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35571 Commits

Author SHA1 Message Date
Ricardo Wurmus 7b18fac45b
gnu: r-survey: Update to 3.36. 
* gnu/packages/cran.scm (r-survey): Update to 3.36.
[propagated-inputs]: Add r-mitools.
 2019-04-27 12:03:13 +02:00
Ricardo Wurmus 779174e4bb
gnu: r-ordinal: Update to 2019.4-25. 
* gnu/packages/cran.scm (r-ordinal): Update to 2019.4-25.
 2019-04-27 12:03:13 +02:00
Ricardo Wurmus 9c4f118bf7
gnu: Add r-mitools. 
* gnu/packages/cran.scm (r-mitools): New variable.
 2019-04-27 12:03:10 +02:00
Clément Lassieur 747c8f2a20
gnu: mozjs-38: Fix URI. 
* gnu/packages/gnuzilla.scm (mozjs-38): Fix URI.
 2019-04-27 11:59:49 +02:00
Rutger Helling 816014d39d
gnu: wine-staging: Update to 4.7. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.7.
* gnu/packages/wine.scm (wine-staging): Update to 4.7.
 2019-04-27 11:33:23 +02:00
Julien Lepiller b05290380f
gnu: ocaml-ppxlib: Update to 0.6.0. 
* gnu/packages/ocaml.scm (ocaml-ppxlib): Update to 0.6.0.
(dune): Update to 1.9.1.
 2019-04-26 23:57:00 +02:00
Julien Lepiller cf338cc305
gnu: ocaml-migrate-parsetree: Add upstream-name. 
* gnu/packages/ocaml.scm (ocaml-migrate-parsetree)[properties]: New
field.
 2019-04-26 23:35:24 +02:00
Julien Lepiller b7ebcb043c
gnu: ocaml-ppx-expect: Update to 0.12.0. 
* gnu/packages/ocaml.scm (ocaml-ppx-inline-test): Update to 0.12.0.
(ocaml-ppx-expect): Update to 0.12.0.
 2019-04-26 23:35:19 +02:00
Julien Lepiller ee33e415e7
gnu: ocaml-frontc: Add upstream-name. 
* gnu/packages/ocaml.scm (ocaml-frontc)[properties]: New field.
 2019-04-26 23:35:17 +02:00
Julien Lepiller d4857001a1
gnu: ocaml-ppx-tools: Add upstream-name. 
* gnu/packages/ocaml.scm (ocaml-ppx-tools)[properties]: New field.
 2019-04-26 23:35:15 +02:00
Julien Lepiller f08b235dab
gnu: ocaml-lwt-log: Add upstream-name. 
* gnu/packages/ocaml.scm (ocaml-lwt-log)[properties]: New field.
 2019-04-26 23:35:13 +02:00
Julien Lepiller c949a4eb1f
gnu: ocaml-ppx-tools-versioned: Add upstream-name. 
* gnu/packages/ocaml.scm (ocaml-ppx-tools-versioned)[properties]: New
field.
 2019-04-26 23:35:11 +02:00
Julien Lepiller d9faae6254
gnu: ocaml-compiler-libs: Add upstream name. 
* gnu/packages/ocaml.scm (ocaml-compiler-libs)[properties]: New field.
 2019-04-26 23:35:08 +02:00
Julien Lepiller 1e5937c8c0
gnu: ocaml-ppx-derivers: Update to 1.2.1. 
* gnu/packages/ocaml.scm (ocaml-ppx-derivers): Update to 1.2.1.
 2019-04-26 23:35:03 +02:00
Julien Lepiller 1e8439de27
gnu: ocaml-pcre: Update to 7.4.1. 
* gnu/packages/ocaml.scm (ocaml-pcre): Update to 7.4.1.
[build-system]: Use dune-build-system.
[source]: Use git-fetch.
 2019-04-26 23:34:59 +02:00
Julien Lepiller acb98ad956
gnu: ocaml-stringext: Update to 1.5.0. 
* gnu/packages/ocaml.scm (ocaml-stringext): Update to 1.5.0.
[source]: Use git-fetch.
[build-system]: Use dune-build-system.
 2019-04-26 23:34:54 +02:00
Julien Lepiller 09cd92a983
gnu: ocaml-zarith: Update to 1.7. 
* gnu/packages/ocaml.scm (ocaml-zarith): Update to 1.7.
[source]: Use git-fetch.
 2019-04-26 23:34:41 +02:00
Julien Lepiller eddfd11d70
gnu: ocaml-topkg: Update to 1.0.0. 
* gnu/packages/ocaml.scm (ocaml-topkg): Update to 1.0.0.
 2019-04-26 23:34:31 +02:00
Julien Lepiller 853af25ecd
gnu: ocaml-mtime: Update to 1.1.0. 
* gnu/packages/ocaml.scm (ocaml-mtime): Update to 1.1.0.
 2019-04-26 23:34:26 +02:00
Julien Lepiller 3f59ecfcb5
gnu: ocaml-qcheck: Update to 0.9. 
* gnu/packages/ocaml.scm (ocaml-qcheck): Update to 0.9.
 2019-04-26 23:34:10 +02:00
Ricardo Wurmus 152cbc3ca5
gnu: r-with-tests: Update to 3.6.0. 
* gnu/packages/statistics.scm (r-with-tests): Update to 3.6.0.
[arguments]: Adjust "build-reproducibly" phase.
[native-inputs]: Add a texlive-union consisting of texlive-fonts-amsfonts,
texlive-fonts-ec, texlive-latex-amsfonts, texlive-latex-base,
texlive-latex-fancyvrb, texlive-latex-graphics, texlive-latex-hyperref,
texlive-latex-oberdiek, texlive-latex-tools, texlive-latex-upquote, and
texlive-latex-url.
 2019-04-26 21:00:41 +02:00
Ricardo Wurmus 7f55904558
gnu: Add umi-tools. 
* gnu/packages/bioinformatics.scm (umi-tools): New variable.
 2019-04-26 21:00:37 +02:00
Timothy Sample 8caa458953
gnu: gdm: Install a placeholder desktop entry. 
This fixes <https://bugs.gnu.org/35068>.

* gnu/packages/gnome.scm (gdm)[arguments]: Add a phase that installs a
placeholder desktop entry file.

Co-authored-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-26 13:57:39 -04:00
Leo Famulari 8597aecb84
gnu: MPD: Update to 0.21.8. 
* gnu/packages/mpd.scm (mpd): Update to 0.21.8.
 2019-04-26 13:36:59 -04:00
Nicolas Goaziou 936a4f4371
gnu: mame: Update to 0.209. 
* gnu/packages/emulators.scm (mame): Update to 0.209.
 2019-04-26 18:54:16 +02:00
Julien Lepiller 273ba2552b
gnu: ocaml-integers: Update to 0.3.0. 
* gnu/packages/ocaml.scm (ocaml-integers): Update to 0.3.0.
 2019-04-26 18:29:02 +02:00
Julien Lepiller 12c3f62ab2
gnu: ocaml-easy-format: Update to 1.3.1. 
* gnu/packages/ocaml.scm (ocaml-easy-format): Update to 1.3.1.
[build-system]: Use dune-build-system.
[source]: Use git-fetch.
 2019-04-26 18:28:58 +02:00
Julien Lepiller 7e49538483
gnu: ocaml-fpath: Update to 0.7.2. 
* gnu/packages/ocaml.scm (ocaml-fpath): Update to 0.7.2.
 2019-04-26 18:28:54 +02:00
Julien Lepiller b858c5ac39
gnu: ocaml-ssl: Update to 0.5.7. 
* gnu/packages/ocaml.scm (ocaml-ssl): Update to 0.5.7.
 2019-04-26 18:28:49 +02:00
Julien Lepiller 44b8507d5e
gnu: ocaml-octavius: Update to 1.2.1. 
* gnu/packages/ocaml.scm (ocaml-octavius): Update to 1.2.1.
 2019-04-26 18:28:46 +02:00
Julien Lepiller 22cd6a1d4f
gnu: ocaml-result: Update to 1.3. 
* gnu/packages/ocaml.scm (ocaml-result): Update to 1.3.
[build-system]: Use dune-build-system.
[source]: Use git-fetch.
 2019-04-26 18:28:42 +02:00
Julien Lepiller 5cb40adaa2
gnu: ocaml-utop: Update to 2.3.0. 
* gnu/packages/ocaml.scm (ocaml-utop): Update to 2.3.0.
 2019-04-26 18:28:25 +02:00
Ludovic Courtès a9a0790376
gnu: xfdesktop: Stick a Guix logo in the background image. 
* gnu/packages/xfce.scm (xfdesktop)[source](modules, snippet): New
fields.
[arguments]: New field.
[native-inputs]: Add INKSCAPE and IMAGEMAGICK.
 2019-04-26 18:23:56 +02:00
Tobias Geerinckx-Rice 7342923d98
gnu: wgetpaste: Add and use wget input. 
This package has but one purpose; late binding's overkill.

* gnu/packages/wget.scm (wgetpaste)[arguments]: Add ‘use-inputs’ phase.
[inputs]: Add wget.
 2019-04-26 04:36:02 +02:00
Tobias Geerinckx-Rice 4f7db08571
gnu: hcxdumptool: Update to 5.1.4. 
* gnu/packages/networking.scm (hcxdumptool): Update to 5.1.4.
 2019-04-26 00:58:16 +02:00
Tobias Geerinckx-Rice 03c443ce8f
gnu: hcxtools: Update to 5.1.4. 
* gnu/packages/networking.scm (hcxtools): Update to 5.1.4.
 2019-04-26 00:58:06 +02:00
Tobias Geerinckx-Rice 55036ddc9a
gnu: soundtouch: Update to 2.1.1. 
* gnu/packages/audio.scm (soundtouch): Update to 2.1.1.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
Remove patches.
* gnu/packages/patches/soundtouch-CVE-2018-1000223.patch,
gnu/packages/patches/soundtouch-CVE-2018-14044-14045.patch:
Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2019-04-26 00:56:32 +02:00
Tobias Geerinckx-Rice 88507036f6
gnu: tmux-xpanes: Update to 4.1.0. 
* gnu/packages/tmux.scm (tmux-xpanes): Update to 4.1.0.
 2019-04-26 00:54:00 +02:00
Arun Isaac 9be92490b5
gnu: librepcb: Update to 0.1.1. 
* gnu/packages/engineering.scm (librepcb): Update to 0.1.1.
 2019-04-26 01:58:30 +05:30
Leo Famulari ca3cf2d58e
gnu: tmux: Update to 2.9. 
* gnu/packages/tmux.scm (tmux): Update to 2.9.
 2019-04-25 13:57:09 -04:00
Julien Lepiller c3634df2a4
gnu: ocaml@4.02: Remove the package, affected by a CVE, and its dependent 
packages.

This fixes <https://bugs.gnu.org/27462>.

* gnu/packages/ocaml.scm (ocaml-4.02, camlp4-4.02, ocaml4.02-menhir)
(ocaml4.02-lablgtk, ocaml4.02-findlib, ocaml4.02-ounit)
(ocaml4.02-camlzip, ocaml4.02-ocamlmod, ocaml4.02-zarith)
(ocaml4.02-qcheck, ocaml4.02-qtest, ocaml4.02-stringext)
(ocaml4.02-bisect, ocaml4.02-bitstring, ocaml4.02-result)
(ocaml4.02-topkg, ocaml4.02-rresult, ocaml4.02-sqlite3, ocaml4.02-csv)
(ocaml4.02-mtime, ocaml4.02-cmdliner, ocaml4.02-fmt, ocaml4.02-astring)
(ocaml4.02-alcotest, ocaml4.02-ppx-tools, ocaml4.02-react, ocaml4.02-ssl)
(ocaml4.02-lwt, ocaml4.02-lwt-log, ocaml4.02-logs, ocaml4.02-fpath)
(ocaml4.02-bos, ocaml4.02-xmlm, ocaml4.02-ulex, ocaml4.02-uchar)
(ocaml4.02-uutf, ocaml4.02-jsonm, ocaml4.02-ocurl, ocaml4.02-base64)
(ocaml4.02-omake, ocaml4.02-batteries, ocaml4.02-pcre, ocaml4.02-oasis)
(ocaml4.02-js-build-tools, ocaml4.02-bin-prot, ocaml4.02-fieldslib)
(ocaml4.02-ppx-core, ocaml4.02-ppx-optcomp, ocaml4.02-ppx-driver)
(ocaml4.02-cppo, ocaml4.02-ppx-deriving, ocaml4.02-ppx-type-conv)
(ocaml4.02-ppx-inline-test, ocaml4.02-ppx-bench, ocaml4.02-ppx-compare)
(ocaml4.02-sexplib, ocaml4.02-typerep, ocaml4.02-variantslib)
(ocaml4.02-ppx-sexp-conv, ocaml4.02-ppx-variants-conv)
(ocaml4.02-ppx-here, ocaml4.02-ppx-assert, ocaml4.02-ppx-enumerate)
(ocaml4.02-ppx-let, ocaml4.02-ppx-typerep-conv, ocaml4.02-ppx-sexp-value)
(ocaml4.02-ppx-pipebang, ocaml4.02-ppx-bin-prot, ocaml4.02-ppx-fail)
(ocaml4.02-ppx-custom-printf, ocaml4.02-ppx-sexp-message)
(ocaml4.02-ppx-fields-conv, ocaml4.02-seq, ocaml4.02-re)
(ocaml4.02-ppx-expect, ocaml4.02-ppx-jane, ocaml4.02-core-kernel)
(ocaml4.02-async-kernel, ocaml4.02-async-rpc-kernel, ocaml4.02-core)
(ocaml4.02-async-unix, ocaml4.02-async-extra, ocaml4.02-async)
(ocaml4.02-ocplib-endian, ocaml4.02-easy-format, optcomp)
(ocaml4.02-piqilib, ocaml4.02-uuidm, ocaml4.02-graph, ocaml4.02-piqi)
(ocaml4.02-camomile, ocaml4.02-zed, ocaml4.02-lambda-term): Remove variables.
* guix/build-system/ocaml.scm (default-ocaml4.02)
(default-ocaml4.02-findlib, package-with-ocaml4.02)
(strip-ocaml4.02-variant): Remove variables.
 2019-04-25 19:01:31 +02:00
Julien Lepiller 6e49426761
gnu: ocamlify: Downgrade to 0.0.1. 
Version 0.0.2 cannot be built with the latest OCaml, whereas this
version does.  This is also the version used by opam.

* gnu/packages/ocaml.scm (ocamlify): Downgrade to 0.0.1.
[arguments]: Do not use ocaml-4.02.
 2019-04-25 19:01:05 +02:00
Julien Lepiller 0705f389d1
gnu: Remove ocaml-jbuilder. 
Jbuilder is deprecated and replaced by dune.

* gnu/packages/ocaml.scm (ocaml-jbuilder): Remove variable.
(ocaml-zed, ocaml-utop): Use dune-build-system.
 2019-04-25 19:00:48 +02:00
Julien Lepiller bbe9915b30
gnu: bap: Update to 1.6.0. 
* gnu/packages/ocaml.scm (bap): Update to 1.6.0.
(ocaml-frontc): Update to 3.4.1.
(ocaml-fileutils, ocaml-cstruct, ocaml-hex, ocaml-ezjsonm, ocaml-uri):
New variables.
(ocaml4.02-fileutils, ocaml4.02-cstruct, ocaml4.02-hex,
ocaml4.02-ezjsonm, ocaml4.02-uri): Remove variables.
 2019-04-25 19:00:25 +02:00
Julien Lepiller ce9a30e6f4
gnu: Add ocaml-bigarray-compat. 
* gnu/packages/ocaml.scm (ocaml-bigarray-compat): New variable.
 2019-04-25 18:59:55 +02:00
Ricardo Wurmus cd8dce8ac4
gnu: gnome-shell: Add gdk-pixbuf+svg to inputs. 
Fixes <https://bugs.gnu.org/34124>.

* gnu/packages/gnome.scm (gnome-shell)[inputs]: Add gdk-pixbuf+svg.
[arguments]: Add the lib directory of gdk-pixbuf+svg to the LD_LIBRARY_PATH
wrapper of the gnome-shell executable.
 2019-04-25 15:30:07 +02:00
Nicolas Goaziou 92e1e0ec4b
gnu: fltk: Update to 1.3.5. 
* gnu/packages/fltk.scm (fltk): Update to 1.3.5.
 2019-04-25 14:59:16 +02:00
Chris Marusich 4728806185
gnu: Add python-yubikey-manager and python2-yubikey-manager. 
* gnu/packages/security-token.scm (python-yubikey-manager)
(python2-yubikey-manager): New variables.
 2019-04-24 21:08:39 -07:00
Chris Marusich 5297e97599
gnu: Add python-fido2 and python2-fido2. 
* gnu/packages/security-token.scm (python-fido2, python2-fido2): New
variables.
 2019-04-24 21:08:39 -07:00
Chris Marusich 41553c90e4
gnu: Add public-suffix-list. 
* gnu/packages/dns.scm (public-suffix-list): New variable.
 2019-04-24 21:08:39 -07:00
Chris Marusich 5f7d151c77
gnu: Add libu2f-host. 
* gnu/packages/security-token.scm (libu2f-host): New variable.
 2019-04-24 21:08:39 -07:00
Chris Marusich 404037f83d
gnu: Add python-pyscard and python2-pyscard. 
* gnu/packages/security-token.scm (python-pyscard, python2-pyscard): New
variables.
 2019-04-24 21:08:38 -07:00
Chris Marusich 968e86bd93
gnu: Add python-pyfakefs and python2-pyfakefs. 
* gnu/packages/patches/python-pyfakefs-remove-bad-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add the patch.
* gnu/packages/check.scm (python-pyfakefs, python2-pyfakefs): New
  variables.
 2019-04-24 21:08:36 -07:00
Tobias Geerinckx-Rice 0406434baa
gnu: bind: Update to 9.12.4-P1 [fixes CVE-2018-5743, CVE-2019-6467]. 
* gnu/packages/dns.scm (isc-bind): Update to 9.12.4-P1.
[source]: Add patch.
[inputs]: Add python and python-ply.
* packages/patches/bind-fix-unused-pk11-ecc-constants.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-04-25 04:42:17 +02:00
Tobias Geerinckx-Rice 9b19734c50
gnu: r-yamss: Fix typo in description. 
* gnu/packages/bioconductor.scm (r-yamss)[description]: Fix typo.
 2019-04-25 04:42:16 +02:00
Tobias Geerinckx-Rice 61985d650b
gnu: python-dill: Fix typo in description. 
* gnu/packages/python-xyz.scm (python-dill)[description]: Fix typo.
 2019-04-25 04:42:16 +02:00
Tobias Geerinckx-Rice 52beae7b8a
gnu, guix: Yearly ritual purging of the filesystems. 
* gnu/packages/android.scm (android-ext4-utils)[synopsis]: Fix ‘file
system’ spelling.
* gnu/packages/disk.scm (rmlint)[synopsis, description]: Likewise.
* gnu/packages/golang.scm (go-github-com-kr-fs)[synopsis, description]:
Likewise & edit for grammar.
* gnu/packages/ipfs.scm (gx, go-ipfs)[description]: Likewise.
* /gnu/packages/java.scm (java-commons-vfs)[synopsis]: Likewise.
* gnu/packages/linux.scm (fuseiso)[description]: Likewise.
(genext2fs)[synopsis, description]: Likewise.
* gnu/packages/package-management.scm (libostree)[description]: Likewise.
* gnu/packages/python-xyz.scm (python-requests-file)[description]:
Likewise & mark up.
* gnu/packages/rails.scm (ruby-with-advisory-lock)[description]:
Likewise.
* gnu/packages/ruby.scm (ruby-rerun)[description]: Likewise.
* guix/build/go-build-system.scm (setup-go-environment)<docstring>:
Likewise.
* guix/store/deduplication.scm (get-temp-link)<docstring>: Likewise.
 2019-04-25 04:42:16 +02:00
Tobias Geerinckx-Rice 7ecd1761a2
gnu: bubblewrap: Edit description. 
* gnu/packages/virtualization.scm (bubblewrap)[description]: Mark up & edit.
 2019-04-25 04:42:16 +02:00
Tobias Geerinckx-Rice ac32a451fa
gnu: perl-filesys-notify-simple: Edit description. 
* gnu/packages/perl.scm (perl-filesys-notify-simple)[description]: Mark up & edit.
 2019-04-25 04:42:16 +02:00
Tobias Geerinckx-Rice ddfd529cc9
gnu: libimobiledevice: Edit description. 
* gnu/packages/libusb.scm (libimobiledevice)[description]: Fix grammar & spelling.
 2019-04-25 04:42:16 +02:00
Tobias Geerinckx-Rice 2cffa2f240
gnu: libsvm: Update to 3.23. 
* gnu/packages/machine-learning.scm (libsvm): Update to 3.23.
 2019-04-25 04:42:16 +02:00
Tobias Geerinckx-Rice 5ed720976a
gnu: openfst: Update to 1.7.2. 
* gnu/packages/machine-learning.scm (openfst): Update to 1.7.2.
 2019-04-25 04:42:16 +02:00
Ricardo Wurmus 190dc09e95
gnu: r-xtable: Update to 1.8-4. 
* gnu/packages/statistics.scm (r-xtable): Update to 1.8-4.
 2019-04-24 17:04:54 +02:00
Ricardo Wurmus 3a9991e4dd
gnu: r-dbplyr: Update to 1.4.0. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.0.
 2019-04-24 17:04:54 +02:00
Ricardo Wurmus 3cc8f66e95
gnu: r-testthat: Update to 2.1.1. 
* gnu/packages/statistics.scm (r-testthat): Update to 2.1.1.
 2019-04-24 17:04:54 +02:00
Ricardo Wurmus a300ab685a
gnu: r-igraph: Update to 1.2.4.1. 
* gnu/packages/graph.scm (r-igraph): Update to 1.2.4.1.
 2019-04-24 17:04:54 +02:00
Ricardo Wurmus 8fc6188e4f
gnu: r-pamr: Update to 1.56.1. 
* gnu/packages/cran.scm (r-pamr): Update to 1.56.1.
 2019-04-24 17:04:54 +02:00
Ricardo Wurmus a059791f4e
gnu: r-ggforce: Update to 0.2.2. 
* gnu/packages/cran.scm (r-ggforce): Update to 0.2.2.
 2019-04-24 17:04:54 +02:00
Ricardo Wurmus 88a39cc6f5
gnu: r-rms: Update to 5.1-3.1. 
* gnu/packages/cran.scm (r-rms): Update to 5.1-3.1.
 2019-04-24 17:04:53 +02:00
Ricardo Wurmus f1c1bbc1a6
gnu: r-genetics: Update to 1.3.8.1.2. 
* gnu/packages/cran.scm (r-genetics): Update to 1.3.8.1.2.
 2019-04-24 17:04:53 +02:00
Ricardo Wurmus 378b5f4d1e
gnu: r-fields: Update to 9.7. 
* gnu/packages/cran.scm (r-fields): Update to 9.7.
 2019-04-24 17:04:53 +02:00
Ricardo Wurmus 90325bb182
gnu: r-splitstackshape: Update to 1.4.8. 
* gnu/packages/cran.scm (r-splitstackshape): Update to 1.4.8.
 2019-04-24 17:04:53 +02:00
Ricardo Wurmus d6fc8fe1fa
gnu: r-emmeans: Update to 1.3.4. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.4.
 2019-04-24 17:04:53 +02:00
Ricardo Wurmus 902905cc5b
gnu: r-sys: Update to 3.2. 
* gnu/packages/cran.scm (r-sys): Update to 3.2.
 2019-04-24 17:04:48 +02:00
Tobias Geerinckx-Rice 5f88d81fa4
gnu: zynaddsubfx: Update to 3.0.5. 
* gnu/packages/music.scm (zynaddsubfx): Update to 3.0.5.
 2019-04-24 15:02:05 +02:00
Tobias Geerinckx-Rice cda12aa949
gnu: padthv1: Update to 0.9.7. 
* gnu/packages/music.scm (padthv1): Update to 0.9.7.
 2019-04-24 14:56:08 +02:00
Tobias Geerinckx-Rice b19392f4f4
gnu: samplv1: Update to 0.9.7. 
* gnu/packages/music.scm (samplv1): Update to 0.9.7.
 2019-04-24 14:55:59 +02:00
Tobias Geerinckx-Rice e39c4800f0
gnu: synthv1: Update to 0.9.7. 
* gnu/packages/music.scm (synthv1): Update to 0.9.7.
 2019-04-24 14:55:53 +02:00
Tobias Geerinckx-Rice e4ea33cb2a
gnu: drumkv1: Update to 0.9.7. 
* gnu/packages/music.scm (drumkv1): Update to 0.9.7.
 2019-04-24 14:47:03 +02:00
Tobias Geerinckx-Rice 5e4ac4de79
gnu: pdfpc: Update to 4.3.2. 
* gnu/packages/pdf.scm (pdfpc): Update to 4.3.2.
 2019-04-24 14:26:02 +02:00
Tobias Geerinckx-Rice 21e67d060b
gnu: gphoto2: Update to 2.5.20. 
* gnu/packages/photo.scm (gphoto2): Update to 2.5.20.
 2019-04-24 14:09:02 +02:00
Tobias Geerinckx-Rice e48c3dd990
gnu: rawtherapee: Update to 5.6. 
* gnu/packages/photo.scm (rawtherapee): Update to 5.6.
[inputs]: Add librsvg.
 2019-04-24 13:48:02 +02:00
Tobias Geerinckx-Rice a50452508e
gnu: youtube-dl: Update to 2019.04.24. 
* gnu/packages/video.scm (youtube-dl): Update to 2019.04.24.
 2019-04-24 13:05:02 +02:00
Pierre Neidhardt 1c0dd73092
gnu: emacs-ledger-mode: Use ledger as input. 
* gnu/packages/finance.scm (emacs-ledger-mode)[inputs]: Add ledger.
[arguments]: Patch path to ledger executable.
 2019-04-24 11:12:02 +02:00
Tobias Geerinckx-Rice 28341601b3
gnu: xl2tpd: Don't use NAME in source URI. 
* gnu/packages/vpn.scm (xl2tpd)[source]: Hard-code NAME.
 2019-04-24 01:47:48 +02:00
Tobias Geerinckx-Rice 14ccd8f883
gnu: xl2tpd: Update to 1.3.14. 
* gnu/packages/vpn.scm (xl2tpd): Update to 1.3.14.
 2019-04-24 01:47:48 +02:00
Tobias Geerinckx-Rice 7067d5f654
gnu: ristretto: Don't use NAME in source URI. 
* gnu/packages/xfce.scm (ristretto)[source]: Hard-code NAME.
 2019-04-24 01:47:48 +02:00
Tobias Geerinckx-Rice 177d1af038
gnu: ristretto: Update to 0.8.4. 
* gnu/packages/xfce.scm (ristretto): Update to 0.8.4.
 2019-04-24 01:47:48 +02:00
Tobias Geerinckx-Rice b990f986f4
gnu: inxi-minimal: Update to 3.0.33-1. 
* gnu/packages/admin.scm (inxi-minimal): Update to 3.0.33-1.
 2019-04-24 01:47:48 +02:00
Nicolas Goaziou ca983a2fc1
gnu: python2-sh: Fix build. 
* gnu/packages/python-xyz.scm (python-sh): Fix build error with Python 2 due
  to failing tests.
 2019-04-24 00:47:23 +02:00
Marius Bakke 37da4fbe15
Merge branch 'master' into staging 2019-04-23 19:43:59 +02:00
Marius Bakke e01bd1a674
gnu: libseccomp: Update to 2.4.1. 
* gnu/packages/linux.scm (libseccomp): Update to 2.4.1.
 2019-04-23 19:39:03 +02:00
Marius Bakke af1d777e6c
gnu: maim: Update to 5.5.3. 
* gnu/packages/xdisorg.scm (maim): Update to 5.5.3.
 2019-04-23 19:39:03 +02:00
Marius Bakke 8949b64004
gnu: fluidsynth: Update to 2.0.5. 
* gnu/packages/audio.scm (fluidsynth): Update to 2.0.5.
 2019-04-23 19:39:03 +02:00
Marius Bakke a18581a02d
gnu: libpng: Replace with 1.6.37 [security fixes]. 
This fixes CVE-2018-14048, CVE-2018-14550, and CVE-2019-7317.

* gnu/packages/image.scm (libpng)[replacement]: New field.
(libpng-1.6.37): New public variable.
 2019-04-23 19:39:03 +02:00
Marius Bakke 30023aa670
gnu: xf86-video-intel: Update to 2.99.917-13.6afed33. 
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-13.6afed33.
 2019-04-23 19:39:02 +02:00
Arun Isaac 9694b44e3b
gnu: notmuch-addrlookup-c: Update to 9. 
* gnu/packages/mail.scm (notmuch-addrlookup-c): Update to 9.
[arguments]: Remove PREFIX from #:make-flags.
 2019-04-23 22:06:45 +05:30
Tobias Geerinckx-Rice 74ee98eed4
gnu: ocaml-ppx-hash: Fix typo in description. 
* gnu/packages/ocaml.scm (ocaml-ppx-hash)[description]:
Fix non-functional typo.
 2019-04-23 18:14:49 +02:00
Tobias Geerinckx-Rice 97f4ff6d29
gnu: libedit: Update to 20190324-3.1. 
* gnu/packages/libedit.scm (libedit): Update to 20190324-3.1.
 2019-04-23 18:13:05 +02:00
Tobias Geerinckx-Rice ef93b55e42
gnu: lynis: Update to 2.7.4. 
* gnu/packages/admin.scm (lynis): Update to 2.7.4.
 2019-04-23 18:13:05 +02:00
Tobias Geerinckx-Rice 7b7abb07c2
gnu: libmwaw: Don't use NAME in source URI. 
* gnu/packages/libreoffice.scm (libmwaw)[source]: Hard-code NAME.
 2019-04-23 18:13:05 +02:00
Tobias Geerinckx-Rice 9148ed7cd2
gnu: libodfgen: Don't use NAME in source URI. 
* gnu/packages/libreoffice.scm (libodfgen)[source]: Hard-code NAME.
 2019-04-23 18:13:05 +02:00
Tobias Geerinckx-Rice 9a4f6ceb10
gnu: libvisio: Don't use NAME in source URI. 
* gnu/packages/libreoffice.scm (libvisio)[source]: Hard-code NAME.
 2019-04-23 18:13:05 +02:00
Tobias Geerinckx-Rice cb4c99ceb9
gnu: libpagemaker: Don't use NAME in source URI. 
* gnu/packages/libreoffice.scm (libpagemaker)[source]: Hard-code NAME.
 2019-04-23 18:13:05 +02:00
Tobias Geerinckx-Rice 44aaf1e00a
gnu: libmwaw: Update to 0.3.15. 
* gnu/packages/libreoffice.scm (libmwaw): Update to 0.3.15.
 2019-04-23 18:13:05 +02:00
Tobias Geerinckx-Rice be59c48d15
gnu: perceptualdiff: Don't use unstable tarball. 
It's still broken by freeimage, unfortunately.

* gnu/packages/image.scm (perceptualdiff)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-04-23 18:13:05 +02:00
Tobias Geerinckx-Rice 645b6c7fc7
gnu: gifsicle: Use HTTPS. 
* gnu/packages/image.scm (gifsicle)[source, home-page]: Use HTTPS.
 2019-04-23 18:13:04 +02:00
Tobias Geerinckx-Rice 5c46e1dda8
gnu: gifsicle: Update to 1.92. 
* gnu/packages/image.scm (gifsicle): Update to 1.92.
 2019-04-23 18:13:04 +02:00
Ludovic Courtès 9fb1ca0808
gnu: shepherd: Update to 0.6.0. 
* gnu/packages/admin.scm (shepherd): Update to 0.6.0.  Use
"mirror://gnu" as the URL base.
[properties]: Remove.
 2019-04-23 16:38:11 +02:00
Rutger Helling 93c5c6d164
gnu: spirv-headers: Update to 1.3.7. 
* gnu/packages/vulkan.scm (spirv-headers): Update to 1.3.7.
 2019-04-23 11:03:56 +02:00
Rutger Helling b2e417f3f1
gnu: glslang: Update to 7.11.3188. 
* gnu/packages/vulkan.scm (glslang): Update to 7.11.3188.
 2019-04-23 11:03:56 +02:00
Pierre Neidhardt 83126aa8a9
gnu: emacs-disk-usage: Update to 1.3.3. 
* gnu/packages/emacs-xyz.scm (emacs-disk-usage): Update to 1.3.3.
 2019-04-23 10:43:54 +02:00
Mark H Weaver fa61900705
gnu: openssh: Update to 8.0p1. 
* gnu/packages/ssh.scm (openssh): Update to 8.0p1.
[source]: Remove patch.
* gnu/packages/patches/openssh-CVE-2018-20685.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-04-22 15:02:16 -04:00
Mark H Weaver 8c064d01a0
gnu: minetest: Simplify 'freetype' input specification. 
* gnu/packages/games.scm (minetest)[inputs]: Eliminate an unnecessary
use of Guile's '@' syntax to reference the 'freetype' package.
 2019-04-22 15:02:13 -04:00
Mark H Weaver ab0c796b67
gnu: minetest-data: Update to 5.0.1. 
* gnu/packages/games.scm (minetest-data): Update to 5.0.1.
[description]: Fix typo.
 2019-04-22 15:02:11 -04:00
Mark H Weaver df129041dd
gnu: maxima: Return #t from custom 'check' phase. 
* gnu/packages/maths.scm (maxima)[arguments]: Use invoke in the custom
check phase.
 2019-04-22 14:58:24 -04:00
Tobias Geerinckx-Rice 233eb6c8fe
gnu: ghc-haskell-lexer: Update to 1.0.2. 
* gnu/packages/haskell.scm (ghc-haskell-lexer): Update to 1.0.2.
 2019-04-22 18:08:18 +02:00
Tobias Geerinckx-Rice a263a97687
gnu: python-redis: Update to 3.2.1. 
* gnu/packages/databases.scm (python-redis): Update to 3.2.1.
 2019-04-22 15:20:34 +02:00
Tobias Geerinckx-Rice 4dfdcbf5fe
gnu: libabigail: Don't use NAME in source URI. 
* gnu/packages/elf.scm (libabigail)[source]: Hard-code NAME.
 2019-04-22 15:03:59 +02:00
Tobias Geerinckx-Rice 29cc115436
gnu: libabigail: Update to 1.6. 
* gnu/packages/elf.scm (libabigail): Update to 1.6.
 2019-04-22 15:03:52 +02:00
Tobias Geerinckx-Rice 1f2f358b69
gnu: python-sqlalchemy: Update to 1.3.3. 
* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.3.3.
 2019-04-22 14:55:58 +02:00
Tobias Geerinckx-Rice 15357dd7a9
gnu: nsd: Update to 4.1.27. 
* gnu/packages/dns.scm (nsd): Update to 4.1.27.
 2019-04-22 14:53:48 +02:00
Tobias Geerinckx-Rice ba18ea5f41
gnu: python-pyodbc: Update to 4.0.26. 
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.26.
 2019-04-22 14:25:14 +02:00
Tobias Geerinckx-Rice fe74e6ac6b
gnu: memcached: Update to 1.5.13. 
* gnu/packages/databases.scm (memcached): Update to 1.5.13.
 2019-04-22 14:17:00 +02:00
Tobias Geerinckx-Rice 7f221c0e0d
gnu: translate-shell: Update to 0.9.6.10. 
* gnu/packages/dictionaries.scm (translate-shell): Update to 0.9.6.10.
 2019-04-22 14:12:37 +02:00
Mark H Weaver 6dc4dceba5
gnu: linux-libre: Update to 5.0.9. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.9.
(%linux-libre-hash): Update hash.
 2019-04-22 07:08:08 -04:00
Mark H Weaver e81148a11d
gnu: linux-libre@4.19: Update to 4.19.36. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.36.
(%linux-libre-4.19-hash): Update hash.
 2019-04-22 07:06:57 -04:00
Mark H Weaver 689b628025
gnu: linux-libre@4.14: Update to 4.14.113. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.113.
(%linux-libre-4.14-hash): Update hash.
 2019-04-22 07:05:55 -04:00
Mark H Weaver cfb7aee078
gnu: linux-libre@4.9: Update to 4.9.170. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.170.
 2019-04-22 07:04:04 -04:00
Alex Griffin 54b41d2d71
gnu: Add pass-otp. 
* gnu/packages/password-utils.scm (pass-otp): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2019-04-22 10:28:43 +01:00
Alex Griffin 5554155649
gnu: password-store: Allow external packages to provide extensions. 
* gnu/packages/password-utils.scm (password-store): Add mechanism for
providing pass extensions in separate packages.
[arguments]: Add patch-system-extension-dir phase.
[native-search-paths]: Add PASSWORD_STORE_SYSTEM_EXTENSION_DIR.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2019-04-22 10:28:43 +01:00
Tobias Geerinckx-Rice c60b15cc62
gnu: python-dill: Update to 0.2.9. 
* gnu/packages/python-xyz.scm (python-dill): Update to 0.2.9.
 2019-04-22 02:36:21 +02:00
Tobias Geerinckx-Rice 1d3c78036f
gnu: python-serpent: Tweak description. 
* gnu/packages/python-xyz.scm (python-serpent)[description]:
Use @code{} and edit slightly.
 2019-04-22 02:36:21 +02:00
Tobias Geerinckx-Rice fa9d14ac50
gnu: python-serpent: Update to 1.28. 
* gnu/packages/python-xyz.scm (python-serpent): Update to 1.28.
[native-inputs]: Add python-attrs & python-pytz.
 2019-04-22 02:36:21 +02:00
Tobias Geerinckx-Rice 441e6d936f
gnu: python-openpyxl: Update to 2.6.2. 
* gnu/packages/python-xyz.scm (python-openpyxl): Update to 2.6.2.
 2019-04-22 02:36:20 +02:00
Tobias Geerinckx-Rice 654563ec83
gnu: perl-text-csv: Fix build. 
* gnu/packages/perl.scm (perl-text-csv)[source]: Update URL.
 2019-04-22 02:36:20 +02:00
Tobias Geerinckx-Rice 8dafe89593
gnu: parallel: Update to 20190422. 
* gnu/packages/parallel.scm (parallel): Update to 20190422.
 2019-04-22 02:36:20 +02:00
Tobias Geerinckx-Rice 5df6934cdb
gnu: eid-mw: Update to 4.4.16. 
* gnu/packages/security-token.scm (eid-mw): Update to 4.4.16.
 2019-04-22 02:32:13 +02:00
Tobias Geerinckx-Rice 50b01dcf3c
gnu: dbacl: Don't use NAME in source URI. 
* gnu/packages/textutils.scm (dbacl)[source]: Hard-code NAME.
 2019-04-22 02:32:13 +02:00
Tobias Geerinckx-Rice 3671cbe51a
gnu: youtube-dl: Update to 2019.04.17. 
* gnu/packages/video.scm (youtube-dl): Update to 2019.04.17.
 2019-04-22 02:32:12 +02:00
Tobias Geerinckx-Rice 34a169010e
gnu: dav1d: Update to 0.2.2. 
* gnu/packages/video.scm (dav1d): Update to 0.2.2.
 2019-04-22 02:32:12 +02:00
Tobias Geerinckx-Rice f465562b10
gnu: foo2zjs: Update to 20190413. 
* gnu/packages/cups.scm (foo2zjs): Update to 20190413.
 2019-04-22 02:32:12 +02:00
Pierre Langlois 56a4858210
gnu: supertuxkart: Simplify unbundling and unbundle enet. 
* gnu/packages/games.scm (supertuxkart)[source](snippet): Delete "lib/enet".
Remove "CMakeList.txt" substitution.
[arguments]<#:configure-flags>: Add "-DUSER_SYSTEM_GLEW=TRUE" and
"-DUSE_SYSTEM_ENET=TRUE".
<#:phases>: Delete.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2019-04-21 22:50:22 +01:00
Pierre Langlois 60af1822d4
gnu: supertuxkart: Update to 1.0. 
* gnu/packages/games.scm (supertuxkart): Update to 1.0.
[inputs]: Add openssl.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2019-04-21 22:50:22 +01:00
Kei Kebreau f9fee46ffb
gnu: Add alex4. 
* gnu/packages/games.scm (alex4): New variable.
 2019-04-21 10:36:19 -04:00
Kei Kebreau d61dcb1b47
gnu: Add dumb-allegro4. 
* gnu/packages/music.scm (dumb-allegro4): New variable.
 2019-04-21 10:36:19 -04:00
Kei Kebreau 72385c34ba
gnu: Add dumb. 
* gnu/packages/music.scm (dumb): New variable.
 2019-04-21 10:36:19 -04:00
Christopher Baines 9729b6ea2f
gnu: direnv: Remove go references from output. 
In the long run, it would be good to move direnv across to the
go-build-system, and update the package, but these changes do succeed in
reducing the closure size a lot.

Thanks to Tanguy Le Carrour for raising this issue on guix-devel.

* gnu/packages/shellutils.scm (direnv)[arguments]: Include the
remove-go-references phase from the go-build-system.
[inputs,native-inputs]: Move all inputs to native-inputs, as these are no
longer referenced in the output.
 2019-04-21 10:38:30 +01:00
Ricardo Wurmus 17ae31b7a8
gnu: r-hdf5r: Update to 1.2.0. 
* gnu/packages/cran.scm (r-hdf5r): Update to 1.2.0.
 2019-04-21 10:20:56 +02:00
Mathieu Othacehe dbcd503c46
gnu: guile-parted: Update to 0.0.1. 
* gnu/packages/guile-xyz.scm (guile-parted): Update to 0.0.1.
 2019-04-21 09:48:26 +02:00
Mathieu Othacehe 442a11f68f
gnu: guile-newt: Update to 0.0.1. 
* gnu/packages/guile-xyz.scm (guile-newt): Update to 0.0.1.
 2019-04-21 09:45:36 +02:00
Ludovic Courtès 1b0b1651b1
gnu: mtools: 'mformat' initializes boot sector before writing it. 
This is the last bit fixing <https://bugs.gnu.org/35283>.

Previously, 'mformat' (used by 'grub-mkrescue') would pass uninitialized
bytes to write(2), leading to non-deterministic FAT image contents.
This patch fixes that.

* gnu/packages/patches/mtools-mformat-uninitialized.patch: New file.
* gnu/packages/mtools.scm (mtools)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-04-21 00:51:19 +02:00
Ludovic Courtès 5502fbd7fd
gnu: valgrind: Add 3.15.0. 
* gnu/packages/valgrind.scm (valgrind-3.15): New variable.
 2019-04-21 00:51:19 +02:00
Ludovic Courtès 52b5fe5bcf
gnu: grub: 'grub-mkrescue' honors 'GRUB_FAT_SERIAL_NUMBER'. 
* gnu/packages/patches/grub-efi-fat-serial-number.patch: New file.
* gnu/packages/bootloaders.scm (grub)[source](patches): Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-04-21 00:51:18 +02:00
Kei Kebreau a3e6cf9876
gnu: Add git-lfs. 
* gnu/packages/version-control.scm (git-lfs): New variable.
 2019-04-20 16:40:35 -04:00
Ricardo Wurmus afabb9ecfb
gnu: ibus-libpinyin: Add missing runtime input. 
* gnu/packages/ibus.scm (ibus-libpinyin)[inputs]: Add python-pygobject.
 2019-04-20 12:33:10 +02:00
Ricardo Wurmus 446130300e
gnu: libpinyin: Update to 2.3.0. 
* gnu/packages/ibus.scm (libpinyin): Update to 2.3.0.
 2019-04-20 12:26:12 +02:00
Ricardo Wurmus 811eae11cd
gnu: ibus-libpinyin: Update to 1.11.0. 
* gnu/packages/ibus.scm (ibus-libpinyin): Update to 1.11.0.
 2019-04-20 12:26:12 +02:00
Ricardo Wurmus b2c6b467f3
gnu: ibus: Update to 1.5.20. 
* gnu/packages/ibus.scm (ibus): Update to 1.5.20.
[arguments]: Remove make-flags; remove "--disable-python2" from
configure-flags; add build phase "patch-python-target-directories".
[inputs]: Replace intltool with gnu-gettext.
 2019-04-20 12:26:08 +02:00
Maxim Cournoyer 73326e742d
gnu: Add emacs-robot-mode. 
* gnu/packages/emacs-xyz.scm (emacs-robot-mode): New variable.
 2019-04-19 20:27:27 -04:00
Maxim Cournoyer 5b84c12022
gnu: Add python-robotframework-lint. 
* gnu/packages/python-xyz.scm (python-robotframework-lint): New variable.
 2019-04-19 20:27:27 -04:00
Maxim Cournoyer c0c64f175c
gnu: Add python-robotframework-sshlibrary. 
* gnu/packages/python-xyz.scm (python-robotframework-sshlibrary): New variable.
 2019-04-19 20:27:27 -04:00
Maxim Cournoyer b979028527
gnu: Add python-robotframework. 
* gnu/packages/python-xyz.scm (python-robotframework): New variable.
* gnu/packages/patches/python-robotframework-honor-source-date-epoch.patch:
Add patch.
* gnu/local.mk (dist_patch_DATA): Register it.
 2019-04-19 20:27:27 -04:00
Maxim Cournoyer c0c0bb3823
gnu: Add python-rellu. 
* gnu/packages/python-xyz.scm (python-rellu): New variable.
 2019-04-19 20:27:27 -04:00
Maxim Cournoyer d5a998fa4c
gnu: Add python-pygithub. 
* gnu/packages/python-xyz.scm (python-pygithub): New variable.
 2019-04-19 20:27:21 -04:00
Leo Famulari 1e72a23d49
gnu: rct: Be more idiomatic. 
* gnu/packages/cpp.scm (rct): Move the call to 'git-version' into the
package definition.
[source]: Explicitly include the source URI rather than using
'home-page'.
 2019-04-19 15:14:54 -04:00
Mark H Weaver 18f8770d58
gnu: linux-libre: Update to 5.0.8. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.8.
(%linux-libre-hash): Update hash.
 2019-04-19 14:29:20 -04:00
Mark H Weaver 5547653eb8
gnu: linux-libre@4.19: Update to 4.19.35. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.35.
(%linux-libre-4.19-hash): Update hash.
 2019-04-19 14:27:42 -04:00
Mark H Weaver 3f6b7699cd
gnu: linux-libre@4.14: Update to 4.14.112. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.112.
(%linux-libre-4.14-hash): Update hash.
 2019-04-19 14:26:59 -04:00
Mark H Weaver a85190ddd0
gnu: linux-libre@4.9: Update to 4.9.169. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.169.
 2019-04-19 14:26:19 -04:00
Nicolò Balzarotti 107850b391
gnu: Add r-styler. 
* gnu/packages/cran.scm (r-styler): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-04-19 19:14:24 +02:00
Nicolas Goaziou 2613bab627
gnu: grammalecte: Update to 1.0.1. 
* gnu/packages/dictionaries.scm (grammalecte): Update to 1.0.1.
[source]: Update URL.
 2019-04-19 18:37:22 +02:00
Ludovic Courtès 60ecacdeaa
gnu: linkchecker: Shorten patch file name. 
This file name was too long for 'tar', as reported by 'guix lint'.

* gnu/packages/patches/linkchecker-mark-more-tests-that-require-the-network.patch:
Rename to...
* gnu/packages/patches/linkchecker-tests-require-network.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/web.scm (linkchecker)[source]: Likewise.
 2019-04-19 17:46:40 +02:00
Ludovic Courtès 30a6cd7cd0
gnu: ocaml-dose3: Shorten patch file name. 
This file name was too long for 'tar', as reported by 'guix lint'.

* gnu/packages/patches/ocaml-dose3-Add-unix-as-dependency-to-dose3.common-in-META.in.patch:
Rename to...
* gnu/packages/patches/ocaml-dose3-add-unix-dependency.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ocaml.scm (ocaml-dose3)[source]: Adjust accordingly.
 2019-04-19 17:46:40 +02:00
Maxim Cournoyer b24fd2c268
gnu: Add python-deprecated. 
* gnu/packages/python-xyz.scm (python-deprecated): New variable.
 2019-04-19 10:56:47 -04:00
Maxim Cournoyer 13d825fcb6
gnu: Add python-scp. 
* gnu/packages/python-xyz.scm (python-scp): New variable.
 2019-04-19 10:56:47 -04:00
Maxim Cournoyer 0f0a5ef9e8
gnu: Add python-bumpversion. 
* gnu/packages/python-xyz.scm (python-bumpversion): New variable.
 2019-04-19 10:56:46 -04:00
Ricardo Wurmus 296da6e624
gnu: r-seurat: Update to 3.0.0. 
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.0.0.
[propagated-inputs]: Remove r-dosnow, r-dplyr, r-dtw, r-foreach, r-fpc,
r-gplots, r-hdf5r, r-hmisc, r-httr, r-lars, r-mixtools, r-reshape2, and
r-tidyr; add r-future, r-future-apply, r-ggrepel, r-kernsmooth, r-rlang,
r-rsvd, r-scales, and r-sctransform.
 2019-04-19 15:38:47 +02:00
Ricardo Wurmus 9b86fea05f
gnu: Add r-sctransform. 
* gnu/packages/cran.scm (r-sctransform): New variable.
 2019-04-19 15:38:46 +02:00
Ricardo Wurmus 7015ae6881
gnu: r-urltools: Update to 1.7.3. 
* gnu/packages/cran.scm (r-urltools): Update to 1.7.3.
 2019-04-19 14:43:34 +02:00
Ricardo Wurmus f0826fec46
gnu: r-rdpack: Update to 0.11-0. 
* gnu/packages/cran.scm (r-rdpack): Update to 0.11-0.
 2019-04-19 14:43:29 +02:00
Ricardo Wurmus 5ac82ee33b
gnu: r-sdmtools: Update to 1.1-221.1. 
* gnu/packages/cran.scm (r-sdmtools): Update to 1.1-221.1.
 2019-04-19 14:43:23 +02:00
Ricardo Wurmus 3d60c80713
gnu: r-hardyweinberg: Update to 1.6.2. 
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.2.
 2019-04-19 14:43:17 +02:00
Ricardo Wurmus 8e79d820d0
gnu: r-clipr: Update to 0.6.0. 
* gnu/packages/cran.scm (r-clipr): Update to 0.6.0.
 2019-04-19 14:43:10 +02:00
Ricardo Wurmus 664a6bc1a6
gnu: r-caret: Update to 6.0-83. 
* gnu/packages/statistics.scm (r-caret): Update to 6.0-83.
 2019-04-19 14:42:51 +02:00
Ricardo Wurmus f00067dbfb
gnu: klick: Fix build with latest scons. 
* gnu/packages/music.scm (klick)[arguments]: Patch "SConstruct" file to make
it compatible with the current version of scons.
 2019-04-19 14:24:04 +02:00
Christopher Baines 35259437a7
gnu: perl-datetime-timezone: Fix missing timezone data. 
I noticed this when using Sqitch, on systems without /usr/share/zoneinfo,
actions like deploy fail.

* gnu/packages/perl.scm (perl-datetime-timezone)[arguments]: Add 'patch-tzdata
phase to replace /usr/share/zoneinfo with a reference to the tzdata package.
[inputs]: Add the tzdata package.
 2019-04-19 11:42:30 +01:00
Marius Bakke f32164abd3
gnu: python2-send2trash: Don't inherit properties from python-send2trash. 
This is a follow-up to commit 20b3fde776.
Commits and beer do not mix well.

* gnu/packages/python-xyz.scm (python2-send2trash): Inherit using STRIP-PYTHON2-VARIANT.
 2019-04-19 02:29:43 +02:00
Marius Bakke 20b3fde776
gnu: python-send2trash: Really delay Python2 variant. 
This is a follow-up to commit 4782a06f45, which
somehow solved my problem, but did so incorrectly.

* gnu/packages/python-xyz.scm (python-send2trash)[properties]: Refer to
PYTHON2-SEND2TRASH.
 2019-04-19 01:57:34 +02:00
Marius Bakke cbeb891344
gnu: gpgme: Update to 1.13.0. 
* gnu/packages/gnupg.scm (gpgme): Update to 1.13.0.
[source](patches): Remove.
 2019-04-19 01:48:07 +02:00
Marius Bakke 4782a06f45
gnu: python-send2trash: Properly delay python2 variant. 
* gnu/packages/python-xyz.scm (python2-send2trash)[properties]: Move from here ...
(python-send2trash)[properties]: ... to here.
 2019-04-19 01:48:07 +02:00
Marius Bakke c105e50903
gnu: python-service-identity: Update to 18.1.0. 
* gnu/packages/python-crypto.scm (python-service-identity): Update to 18.1.0.
 2019-04-19 01:48:07 +02:00
Marius Bakke 1adde06e4e
gnu: python-jsonschema: Update to 3.0.1. 
* gnu/packages/python-xyz.scm (python-jsonschema): Update to 3.0.1.
[arguments]: Adjust check phase for Twisted instead of nosetests.
[native-inputs]: Remove PYTHON-NOSE and PYTHON-VCVERSIONER.  Add
PYTHON-SETUPTOOLS-SCM and PYTHON-TWISTED.
[propagated-inputs]: Add PYTHON-ATTRS, PYTHON-PYRSISTENT and PYTHON-SIX.
(python2-jsonschema)[native-inputs, propagated-inputs]: Inherit.
 2019-04-19 01:48:07 +02:00
Marius Bakke ea43f0d581
gnu: Add python-pyrsistent. 
* gnu/packages/python-xyz.scm (python-pyrsistent, python2-pyrsistent): New
public variables.
 2019-04-19 01:48:07 +02:00
Marius Bakke 52ca1c4abf
gnu: python-twisted: Update to 19.2.0. 
* gnu/packages/python-xyz.scm (python-twisted): Update to 19.2.0.
[propagated-inputs]: Add PYTHON-PYHAMCREST.
 2019-04-19 01:48:06 +02:00
Marius Bakke 919d80a0e0
gnu: python-automat: Update to 0.7.0. 
* gnu/packages/python-xyz.scm (python-automat): Update to 0.7.0.
 2019-04-19 01:48:06 +02:00
Marius Bakke bcfb8fac36
gnu: python-m2r: Update to 0.2.1. 
* gnu/packages/python-xyz.scm (python-m2r): Update to 0.2.1.
 2019-04-19 01:48:06 +02:00
Marius Bakke e95c983706
gnu: python-idna: Update to 2.8. 
* gnu/packages/python-xyz.scm (python-idna): Update to 2.8.
 2019-04-19 01:48:06 +02:00
Marius Bakke 431a0d26c8
gnu: python-hyperlink: Update to 19.0.0. 
* gnu/packages/python-web.scm (python-hyperlink): Update to 19.0.0.
 2019-04-19 01:48:06 +02:00
Marius Bakke 8142eadd40
gnu: python-zope-interface: Update to 4.6.0. 
* gnu/packages/python-web.scm (python-zope-interface): Update to 4.6.0.
 2019-04-19 01:48:06 +02:00