm (ghc-cheapskate)[inputs]: Order alphabetically.
2017-12-05 16:37:46 +01:00
2c72272a50
gnu: ghc-chasingbottoms: Update to 1.3.1.3.
...
* gnu/packages/haskell.scm (ghc-chasingbottoms): Update to 1.3.1.3.
[source]: Remove snippet and its modules.
2017-12-05 16:37:45 +01:00
6bfcb59d02
gnu: ghc-bytestring-handle: Alphabetise inputs.
...
* gnu/packages/haskell.scm (ghc-bytestring-handle)[inputs]: Order alphabetically.
2017-12-05 16:37:45 +01:00
39bcc93283
gnu: ghc-bytestring-handle: Update to 0.1.0.6.
...
* gnu/packages/haskell.scm (ghc-bytestring-handle): Update to 0.1.0.6.
2017-12-05 16:37:45 +01:00
934dc8d2e4
gnu: ghc-bytestring-builder: Update to 0.10.8.1.0.
...
* gnu/packages/haskell.scm (ghc-bytestring-builder): Update to 0.10.8.1.0.
2017-12-05 16:37:44 +01:00
df906169d6
gnu: ghc-bytestring: Alphabetise inputs.
...
* gnu/packages/haskell.scm (ghc-bytestring)[inputs]: Order alphabetically.
2017-12-05 16:37:44 +01:00
2545c92ae5
gnu: ghc-bytestring: Update to 0.10.8.2
...
* gnu/packages/haskell.scm (ghc-bytestring): Update to 0.10.8.2
2017-12-05 16:37:44 +01:00
3433e359e4
gnu: ghc-base-compat: Update to 0.9.3.
...
* gnu/packages/haskell.scm (ghc-base-compat): Update to 0.9.3.
2017-12-05 16:37:43 +01:00
f00b85ff8d
gnu: commencement: Do not graft early bootstrap packages.
...
By definition, these packages are not depended on at run time by any of
the packages we use. Thus it does not make sense to inherit grafts.
Furthermore, those grafts would often lead to extra overhead for users
who would end up downloading those "-boot0" packages just to build
package replacements that are in fact not going to be used.
This reverts parts of f1597427f2ce27857f71https://lists.gnu.org/archive/html/guix-devel/2017-12/msg00058.html >.
* gnu/packages/commencement.scm (file-boot0, binutils-boot0): Use plain
'inherit' instead of 'package/inherit'.
2017-12-05 11:50:00 +01:00
d20b7384b7
gnu: Add clementine.
...
* gnu/packages/music.scm (clementine): New variable.
* gnu/packages/patches/clementine-use-openssl.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-12-05 08:05:06 +01:00
43925703e8
gnu: Add libmygpo-qt.
...
* gnu/packages/music.scm (libmygpo-qt): New variable.
* gnu/packages/patches/libmygpo-qt-fix-jsoncreatortest.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-12-05 08:05:06 +01:00
1fa37d1b55
gnu: bluez-alsa: Add missing file-name field.
...
* gnu/packages/audio.scm (bluez-alsa)[source]: Add file-name field.
2017-12-04 22:25:27 +02:00
dba33ca3da
gnu: Add bluez-alsa.
...
* gnu/packages/audio.scm (bluez-alsa): New variable.
2017-12-04 20:56:06 +01:00
0c45a6a4c8
gnu: Add ortp.
...
* gnu/packages/telephony.scm (ortp): New variable.
2017-12-04 20:54:37 +01:00
80e2524c9a
gnu: Add bctoolbox.
...
* gnu/packages/telephony.scm (bctoolbox): New variable.
2017-12-04 20:54:37 +01:00
a64d9d56a3
gnu: mbedtls-apache: Build shared library.
...
* gnu/packages/tls.scm (mbedtls-apache)[arguments]: Enable building of shared
library.
2017-12-04 20:54:37 +01:00
f79c3ea9ca
gnu: wayland-protocols: Update to 1.12.
...
* gnu/packages/freedesktop.scm (wayland-protocols): Update to 1.12.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-12-04 14:30:08 -05:00
b142756d9c
gnu: spice: Update to 0.14.0.
...
This is a follow-up to commit 9a187b39b7
2017-12-04 14:05:23 -05:00
982caeab6f
gnu: bazaar: Fix CVE-2017-14176.
...
* gnu/packages/patches/bazaar-CVE-2017-14176.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/version-control.scm (bazaar)[source]: Use it.
2017-12-04 13:13:11 -05:00
c7699ebeb4
gnu: git: Remove unreliable git-svn tests.
...
Reported in <https://bugs.gnu.org/29546 >
by Mark H Weaver <mhw@netris.org>.
* gnu/packages/version-control.scm (git)[arguments]: In 'patch-tests'
phase, delete three git-svn tests.
2017-12-04 16:35:43 +01:00
6de3d1762b
gnu: elixir: Update to 1.5.2 and disable failing tests.
...
* gnu/packages/elixir.scm (elixir)[origin]: Update to 1.5.2.
[arguments]: Patch the shebang of mix. Disable failing tests.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-04 10:36:48 +01:00
8cbb58918c
gnu: erlang: Update to 20.1.
...
* gnu/packages/erlang.scm (erlang): Update to 20.1.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-04 10:36:48 +01:00
78bae62a25
gnu: protobuf: Update to 3.5.0.
...
* gnu/packages/protobuf.scm (protobuf): Update to 3.5.0.
2017-12-04 08:13:55 +01:00
74327874a5
gnu: you-get: Update to 0.4.995.
...
* gnu/packages/video.scm (you-get): Update to 0.4.995.
2017-12-04 08:13:55 +01:00
1740cb779a
gnu: ghc-async: Update to 2.1.1.1.
...
* gnu/packages/haskell.scm (ghc-async): Update to 2.1.1.1.
2017-12-04 08:13:55 +01:00
8301d739fa
gnu: ghc-alex: Update to 3.2.3.
...
* gnu/packages/haskell.scm (ghc-alex): Update to 3.2.3.
[arguments]: Run tests.
2017-12-04 08:13:30 +01:00
7e95d0fda7
gnu: ghc-comonad: Remove duplicate input.
...
* gnu/packages/haskell.scm (ghc-comonad)[inputs]: Remove ghc-contravariant.
Order alphabetically to make this less likely to happen again.
2017-12-04 04:40:15 +01:00
f745999773
gnu: di: Update to 4.44.
...
* gnu/packages/admin.scm (di): Update to 4.44.
2017-12-04 04:40:15 +01:00
1d3c059bbf
gnu: eolie: Update to 0.9.13.
...
* gnu/packages/gnome.scm (eolie): Update to 0.9.13.
2017-12-04 04:40:14 +01:00
440c4273b8
gnu: coda: Update to 2.18.3.
...
* gnu/packages/maths.scm (coda): Update to 2.18.3.
2017-12-04 04:40:14 +01:00
d3cdb25d17
gnu: python-scikit-learn: Update to 0.19.1.
...
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.19.1.
2017-12-04 04:40:14 +01:00
8d7f1d7368
gnu: guix: Update snapshot to 3fb6464.
...
* gnu/packages/package-management.scm (guix): Update to 3fb6464
2017-12-04 00:08:13 +01:00
b901043604
gnu: you-get: Update to 0.4.990.
...
* gnu/packages/video.scm (you-get): Update to 0.4.990.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-12-03 23:49:56 +01:00
4bd70904c7
gnu: shepherd: Avoid "Bad file descriptor" warnings.
...
* gnu/packages/patches/shepherd-close-fds.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (shepherd)[source]: Use it.
2017-12-03 23:18:53 +01:00
98a26dc889
gnu: samplv1: Update to 0.8.5.
...
* gnu/packages/music.scm (samplv1): Update to 0.8.5.
2017-12-03 23:10:57 +01:00
54c76c2603
gnu: drumkv1: Update to 0.8.5.
...
* gnu/packages/music.scm (drumkv1): Update to 0.8.5.
2017-12-03 23:10:57 +01:00
4a7b1add2a
gnu: synthv1: Update to 0.8.5.
...
* gnu/packages/music.scm (synthv1): Update to 0.8.5.
2017-12-03 23:10:57 +01:00
d112e5a8c2
gnu: Add kallisto.
...
* gnu/packages/bioinformatics.scm (kallisto): New variable.
2017-12-03 18:38:58 +01:00
803a9d5c37
gnu: calf: Update to 0.90.0.
...
* gnu/packages/audio.scm (calf): Update to 0.90.0.
2017-12-03 18:31:48 +01:00
a4527622ee
gnu: jack-2: Update to 1.9.11-RC1.
...
* gnu/packages/audio.scm (jack-2): Update to 1.9.11-RC1.
2017-12-03 18:31:48 +01:00
952837c824
gnu: guitarix: Update to 0.36.1.
...
* gnu/packages/audio.scm (guitarix): Update to 0.36.1.
2017-12-03 18:31:48 +01:00
75bbc3c2e2
gnu: faust-2: Remove inherited phase.
...
* gnu/packages/audio.scm (faust-2)[arguments]: Remove build phase
"fix-permissions".
2017-12-03 18:31:48 +01:00
a36047422f
gnu: faust: Update to 0.9.90.
...
* gnu/packages/audio.scm (faust): Update to 0.9.90.
[source]: Download sources via git-fetch.
[arguments]: Add phase "fix-permissions".
2017-12-03 18:31:48 +01:00
518957128f
gnu: Add gst123.
...
* gnu/packages/gstreamer.scm (gst123): New variable.
2017-12-03 18:31:47 +01:00
a850cbdd43
gnu: readline: Remove obsolete post-install phase.
...
The 'strip' phase does this unconditionally now.
* gnu/packages/readline.scm (readline)[arguments]<#:phases>: Remove.
2017-12-03 17:47:18 +01:00
de3a1ac648
gnu: libunistring: Update to 0.9.8.
...
* gnu/packages/libunistring.scm (libunistring): Update to 0.9.8.
2017-12-03 16:36:43 +01:00
c6bc8e22e9
gnu: glibc: Don't use full version string in locale path.
...
This is a follow-up to commit ee3ebf1a35https://bugs.gnu.org/29537 >.
* gnu/packages/base.scm (glibc/linux)[version]: Change to 2.26.91-gaaa2eb83b8.
[source](uri): Adjust accordingly.
[arguments]: Use VERSION-MAJOR+MINOR for locales path.
(glibc-locales, glibc-utf8-locales): Likewise.
* guix/packages.scm (patch-and-repack): Likewise.
* guix/profiles.scm (ca-certificate-bundle, profile-derivation): Likewise.
2017-12-03 16:23:43 +01:00
0a3b5bb3e1
gnu: weechat: Update to 2.0.
...
* gnu/packages/irc.scm (weechat): Update to 2.0.
2017-12-03 15:39:00 +01:00
d0d666f97b
gnu: libwebp: Update to 0.6.1.
...
* gnu/packages/image.scm (libwebp): Update to 0.6.1.
2017-12-03 15:39:00 +01:00
3d0ffa6cae
gnu: git: Update to 2.15.1.
...
* gnu/packages/version-control.scm (git): Update to 2.15.1.
2017-12-03 15:39:00 +01:00
4016de5e7c
gnu: wireshark: Update to 2.4.3.
...
* gnu/packages/networking.scm (wireshark): Update to 2.4.3.
2017-12-03 15:27:23 +01:00
371193ecbf
gnu: readline: Update to 7.0.3.
...
* gnu/packages/readline.scm (patch-url, readline-patch): New procedures.
(patch-series): New macro.
(%patch-series-7.0): New variable.
(readline)[version]: Include patchlevel.
[source](uri): Adjust to version suffix.
[source](patches): Add %PATCH-SERIES-7.0.
2017-12-03 15:04:46 +01:00
993490d301
gnu: giac-xcas: Update to 1.4.9-33.
...
* gnu/packages/algebra.scm (giac-xcas): Update to 1.4.9-33.
2017-12-03 14:40:24 +01:00
8c80f8ef9b
gnu: guile-dsv: Update to 0.2.1 & correct sha256.
...
* gnu/packages/guile.scm (guile-dsv): Update to 0.2.1.
2017-12-03 14:17:46 +01:00
8c94393c6a
gnu: mescc-tools: Update to 0.3.
...
* gnu/packages/mes.scm (mescc-tools): Update to 0.3.
[supported-systems]: Remove field.
2017-12-03 08:47:28 +02:00
211e804758
gnu: u-boot: Update to 2017.11.
...
* gnu/packages/bootloaders.scm (u-boot): Update to 2017.11.
2017-12-03 08:47:28 +02:00
72f6caadcb
gnu: elogind: Add file-name for source.
...
* gnu/packages/freedesktop.scm (elogind)[source]: Add file-name field.
2017-12-02 22:41:27 +02:00
5bda082496
gnu: libuv: Update to 1.18.0.
...
* gnu/packages/libevent.scm (libuv): Update to 1.18.0.
2017-12-02 18:28:57 +01:00
5247e79e5f
gnu: youtube-dl: Update to 2017.12.02.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.12.02.
2017-12-02 16:22:49 +01:00
63f5656c78
gnu: mtr: Don't mention only ICMP ECHO.
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* gnu/packages/networking.scm (mtr)[description]: Allude to the fact that
mtr can send more than mere ICMP.
2017-12-02 16:22:49 +01:00
c85f069148
gnu: man-db: Use 'groff-minimal' at run time.
...
This reduces the closure of man-db from 175 MiB to 97 MiB.
* gnu/packages/man.scm (man-db)[native-inputs]: Add GROFF.
[inputs]: Replace GROFF with GROFF-MINIMAL.
[arguments]: #:configure-flags now refers to GROFF-MINIMAL.
Add #:disallowed-references.
2017-12-02 15:06:02 +01:00
3c97322a6e
gnu: Add groff-minimal.
...
* gnu/packages/groff.scm (groff-minimal): New variable.
2017-12-02 15:06:02 +01:00
63b31b567e
gnu: xfig: Don't ignore 'xmkmf' exit code.
...
Suggested by Mike Gerwitz <mtg@gnu.org>.
* gnu/packages/xfig.scm (xfig)[arguments]: Use 'invoke' when invoking
'xmkmf'.
2017-12-02 15:06:02 +01:00
763269f9ac
gnu: keepassxc: Update to 2.2.2.
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* password-utils.scm (keepassxc): Update to 2.2.2.
2017-12-02 13:51:14 +02:00
31e557c1d9
gnu: nss-certs: Update to 3.34.1.
...
* gnu/packages/certs.scm (nss-certs): Update to 3.34.1.
2017-12-02 02:00:07 +01:00
2e7825bc7b
gnu: guile-sly: Do not propagate Guile.
...
* gnu/packages/guile.scm (guile-sly)[propagated-inputs]: Move GUILE-2.2
to...
[inputs]: ... here.
2017-12-01 18:47:34 +01:00
27c4796ef9
gnu: tor: Update to 3.1.9 [security fixes].
...
This release contains fixes for TROVE-2017-{009,010,011,012,013}.
* gnu/packages/tor.scm (tor): Update to 3.1.9.
2017-12-01 16:45:19 +01:00
b9fb70ca65
gnu: glusterfs: Replace hardcoded FHS references.
...
* gnu/packages/patches/glusterfs-use-PATH-instead-of-hardcodes.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/file-systems.scm (glusterfs)[source]: Use it.
2017-12-01 16:41:23 +01:00
b59a8fd49a
gnu: Add mtr.
...
* gnu/packages/networking.scm (mtr): New public variable.
2017-12-01 16:11:57 +01:00
3f691f7196
gnu: ghc-blaze-builder: Update to 0.4.0.2.
...
* gnu/packages/haskell.scm (ghc-blaze-builder): Update to 0.4.0.2.
2017-12-01 16:08:59 +01:00
17c3a50dfd
gnu: ghc-asn1-types: Update to 0.3.2.
...
* gnu/packages/haskell-crypto.scm (ghc-asn1-types): Update to 0.3.2.
2017-12-01 16:08:58 +01:00
c24bfc3d2c
gnu: ghc-asn1-encoding: Update to 0.9.5.
...
* gnu/packages/haskell-crypto.scm (ghc-asn1-encoding): Update to 0.9.5.
2017-12-01 16:08:58 +01:00
92cd94648c
gnu: ghc-array: Update to 0.5.2.0.
...
* gnu/packages/haskell.scm (ghc-array): Update to 0.5.2.0.
2017-12-01 16:08:58 +01:00
1a1cf03f24
gnu: ghc-aeson-qq: Update to 0.8.2.
...
* gnu/packages/haskell-web.scm (ghc-aeson-qq): Update to 0.8.2.
2017-12-01 16:08:58 +01:00
f4548394d4
gnu: java: Fix several synopses & descriptions.
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* gnu/packages/java.scm (java-plexus-classworlds)[description]: Fix typo and
use @code.
(java-plexus-container-default-bootstrap)[synopsis]: Hyphenate for clarity,
as done in the description.
[description]: Fix typo and use @dfn.
(java-jmh)[description]: Fix typo.
(java-xerial-core)[synopsis, description]: Fix typos.
2017-12-01 16:08:57 +01:00
c7ffbfe9f9
gnu: guile: Add version 2.2.3.
...
* gnu/packages/guile.scm (guile-2.2.3): New variable.
2017-12-01 16:00:15 +01:00
8ad4f0aa31
gnu: gnome-default-applications: Add Evince for PDF and PS.
...
* gnu/packages/gnome.scm (gnome-default-applications)[propagated-inputs]:
Add EVINCE.
[arguments]: Associate Evince with application/pdf and
application/postscript.
2017-12-01 16:00:14 +01:00
e695d79dc6
gnu: ghc-edisoncore: Fix typo in synopsis.
...
* gnu/packages/haskell.scm (ghc-edisoncore)[synopsis]: Fix typo.
2017-12-01 15:03:13 +01:00
fb5569b0c8
gnu: man-pages: Update to 4.14.
...
* gnu/packages/man.scm (man-pages): Update to 4.14.
2017-12-01 15:03:12 +01:00
f1de0e37d5
gnu: openfoam: Clean up to reduce closure.
...
This saves ~1GB.
* gnu/packages/simulation.scm (openfoam)[outputs]: Add debug.
[arguments]: Clean up .o and src after build.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-01 11:28:48 +01:00
6101cad4d1
gnu: Add geomyidae.
...
* gnu/packages/web.scm (geomyidae): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-01 11:28:48 +01:00
491cbd3553
gnu: Add emacs-evil-matchit.
...
* gnu/packages/emacs.scm (emacs-evil-matchit): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-01 11:28:48 +01:00
c03ba83c17
gnu: git: Run tests sequentially.
...
Fixes <https://bugs.gnu.org/29512 >.
Reported by George myglc2 Clemmer <myglc2@gmail.com>.
* gnu/packages/version-control.scm (git)[arguments]: Add
#:parallel-tests?.
2017-12-01 11:28:48 +01:00
f8446df663
gnu: elogind: Remove "uaccess" tag usage in "seat-late" rules.
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* gnu/packages/freedesktop.scm (elogind)[arguments]: Add
'remove-uaccess-tag' phase.
2017-12-01 11:28:48 +01:00
1776d5cd18
gnu: linux-libre: Update to 4.14.3.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.3.
(%linux-libre-hash): Update hash.
2017-12-01 01:37:08 -05:00
6850c9ced5
gnu: linux-libre@4.9: Update to 4.9.66.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.66.
2017-12-01 01:36:21 -05:00
8b8600022c
gnu: linux-libre@4.4: Update to 4.4.103.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.103.
2017-12-01 01:35:44 -05:00
2fc4709368
gnu: libtiff: Update to 4.0.9.
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* gnu/packages/image.scm (libtiff): Update to 4.0.9.
[source]: Remove obsolete patches.
* gnu/packages/patches/libtiff-CVE-2016-10688.patch,
gnu/packages/patches/libtiff-CVE-2017-9936.patch,
gnu/packages/patches/libtiff-tiffgetfield-bugs.patch,
gnu/packages/patches/libtiff-tiffycbcrtorgb-integer-overflow.patch,
gnu/packages/patches/libtiff-tiffycbcrtorgbinit-integer-overflow.patch: Delete
files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-11-30 16:35:44 -05:00
34a28c13f5
gnu: qemu: Enable seccomp support.
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* gnu/packages/virtualization.scm (qemu)[inputs]: Add libseccomp.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-30 18:14:57 +01:00
e33904336f
gnu: fish-guix: Update to 0.1.2.1.
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* gnu/packages/shells.scm (fish-guix): Update to 0.1.2.1.
(license): Switch to bsd-3.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-30 18:14:57 +01:00
1d0865c19a
gnu: monero-core: Fix missing dependency.
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* gnu/packages/finance.scm (monero-core)[inputs]: Add readline.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-30 18:14:57 +01:00
1d752e4345
gnu: Add xautolock.
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* gnu/packages/xdisorg.scm (xautolock): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-30 18:14:56 +01:00
117d8cc40e
gnu: jellyfish: Update to 2.2.7.
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* gnu/packages/bioinformatics.scm (jellyfish): Update to 2.2.7.
[native-inputs]: Add pkg-config.
[inputs]: Add htslib.
2017-11-30 17:38:36 +01:00
f1b90a2b58
gnu: r-bigmemory: Update to 4.5.31.
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* gnu/packages/statistics.scm (r-bigmemory): Update to 4.5.31.
[propagated-inputs]: Remove r-r-utils.
2017-11-30 17:28:27 +01:00
b50a4b1391
gnu: r-cowplot: Update to 0.9.1.
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* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.1.
[propagated-inputs]: Add r-scales.
2017-11-30 17:28:27 +01:00
a3ae2fa537
gnu: r-rcppprogress: Update to 0.4.
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* gnu/packages/statistics.scm (r-rcppprogress): Update to 0.4.
[propagated-inputs]: Add r-devtools.
2017-11-30 17:28:26 +01:00
0382d37734
gnu: r-rmarkdown: Update to 1.8.
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* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.8.
[propagated-inputs]: Remove r-catools; add r-mime and r-stringr.
2017-11-30 17:28:26 +01:00
e35cac9581
gnu: r-batchjobs: Update to 1.7.
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* gnu/packages/statistics.scm (r-batchjobs): Update to 1.7.
[propagated-inputs]: Add r-backports, r-data-table, and r-stringi; remove
r-fail and r-stringr.
2017-11-30 17:28:25 +01:00
05fd8e6b46
gnu: r-pracma: Update to 2.1.1.
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* gnu/packages/maths.scm (r-pracma): Update to 2.1.1.
2017-11-30 17:28:24 +01:00
9b8d02011f
gnu: r-annotationhub: Update to 2.10.1.
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* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.10.1.
2017-11-30 17:28:24 +01:00
87e91a9fff
gnu: r-msnid: Update to 1.12.1.
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* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.12.1.
2017-11-30 17:28:23 +01:00
439492654b
gnu: r-maldiquant: Update to 1.17.
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* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.17.
2017-11-30 17:28:23 +01:00
06e8e0fc6c
gnu: r-genomicalignments: Update to 1.14.1.
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* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.14.1.
2017-11-30 17:28:22 +01:00
1ce5d32b49
gnu: r-limma: Update to 3.34.2.
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* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.2.
2017-11-30 17:28:22 +01:00
8131cf4162
gnu: r-variantannotation: Update to 1.24.2.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.24.2.
2017-11-30 17:28:21 +01:00
d2081a17ed
gnu: r-getopt: Update to 1.20.1.
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* gnu/packages/bioinformatics.scm (r-getopt): Update to 1.20.1.
2017-11-30 17:28:20 +01:00
4220ab0c81
gnu: r-gseabase: Update to 1.40.1.
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* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.40.1.
2017-11-30 17:28:20 +01:00
d259932ca8
gnu: r-dexseq: Update to 1.24.1.
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* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.1.
2017-11-30 17:28:19 +01:00
058644c0f2
gnu: r-deseq2: Update to 1.18.1.
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* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.18.1.
2017-11-30 17:28:18 +01:00
654c29aceb
gnu: r-annotate: Update to 1.56.1.
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* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.56.1.
2017-11-30 17:28:18 +01:00
814fd32670
gnu: r-circlize: Update to 0.4.2.
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* gnu/packages/cran.scm (r-circlize): Update to 0.4.2.
2017-11-30 17:28:17 +01:00
d76f987c42
gnu: r-rcpp: Update to 0.12.14.
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* gnu/packages/cran.scm (r-rcpp): Update to 0.12.14.
2017-11-30 17:28:17 +01:00
26007cd5ee
gnu: r-timedate: Update to 3042.101.
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* gnu/packages/cran.scm (r-timedate): Update to 3042.101.
2017-11-30 17:28:16 +01:00
87313f64d9
gnu: r-stringi: Update to 1.1.6.
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* gnu/packages/statistics.scm (r-stringi): Update to 1.1.6.
2017-11-30 17:28:16 +01:00
3e11bddcc7
gnu: r-devtools: Update to 1.13.4.
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* gnu/packages/statistics.scm (r-devtools): Update to 1.13.4.
2017-11-30 17:28:15 +01:00
20b0f8a5ec
gnu: r-mclust: Update to 5.4.
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* gnu/packages/statistics.scm (r-mclust): Update to 5.4.
2017-11-30 17:28:15 +01:00
6d4aed8d98
gnu: r-rcppeigen: Update to 0.3.3.3.1.
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* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.1.
2017-11-30 17:28:14 +01:00
a0a3184925
gnu: r-car: Update to 2.1-6.
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* gnu/packages/statistics.scm (r-car): Update to 2.1-6.
2017-11-30 17:28:14 +01:00
c8fb593502
gnu: r-sn: Update to 1.5-1.
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* gnu/packages/statistics.scm (r-sn): Update to 1.5-1.
2017-11-30 17:28:13 +01:00
b796f9e6be
gnu: r-openssl: Update to 0.9.9.
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* gnu/packages/statistics.scm (r-openssl): Update to 0.9.9.
2017-11-30 17:28:13 +01:00
09c0107f75
gnu: r-hms: Update to 0.4.0.
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* gnu/packages/statistics.scm (r-hms): Update to 0.4.0.
[propagated-inputs]: Add r-rlang and r-pkgconfig.
2017-11-30 17:28:12 +01:00
6c84c735a5
gnu: r-dendextend: Update to 1.6.0.
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* gnu/packages/cran.scm (r-dendextend): Update to 1.6.0.
2017-11-30 17:28:12 +01:00
18a11c6d62
gnu: r-recipes: Update to 0.1.1.
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* gnu/packages/cran.scm (r-recipes): Update to 0.1.1.
[propagated-inputs]: Add r-broom and r-matrix.
2017-11-30 17:28:11 +01:00
6c8c8c6b75
gnu: Add r-broom.
...
* gnu/packages/cran.scm (r-broom): New variable.
2017-11-30 17:28:10 +01:00
cdc129dc53
gnu: Add r-psych.
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* gnu/packages/cran.scm (r-psych): New variable.
2017-11-30 17:28:10 +01:00
6e385b76e6
gnu: mongodb: Use scons-build-system.
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* gnu/packages/databases.scm (mongodb): Switch to scons-build-system.
2017-11-30 18:21:23 +05:30
bc27eb3b56
gnu: klick: Use scons-build-system.
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* gnu/packages/music.scm (klick): Switch to scons-build-system.
2017-11-30 18:19:32 +05:30
3f3f8f494e
gnu: pingus: Use scons-build-system.
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* gnu/packages/games.scm (pingus): Switch to scons-build-system.
2017-11-30 18:19:32 +05:30
92b51d127f
gnu: godot: Use scons-build-system.
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* gnu/packages/game-development.scm (godot): Switch to scons-build-system.
2017-11-30 18:19:32 +05:30
9364a520ce
gnu: metabat: Use scons-build-system.
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* gnu/packages/bioinformatics.scm (metabat): Switch to scons-build-system.
2017-11-30 18:19:32 +05:30
82cc8253de
gnu: serf: Use scons-build-system.
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* gnu/packages/web.scm (serf): Switch to scons-build-system.
2017-11-30 18:19:32 +05:30
2235abb2a2
gnu: gpick: Use scons-build-system.
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* gnu/packages/image.scm (gpick): Switch to scons-build-system.
2017-11-30 18:19:31 +05:30
2b1a5ed854
gnu: linuxdcpp: Use scons-build-system.
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* gnu/packages/direct-connect.scm (linuxdcpp): Switch to scons-build-system.
2017-11-30 18:19:31 +05:30
bf630276a1
gnu: scons: Update to 3.0.1.
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* gnu/packages/python.scm (scons): Update to 3.0.1.
(scons-python2): New variable.
2017-11-30 18:18:47 +05:30
Tobias Geerinckx-Rice