a63117c8ae
gnu: r-dt: Update to 0.4.
...
* gnu/packages/statistics.scm (r-dt): Update to 0.4.
[propagated-inputs]: Add r-crosstalk.
2018-02-13 16:18:44 +01:00
1324f85b43
gnu: r-rprojroot: Update to 1.3-2.
...
* gnu/packages/statistics.scm (r-rprojroot): Update to 1.3-2.
2018-02-13 16:18:44 +01:00
edab1c049b
gnu: r-hms: Update to 0.4.1.
...
* gnu/packages/statistics.scm (r-hms): Update to 0.4.1.
2018-02-13 16:18:44 +01:00
80f72101b4
gnu: r-withr: Update to 2.1.1.
...
* gnu/packages/statistics.scm (r-withr): Update to 2.1.1.
[propagated-inputs]: Remove r-lattice.
2018-02-13 16:18:44 +01:00
ecba783c29
gnu: r-git2r: Update to 0.21.0.
...
* gnu/packages/statistics.scm (r-git2r): Update to 0.21.0.
2018-02-13 16:18:44 +01:00
9fb6e62ef5
gnu: r-openssl: Update to 1.0.
...
* gnu/packages/statistics.scm (r-openssl): Update to 1.0.
2018-02-13 16:18:44 +01:00
78e03a761c
gnu: r-xml2: Update to 1.2.0.
...
* gnu/packages/statistics.scm (r-xml2): Update to 1.2.0.
[native-inputs]: Add pkg-config.
[propagated-inputs]: Remove r-bh.
[inputs]: Add zlib.
2018-02-13 16:18:43 +01:00
2afbaab56c
gnu: r-chron: Update to 2.3-52.
...
* gnu/packages/statistics.scm (r-chron): Update to 2.3-52.
2018-02-13 16:18:43 +01:00
172b63e436
gnu: r-dbplyr: Update to 1.2.0.
...
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.2.0.
[propagated-inputs]: Add r-tidyselect.
2018-02-13 16:18:43 +01:00
59b62f197d
gnu: r-tibble: Update to 1.4.2.
...
* gnu/packages/statistics.scm (r-tibble): Update to 1.4.2.
[propagated-inputs]: Add r-cli, r-crayon, and r-pillar; remove r-rcpp.
2018-02-13 16:18:43 +01:00
7387d35228
gnu: r-rlang: Update to 0.1.6.
...
* gnu/packages/statistics.scm (r-rlang): Update to 0.1.6.
2018-02-13 16:18:43 +01:00
c36ac74005
gnu: r-microbenchmark: Update to 1.4-4.
...
* gnu/packages/statistics.scm (r-microbenchmark): Update to 1.4-4.
[propagated-inputs]: Remove r-ggplot2.
2018-02-13 16:18:43 +01:00
ab3330e174
gnu: r-knitr: Update to 1.19.
...
* gnu/packages/statistics.scm (r-knitr): Update to 1.19.
[propagated-inputs]: Remove r-digest.
2018-02-13 16:18:43 +01:00
d222070ad4
gnu: r-estimability: Update to 1.3.
...
* gnu/packages/statistics.scm (r-estimability): Update to 1.3.
2018-02-13 16:18:43 +01:00
71d2f03be3
gnu: r-digest: Update to 0.6.15.
...
* gnu/packages/statistics.scm (r-digest): Update to 0.6.15.
2018-02-13 16:18:43 +01:00
ff1197c86e
gnu: r-rpart: Update to 4.1-12.
...
* gnu/packages/statistics.scm (r-rpart): Update to 4.1-12.
2018-02-13 16:18:43 +01:00
6aa4be9c3c
gnu: r-mgcv: Update to 1.8-23.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-23.
2018-02-13 16:18:43 +01:00
4c9264c1b9
gnu: r-mass: Update to 7.3-48.
...
* gnu/packages/statistics.scm (r-mass): Update to 7.3-48.
2018-02-13 16:18:43 +01:00
e30b878ec8
gnu: r-hexbin: Update to 1.27.2.
...
* gnu/packages/statistics.scm (r-hexbin): Update to 1.27.2.
2018-02-13 16:18:41 +01:00
a102d359a6
Merge branch 'master' into core-updates
2018-01-23 17:01:07 -05:00
5f1bb222c9
gnu: Add r-catterplots.
...
* gnu/packages/statistics.scm (r-catterplots): New variable.
2018-01-21 14:18:09 +01:00
23de2e1d5f
Merge remote-tracking branch 'origin/master' into core-updates
2017-12-31 14:10:25 +02:00
e9960d8cba
gnu, doc: Use HTTPS for cran.r-project.org home pages.
...
* gnu/packages/bioinformatics.scm (r-sparql, r-acsnminer, r-gkmsvm)
(r-maldiquant, r-gprofiler)[home-page]: Use HTTPS.
* gnu/packages/cran.scm (r-colorspace, r-auc, r-calibrate, r-shape)
(r-compare, r-proxy, r-sp, r-rmtstat, r-lmtest, r-inline, r-bbmle)
(r-lpsolve, r-energy, r-suppdists, r-ksamples, r-cvst, r-drr, r-prodlim)
(r-ddalpha, r-rcpproll, r-ipred, r-psych, r-truncnorm, r-rsolnp, r-laeken)
(r-vcd, r-ica, r-scatterplot3d)[home-page]: Likewise.
* gnu/packages/machine-learning.scm (r-adaptivesparsity, r-kernlab)
[home-page]: Likewise.
* gnu/packages/maths.scm (r-quadprog, r-pracma)[home-page]: Likewise.
* gnu/packages/statistics.scm (r-boot, r-cluster, r-codetools, r-foreign)
(r-kernsmooth, r-nlme, r-mgcv, r-rpart, r-dichromat, r-estimability)
(r-pheatmap, r-labeling, r-magrittr, r-munsell, r-rcolorbrewer, r-sendmailr)
(r-gdtools, r-acepack, r-formula, r-locfit, r-chron, r-coda, r-backports)
(r-brew, r-commonmark, r-rstudioapi, r-plotrix, r-gridbase, r-bitops)
(r-catools, r-xnomial, r-lambda-r, r-whoreadsthis, r-futile-options)
(r-futile-logger, r-segmented, r-snow, r-iterators, r-foreach, r-doparallel)
(r-domc, r-irlba, r-registry, r-e1071, r-bigmemory-sri, r-r-methodss3)
(r-tidyselect, r-base64, r-runit, r-sfsmisc, r-gtools, r-gdata, r-gplots)
(r-ztable, r-vipor, r-sourcetools, r-statmod, r-compquadform, r-mixtools)
(r-fastica, r-diptest, r-modeltools, r-flexmix, r-deoptimr, r-pcapp)
(r-rrcov, r-fit-models, r-robust, r-trimcluster, r-fpc, r-fnn)
(r-modelmetrics, r-nloptr, r-lme4, r-tclust, r-lubridate)[home-page]:
Likewise.
* gnu/packages/web.scm (r-htmltools, r-hwriter, r-rjson, r-rook)[home-page]:
Likewise.
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Likewise.
2017-12-24 16:12:13 +01:00
f76fc96866
Merge branch 'master' into core-updates
2017-12-21 13:58:35 -05:00
aead9e1bc5
gnu: r-testthat: Update to 2.0.0.
...
* gnu/packages/statistics.scm (r-testthat): Update to 2.0.0.
[propagated-inputs]: Add r-cli, r-rlang, and r-withr.
2017-12-19 20:35:08 +01:00
f9f1291bc0
gnu: r-ade4: Update to 1.7-10.
...
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-10.
[propagated-inputs]: Add r-mass.
2017-12-19 20:35:07 +01:00
83b0e1d53f
gnu: r-registry: Update to 0.5.
...
* gnu/packages/statistics.scm (r-registry): Update to 0.5.
2017-12-19 20:35:07 +01:00
d2dc69b8be
gnu: r-iterators: Update to 1.0.9.
...
* gnu/packages/statistics.scm (r-iterators): Update to 1.0.9.
2017-12-19 20:35:07 +01:00
4a1945da16
gnu: r-segmented: Update to 0.5-3.0.
...
* gnu/packages/statistics.scm (r-segmented): Update to 0.5-3.0.
2017-12-19 20:35:06 +01:00
0a1b447e2b
gnu: r-rprojroot: Update to 1.3-1.
...
* gnu/packages/statistics.scm (r-rprojroot): Update to 1.3-1.
2017-12-19 20:35:06 +01:00
102a271870
gnu: r-rcpparmadillo: Update to 0.8.300.1.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.300.1.0.
2017-12-19 20:35:06 +01:00
0300cacae1
gnu: r-plotrix: Update to 3.7.
...
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7.
2017-12-19 20:35:06 +01:00
004e108aad
gnu: r-git2r: Update to 0.20.0.
...
* gnu/packages/statistics.scm (r-git2r): Update to 0.20.0.
2017-12-19 20:35:06 +01:00
069e3b5c09
gnu: r-backports: Update to 1.1.2.
...
* gnu/packages/statistics.scm (r-backports): Update to 1.1.2.
2017-12-19 20:35:05 +01:00
1028f9ef11
gnu: r-yaml: Update to 2.1.16.
...
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.16.
2017-12-19 20:35:05 +01:00
de3fd9253f
gnu: r-reshape2: Update to 1.4.3.
...
* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.3.
2017-12-19 20:35:05 +01:00
d0c1a402db
gnu: r-digest: Update to 0.6.13.
...
* gnu/packages/statistics.scm (r-digest): Update to 0.6.13.
2017-12-19 20:35:05 +01:00
28fc96cb1e
gnu: Update r-cowplot to 0.9.2.
...
* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.2.
2017-12-19 10:47:19 +01:00
32cd878be0
Merge branch 'master' into core-updates
2017-12-19 01:42:40 +01:00
6bc862c100
gnu: r-foreach: Update to 1.4.4.
...
* gnu/packages/statistics.scm (r-foreach): Update to 1.4.4
2017-12-15 16:44:26 +01:00
a135b3ddfe
gnu: r-caret: Update to 6.0-78.
...
* gnu/packages/statistics.scm (r-caret): Update to 6.0-78
2017-12-14 00:18:16 +01:00
5ac4bd9c0a
gnu: r-domc: Update to 1.3.5.
...
* gnu/packages/statistics.scm (r-domc): Update to 1.3.5
2017-12-14 00:18:15 +01:00
9cf5f134d5
gnu: Switch to using the version-major procedure.
...
* gnu/packages/audio.scm (ardour)[arguments]: Switch to using version-major.
(hmmer)[source]: Switch to using version-major.
(pidgin)[native-search-paths]: Switch to using version-major.
(r-minimal)[source]: Switch to using version-major.
2017-12-11 19:12:33 +00:00
77181815ae
Merge branch 'master' into core-updates
2017-12-05 23:41:30 +01:00
f1b90a2b58
gnu: r-bigmemory: Update to 4.5.31.
...
* gnu/packages/statistics.scm (r-bigmemory): Update to 4.5.31.
[propagated-inputs]: Remove r-r-utils.
2017-11-30 17:28:27 +01:00
b50a4b1391
gnu: r-cowplot: Update to 0.9.1.
...
* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.1.
[propagated-inputs]: Add r-scales.
2017-11-30 17:28:27 +01:00
a3ae2fa537
gnu: r-rcppprogress: Update to 0.4.
...
* gnu/packages/statistics.scm (r-rcppprogress): Update to 0.4.
[propagated-inputs]: Add r-devtools.
2017-11-30 17:28:26 +01:00
0382d37734
gnu: r-rmarkdown: Update to 1.8.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.8.
[propagated-inputs]: Remove r-catools; add r-mime and r-stringr.
2017-11-30 17:28:26 +01:00
e35cac9581
gnu: r-batchjobs: Update to 1.7.
...
* gnu/packages/statistics.scm (r-batchjobs): Update to 1.7.
[propagated-inputs]: Add r-backports, r-data-table, and r-stringi; remove
r-fail and r-stringr.
2017-11-30 17:28:25 +01:00
87313f64d9
gnu: r-stringi: Update to 1.1.6.
...
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.6.
2017-11-30 17:28:16 +01:00
3e11bddcc7
gnu: r-devtools: Update to 1.13.4.
...
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.4.
2017-11-30 17:28:15 +01:00
20b0f8a5ec
gnu: r-mclust: Update to 5.4.
...
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.
2017-11-30 17:28:15 +01:00
6d4aed8d98
gnu: r-rcppeigen: Update to 0.3.3.3.1.
...
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.1.
2017-11-30 17:28:14 +01:00
a0a3184925
gnu: r-car: Update to 2.1-6.
...
* gnu/packages/statistics.scm (r-car): Update to 2.1-6.
2017-11-30 17:28:14 +01:00
c8fb593502
gnu: r-sn: Update to 1.5-1.
...
* gnu/packages/statistics.scm (r-sn): Update to 1.5-1.
2017-11-30 17:28:13 +01:00
b796f9e6be
gnu: r-openssl: Update to 0.9.9.
...
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.9.
2017-11-30 17:28:13 +01:00
09c0107f75
gnu: r-hms: Update to 0.4.0.
...
* gnu/packages/statistics.scm (r-hms): Update to 0.4.0.
[propagated-inputs]: Add r-rlang and r-pkgconfig.
2017-11-30 17:28:12 +01:00
8937abefb2
gnu: Update r-matrix to 1.2-12.
...
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-12.
2017-11-30 12:52:25 +01:00
c71558ffed
gnu: Update r-cluster to 2.0.6.
...
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.6.
2017-11-30 12:51:54 +01:00
cbe1314a7e
gnu: Update r-minimal to 3.4.3.
...
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.3.
2017-11-30 12:50:23 +01:00
2dd12924cf
Merge branch 'master' into core-updates
2017-11-19 15:01:00 +01:00
33dc54b08c
gnu: Move date/time packages from python.scm to time.scm.
...
* gnu/packages/python.scm (python-pytz, python2-pytz, python-dateutil,
python2-dateutil, python-parsedatetime, python2-parsedatetime,
python-tzlocal, python-isodate, python2-isodate, python-iso8601,
python2-iso8601, python-monotonic, python2-monotonic, python-pyrfc3339,
python2-pyrfc3339, python-arrow, python2-arrow, python-aniso8601,
python2-aniso8601): Move from here...
* gnu/packages/time.scm: ...to here.
* gnu/packages/calendar.scm,
gnu/packages/check.scm,
gnu/packages/django.scm,
gnu/packages/ebook.scm,
gnu/packages/gnome.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/mail.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/rdf.scm,
gnu/packages/statistics.scm,
gnu/packages/tls.scm,
gnu/packages/tryton.scm,
gnu/packages/version-control.scm: Adjust accordingly.
2017-11-18 12:45:19 +01:00
9ef9c6489f
gnu: Remove duplicates from (gnu packages statistics).
...
* gnu/packages/statistics.scm (r-cluster, r-codetools, r-kernsmooth): Remove
duplicates.
2017-11-18 11:18:39 +01:00
ac257f127a
gnu: Move testing packages from python.scm to check.scm.
...
* gnu/packages/python.scm (python-behave-web-api, python2-behave-web-api,
python-mock, python2-mock, python-mock-2, python-nose, python2-nose,
python-nose2, python2-nose2, python-unittest2, python2-unittest2,
python-pytest, python2-pytest, python-pytest-3.0, python2-pytest-3.0,
python-pytest-cov, python2-pytest-cov, python-pytest-runner,
python2-pytest-runner, python-pytest-mock, python2-pytest-mock,
python-pytest-xdist, python2-pytest-xdist, python-scripttest,
python2-scripttest, python-testtools, python2-testtools, python-testscenarios,
python2-testscenarios, python-testresources, python2-testresources,
python-subunit, python2-subunit, python-fixtures, python2-fixtures,
python-testrepository, python2-testrepository, python-coverage,
python2-coverage, python-cov-core, python2-cov-core, python-testpath,
python2-testpath, python-testlib, python2-testlib, python-pytest-cache,
python2-pytest-cache, python-pytest-localserver, python-pytest-xprocess,
python-pytest-subtesthack, python2-pytest-subtesthack, python-hypothesis,
python2-hypothesis, python-lit, python2-lit, python-pytest-pep8,
python2-pytest-pep8, python-pytest-flakes, python2-pytest-flakes,
python2-coverage-test-runner, python-pylint, python2-pylint,
python-paramunittest, python2-python-paramunittest, python-pytest-warnings,
python2-pytest-warnings, python-pytest-capturelog, python2-pytest-capturelog,
python-pytest-catchlog, python2-pytest-catchlog, python-nosexcover,
python2-nosexcover, python-discover, python2-discover, behave, python-rednose,
python2-rednose, python-nose-randomly, python2-nose-randomly,
python-nose-timer, python2-nose-timer): Move from here...
* gnu/packages/check.scm: ...to here.
* gnu/packages/admin.scm,
gnu/packages/android.scm,
gnu/packages/backup.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/calendar.scm,
gnu/packages/dav.scm,
gnu/packages/django.scm,
gnu/packages/freedesktop.scm,
gnu/packages/haskell.scm,
gnu/packages/image.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/ldc.scm,
gnu/packages/libffi.scm,
gnu/packages/mail.scm,
gnu/packages/mpd.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/password-utils.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/rdf.scm,
gnu/packages/statistics.scm,
gnu/packages/storage.scm,
gnu/packages/time.scm,
gnu/packages/tls.scm,
gnu/packages/tor.scm,
gnu/packages/tryton.scm: Adjust accordingly.
2017-11-17 22:36:26 +01:00
e99f045cc8
gnu: Add r-directlabels.
...
* gnu/packages/statistics.scm (r-directlabels): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-09 23:54:48 +01:00
2e648d2bc4
gnu: r-prabclus: Update description.
...
* gnu/packages/statistics.scm (r-prabclus)[description]: Fix grammar errors.
2017-11-07 23:32:46 +01:00
14e5f6b20a
gnu: r-fdrtool: Update description.
...
* gnu/packages/statistics.scm (r-fdrtool)[description]: Use "@dfn" syntax.
2017-11-07 23:32:46 +01:00
60ec9da3aa
gnu: r-tidyselect: Update to 0.2.3.
...
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.3.
2017-11-07 08:15:44 +01:00
65a8cd6676
gnu: r-lubridate: Update to 1.7.1.
...
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.1.
[propagated-inputs]: Add r-rcpp.
2017-11-07 08:15:41 +01:00
689edf1153
gnu: r-preprocesscore: Update to 1.40.0.
...
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.40.0.
2017-11-07 08:15:41 +01:00
e7f680f071
gnu: r-r-utils: Update to 2.6.0.
...
* gnu/packages/statistics.scm (r-r-utils): Update to 2.6.0.
2017-11-07 08:15:41 +01:00
ecfe98a17a
gnu: r-openssl: Update to 0.9.8.
...
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.8.
2017-11-07 08:15:40 +01:00
aced057fbc
gnu: r-rlang: Update to 0.1.4.
...
* gnu/packages/statistics.scm (r-rlang): Update to 0.1.4.
2017-11-07 08:15:40 +01:00
f9c3bd2e01
gnu: Generalize the variable name of the test-only tzdata package.
...
* gnu/packages/base.scm (tzdata-2017a): Rename variable to tzdata-for-tests.
* gnu/packages/calcurse.scm (calcurse)[native-inputs, arguments]: Adjust
accordingly.
gnu/packages/glib.scm (glib): Likewise.
* gnu/packages/perl.scm (perl-libtime-parsedate): Adjust accordingly and
add tzdata-for-tests #:disallowed-references.
* gnu/packages/statistics.scm (r-minimal): Adjust accordingly.
2017-11-04 10:32:30 -04:00
a6ec5b7043
gnu: r-withr: Update to 2.1.0.
...
* gnu/packages/statistics.scm (r-withr): Update to 2.1.0.
[propagated-inputs]: Add r-lattice.
2017-11-03 14:14:37 +01:00
fd9afcf4ea
gnu: r-quantreg: Update to 5.34.
...
* gnu/packages/statistics.scm (r-quantreg): Update to 5.34.
2017-11-03 14:14:37 +01:00
1fe75660c0
gnu: r-robustbase: Update to 0.92-8.
...
* gnu/packages/statistics.scm (r-robustbase): Update to 0.92-8.
2017-11-03 14:14:37 +01:00
1fb415cb50
gnu: r-purrr: Update to 0.2.4.
...
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.4.
2017-11-03 14:14:37 +01:00
c8818f5577
gnu: r-irlba: Update to 2.3.1.
...
* gnu/packages/statistics.scm (r-irlba): Update to 2.3.1.
2017-11-03 14:14:37 +01:00
116e9837b5
gnu: r-checkmate: Update to 1.8.5.
...
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.5.
2017-11-03 14:14:36 +01:00
fde66e3018
gnu: r-multitaper: Update to 1.0-14.
...
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-14.
2017-11-03 14:14:36 +01:00
0a123e0609
gnu: r-data-table: Update to 1.10.4-3.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4-3.
2017-11-03 14:14:36 +01:00
b5a2f37157
gnu: r-pryr: Update to 0.1.3
...
* gnu/packages/statistics.scm (r-pryr): Update to 0.1.3.
2017-11-03 14:14:36 +01:00
bc409c8d3b
gnu: r-lazyeval: Update to 0.2.1.
...
* gnu/packages/statistics.scm (r-lazyeval): Update to 0.2.1.
2017-11-03 14:14:36 +01:00
1f6f4c40c1
gnu: Add r-tgconfig.
...
* gnu/packages/statistics.scm (r-tgconfig): New variable.
2017-10-30 12:07:53 +01:00
7941d1ed5d
gnu: Add r-tgstat.
...
* gnu/packages/statistics.scm (r-tgstat): New variable.
2017-10-30 12:07:51 +01:00
8ba3f751b6
gnu: r-nloptr: Update package hash.
...
The source was repacked and reuploaded without incrementing the version
number. The difference was windows line endings on the windows files.
* gnu/packages/statistics.scm (r-nloptr)[source]: Update package hash.
2017-10-26 10:46:02 +03:00
4c77abc4da
gnu: Add r-forcats.
...
* gnu/packages/statistics.scm (r-forcats): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-25 16:24:03 +02:00
5713bbf157
Use HTTPS for bioconductor.org.
...
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for
bioconductor.org URLs.
* gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter)
(r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category)
(r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews)
(r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata)
(r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi)
(r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray)
(r-summarizedexperiment, r-genomicalignments, r-rtracklayer)
(r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern)
(r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport)
(r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid)
(r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)
(r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db)
(r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db)
(r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9)
(r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene)
(r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10)
(r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]:
Likewise.
* gnu/packages/statistics.scm (r-rcurl)[source]: Likewise.
* guix/build-system/r.scm (bioconductor-uri): Likewise.
* guix/import/cran.scm (%cran-url, bioconductor-package?)
(bioconductor-data-package?, bioconductor-experiment-package?): Likewise.
2017-10-21 17:43:40 +02:00
e059bdc9a7
gnu: r-tidyr: Update to 0.7.2.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.2.
2017-10-17 20:58:24 +02:00
d8455fe146
gnu: r-tidyselect: Update to 0.2.2.
...
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.2.
2017-10-17 20:58:24 +02:00
c43db8da3a
gnu: r-rcpparmadillo: Update to 0.8.100.1.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.100.1.0.
[native-inputs]: Add r-knitr.
2017-10-17 20:58:24 +02:00
711e6cc5f4
gnu: r-data-table: Update to 1.10.4-2.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4-2.
2017-10-17 20:58:23 +02:00
767ad2f7ad
gnu: r-chron: Update to 2.3-51.
...
* gnu/packages/statistics.scm (r-chron): Update to 2.3-51.
2017-10-17 20:58:23 +02:00
dc6cb56dec
gnu: r-dplyr: Update to 0.7.4.
...
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.4.
2017-10-17 20:58:23 +02:00
6de897ac5a
gnu: Add r-ggdendro.
...
* gnu/packages/statistics.scm (r-ggdendro): New variable.
2017-10-11 10:02:08 +02:00
6048986c89
gnu: r-lme4: Update to 1.1-14.
...
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-14.
2017-09-28 22:00:44 +02:00
26cd4194ef
gnu: r-doparallel: Update to 1.0.11.
...
* gnu/packages/statistics.scm (r-doparallel): Update to 1.0.11.
2017-09-28 22:00:44 +02:00
7147d8f7ad
gnu: r-checkmate: Update to 1.8.4.
...
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.4.
2017-09-28 22:00:44 +02:00
2c49184e2c
gnu: r-backports: Update to 1.1.1.
...
* gnu/packages/statistics.scm (r-backports): Update to 1.1.1.
2017-09-28 22:00:43 +02:00
1344deb937
gnu: r-minimal: Update to 3.4.2.
...
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.2.
2017-09-28 20:21:18 +02:00
91316f31d4
gnu: r-glmnet: Update to 2.0-13.
...
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-13.
2017-09-24 11:36:17 +02:00
d9400ee46a
gnu: r-segmented: Update to 0.5-2.2.
...
* gnu/packages/statistics.scm (r-segmented): Update to 0.5-2.2.
2017-09-24 11:36:17 +02:00
29457c43bf
gnu: r-mgcv: Update to 1.8-22.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-22.
2017-09-24 11:36:17 +02:00
2c67f96b1b
gnu: r-glmnet: Update to 2.0-12.
...
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-12.
2017-09-18 14:23:03 +02:00
0b2fc9836b
gnu: r-lambda-r: Update to 1.2.
...
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.
2017-09-18 14:23:03 +02:00
9f14fffea6
gnu: r-gridextra: Update to 2.3.
...
* gnu/packages/statistics.scm (r-gridextra): Update to 2.3.
2017-09-18 14:23:02 +02:00
37c6a738f3
gnu: r-dplyr: Update to 0.7.3.
...
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.3.
2017-09-18 14:23:02 +02:00
b0c8cba485
gnu: r-crayon: Update to 1.3.4.
...
* gnu/packages/statistics.scm (r-crayon): Update to 1.3.4.
2017-09-18 14:23:02 +02:00
ea008095c3
gnu: r-svglite: Update to 1.2.1.
...
* gnu/packages/statistics.scm (r-svglite): Update to 1.2.1.
2017-09-18 14:23:02 +02:00
7904531e5b
gnu: r-mgcv: Update to 1.8-21.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-21.
2017-09-18 14:23:02 +02:00
d9c65e5a9c
gnu: r-caret: Update to 6.0-77.
...
* gnu/packages/statistics.scm (r-caret): Update to 6.0-77.
[propagated-inputs]: Remove r-car; add r-recipes and r-withr.
2017-09-18 11:33:26 +02:00
9272144a88
gnu: r-rstudioapi: Update to 0.7.
...
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.7.
2017-09-18 11:33:26 +02:00
0dc3b4d41e
gnu: r-openssl: Update to 0.9.7.
...
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.7.
[inputs]: Replace openssl with libressl.
2017-09-18 11:33:25 +02:00
8036caa75a
gnu: r-tidyr: Update to 0.7.1.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.1.
2017-09-05 16:59:46 +02:00
31b7f0c0fc
gnu: r-gdtools: Update to 0.1.6.
...
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.6.
2017-09-05 16:59:45 +02:00
ebbb6301a3
gnu: r-minimal: Update to 3.4.1.
...
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.1.
2017-09-01 22:05:39 +02:00
89b620e7ee
gnu: r-tidyr: Update to 0.7.0.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.0.
[propagated-inputs]: Remove r-lazyeval; add r-glue, r-purrr, r-rlang, and
r-tidyselect.
2017-09-01 15:11:58 +02:00
c4a4ef39ed
gnu: Add r-tidyselect.
...
* gnu/packages/statistics.scm (r-tidyselect): New variable.
2017-09-01 15:11:58 +02:00
9077f6d9aa
gnu: r-tclust: Update to 1.3-1.
...
* gnu/packages/statistics.scm (r-tclust): Update to 1.3-1.
2017-09-01 15:11:53 +02:00
347cab66b6
gnu: r-fastcluster: Update to 1.1.24.
...
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.24.
2017-09-01 15:11:52 +02:00
d574d6bcc2
gnu: r-rcpparmadillo: Update to 0.7.960.1.2.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.960.1.2.
2017-09-01 15:11:52 +02:00
2dda8fca6f
gnu: r-plotrix: Update to 3.6-6.
...
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-6.
2017-09-01 15:11:51 +02:00
7d60652ebe
gnu: r-httr: Update to 1.3.1.
...
* gnu/packages/statistics.scm (r-httr): Update to 1.3.1.
[propagated-inputs]: Remove r-digest and r-stringr.
2017-09-01 15:11:51 +02:00
e3323e0707
gnu: r-commonmark: Update to 1.4.
...
* gnu/packages/statistics.scm (r-commonmark): Update to 1.4.
2017-09-01 15:11:51 +02:00
5d84369bda
gnu: r-ade4: Update to 1.7-8.
...
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-8.
2017-09-01 15:11:50 +02:00
fb10c923b3
gnu: r-tibble: Update to 1.3.4.
...
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.4.
2017-09-01 15:11:50 +02:00
edd5fd7208
gnu: r-rlang: Update to 0.1.2.
...
* gnu/packages/statistics.scm (r-rlang): Update to 0.1.2.
2017-09-01 15:11:49 +02:00
5a00ef0950
gnu: r-knitr: Update to 1.17.
...
* gnu/packages/statistics.scm (r-knitr): Update to 1.17.
2017-09-01 15:11:49 +02:00
3949aef601
gnu: r-bh: Update to 1.65.0-1.
...
* gnu/packages/statistics.scm (r-bh): Update to 1.65.0-1.
2017-09-01 15:11:49 +02:00
b93881b9c5
gnu: r-scales: Update to 0.5.0.
...
* gnu/packages/statistics.scm (r-scales): Update to 0.5.0.
[propagated-inputs]: Add r-r6 and r-viridislite.
2017-09-01 15:11:48 +02:00
2d99a31607
gnu: r-mgcv: Update to 1.8-19.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-19.
2017-09-01 15:11:48 +02:00
fefe9f4753
gnu: r-matrix: Update to 1.2-11.
...
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-11.
2017-09-01 15:11:48 +02:00
caa4e796e4
gnu: Add r-dbplyr.
...
* gnu/packages/statistics.scm (r-dbplyr): New variable.
2017-08-31 18:24:51 +02:00
174fbd5f3b
gnu: r-minimal: Remove timestamp from man page.
...
* gnu/packages/statistics.scm (r-minimal)[arguments]: Adjust
"build-reproducibly" phase to prevent the bundled help2man script from
printing the current month and year.
2017-08-28 15:51:05 +02:00
af9bb4cab8
gnu: pspp: Update to 1.0.1.
...
* gnu/packages/statistics.scm (pspp): Update to 1.0.1.
2017-08-28 14:44:41 +03:00
bd3a184613
gnu: r-minimal: Do not compress serialized files.
...
* gnu/packages/statistics.scm (r-minimal)[arguments]: Replace build phase
"patch-which" with "do-not-compress-serialized-files".
[propagated-inputs]: Move "which" from here...
[inputs]: ...to here.
Fixes <https://bugs.gnu.org/28157 >.
2017-08-22 16:24:24 +02:00
6be54a8751
gnu: Add rmath-standalone.
...
* gnu/packages/statistics.scm (rmath-standalone): New variable.
2017-08-22 16:24:24 +02:00
bda6c35093
gnu: pspp: Update to 1.0.0.
...
* gnu/packages/statistics.scm (pspp): Update to 1.0.0.
2017-08-20 21:44:47 +03:00
a8cd352304
gnu: r-minimal: Work around failure to embed reference to "which".
...
* gnu/packages/statistics.scm (r-minimal)[arguments]: Add phase "patch-which".
[native-inputs]: Move "which" from here...
[propagated-inputs]: ...to here.
2017-08-20 14:00:04 +02:00
97cb349dc1
gnu: r-trimcluster: Update license.
...
* gnu/packages/statistics.scm (r-trimcluster)[license]: Also specify GPLv3+.
2017-08-17 17:26:11 +02:00
adcb30642c
gnu: pspp: Update to 0.11.0.
...
This fixes CVE-2017-10791, CVE-2017-10792.
* gnu/packages/statistics.scm (pspp): Update to 0.11.0.
2017-08-16 17:57:40 +03:00
2d430f2923
Revert "gnu: pspp: Update to 0.11.0."
...
This FTBFS on x86_64 and i686.
This reverts commit f4c808df5b
2017-08-15 10:03:40 +03:00
f4c808df5b
gnu: pspp: Update to 0.11.0.
...
This fixes CVE-2017-10791, CVE-2017-10792.
* gnu/packages/statistics.scm (pspp): Update to 0.11.0.
2017-08-13 10:16:17 +03:00
c5f744a68d
gnu: Add r-robust.
...
* gnu/packages/statistics.scm (r-robust): New variable.
2017-08-09 20:08:13 +02:00
5d0afe8849
gnu: Add r-fit-models.
...
* gnu/packages/statistics.scm (r-fit-models): New variable.
2017-08-09 20:08:13 +02:00
0bae5fd6a7
gnu: Add r-rrcov.
...
* gnu/packages/statistics.scm (r-rrcov): New variable.
2017-08-09 20:08:13 +02:00
23841b2573
gnu: Add r-pcapp.
...
* gnu/packages/statistics.scm (r-pcapp): New variable.
2017-08-09 20:08:13 +02:00
0ecd065839
gnu: r-gdtools: Update to 0.1.5.
...
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.5.
2017-08-09 20:08:12 +02:00
c3317cd9fb
gnu: r-ggbeeswarm: Update to 0.6.0.
...
* gnu/packages/statistics.scm (r-ggbeeswarm): Update to 0.6.0.
2017-08-09 20:08:12 +02:00
Ricardo Wurmus