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32696 Commits

Author SHA1 Message Date
Ricardo Wurmus bcc2e0ed2e
gnu: r-rcas: Update to 1.6.0. 
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.6.0.
[source]: Fetch from bioconductor.
[native-inputs]: Remove r-knitr.
[propagated-inputs]: Add r-biocgenerics, r-biostrings, r-cowplot, r-dbi,
r-ggseqlogo, r-knitr, r-pheatmap, r-proxy, r-rsqlite, and r-s4vectors.
 2018-06-07 22:51:00 +02:00
Ricardo Wurmus e67acae706
gnu: Add r-ggseqlogo. 
* gnu/packages/cran.scm (r-ggseqlogo): New variable.
 2018-06-07 22:51:00 +02:00
Rutger Helling 8ec919404f
gnu: Add deprecated-package vulkan-icd-loader. 
* gnu/packages/vulkan.scm (vulkan-icd-loader): New variable.
 2018-06-07 13:34:13 +02:00
Efraim Flashner bb63502f0b
gnu: ovmf: Simplify build. 
* gnu/packages/firmware.scm (ovmf)[arguments]: Change custom 'build-ia32
phase to replace 'build. Remove unneeded substitutions in 'configure,
'build and 'build-x64. Shorten 'build and 'build-x64 phases.
 2018-06-07 12:20:47 +03:00
Ricardo Wurmus 6d095c4cab
gnu: star: Update to 2.6.0c. 
* gnu/packages/bioinformatics.scm (star): Update to 2.6.0c.
[source]: Fetch from git.
 2018-06-07 11:09:54 +02:00
Ricardo Wurmus 54179e2463
gnu: libreoffice: Update to 6.0.5.1. 
* gnu/packages/patches/libreoffice-icu.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libreoffice.scm (libreoffice): Update to 6.0.5.1.
[source]: Add patch.
[inputs]: Add libepubgen and libqxp.
[arguments]: Adjust "prepare-src" phase.
 2018-06-07 11:09:54 +02:00
Ricardo Wurmus e47e1f3311
gnu: orcus: Update to 0.13.4. 
* gnu/packages/libreoffice.scm (orcus): Update to 0.13.4.
 2018-06-07 11:09:54 +02:00
Ricardo Wurmus a3f2425e5d
gnu: ixion: Update to 0.13.0. 
* gnu/packages/libreoffice.scm (ixion): Update to 0.13.0.
 2018-06-07 11:09:54 +02:00
Ricardo Wurmus 4e4dcd476e
gnu: Add libqxp. 
* gnu/packages/libreoffice.scm (libqxp): New variable.
 2018-06-07 11:09:54 +02:00
Ricardo Wurmus 38be0f4245
gnu: Add libepubgen. 
* gnu/packages/libreoffice.scm (libepubgen): New variable.
 2018-06-07 11:09:54 +02:00
Adam Zimmerman d6dd64af37
gnu: opensmtpd: Fix crash on table authentication. 
* gnu/packages/patches/opensmtpd-fix-crash.patch: New patch.
* gnu/packages/mail.scm (opensmtpd)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2018-06-07 03:57:42 +02:00
Tobias Geerinckx-Rice 6acc671bef
gnu: jbig2dec: Update source and home page URIs. 
The old downloads.ghostscript.com returns a bogus 200 response, while
the new home page lists a different source.

Reported by Gábor Boskovits <boskovits@gmail.com>.

* gnu/packages/image.scm (jbig2dec)[source, home-page]: Update URIs.
 2018-06-07 03:57:41 +02:00
Nicolas Goaziou 4a007e2db9
gnu: scribus: Fix build. 
* gnu/packages/scribus.scm (scribus)[arguments]: Re-introduce fix for
  "ImportError: No module named _sysconfigdata_nd".
 2018-06-07 00:30:13 +02:00
Ricardo Wurmus 116ca65b58
Merge branch 'master' into core-updates 2018-06-06 22:43:37 +02:00
Nicolas Goaziou 25133ca172
gnu: colobot: Update to 0.1.11.1-alpha. 
* gnu/packages/games.scm (colobot): Update to 0.1.11.1-alpha.
[native-inputs]: Update "colobot-data" and "colobot-music" to 0.1.11.1-alpha.
 2018-06-06 19:16:21 +02:00
Nicolas Goaziou 89a651964a
gnu: scribus: Add "libzmf" dependency 
* gnu/packages/scribus.scm (scribus)[inputs]: Add "libzmf".
 2018-06-06 18:34:45 +02:00
Nicolas Goaziou fec8d80cd1
gnu: scribus: Update to 1.5.4. 
* gnu/packages/scribus.scm (scribus): Update to 1.5.4.
[source]: Remove patches.
[arguments]: Remove `patch-source' phase.
 2018-06-06 18:33:38 +02:00
Rutger Helling e6fcf903ec
gnu: vulkan-loader: Update URL and change name. 
* gnu/packages/emulators.scm: Change references from 'vulkan-icd-loader' to
'vulkan-loader'.
* gnu/packages/games.scm: Change references from 'vulkan-icd-loader' to
'vulkan-loader'.
* gnu/packages/video.scm: Change references from 'vulkan-icd-loader' to
'vulkan-loader'.
* gnu/packages/vulkan.scm (vulkan-loader): Rename from 'vulkan-icd-loader' to
'vulkan-loader'. Update URL and hash.
* gnu/packages/wine.scm: Change references from 'vulkan-icd-loader' to
'vulkan-loader'.
 2018-06-06 16:48:47 +02:00
Rutger Helling 7ea56cdec0
gnu: you-get: Update to 0.4.1077. 
* gnu/packages/video.scm (you-get): Update to 0.4.1077.
 2018-06-06 14:39:24 +02:00
Rutger Helling c7a2f7b999
gnu: diffoscope: Update to 95. 
* gnu/packages/package-management.scm (diffoscope): Update to 95.
 2018-06-06 14:39:24 +02:00
Rutger Helling 89fc8aef8c
gnu: epiphany: Update to 3.28.2.1. 
* gnu/packages/gnome.scm (epiphany): Update to 3.28.2.1.
 2018-06-06 14:39:24 +02:00
Rutger Helling f9036105e6
gnu: gnome-disk-utility: Update to 3.28.3. 
* gnu/packages/gnome.scm (gnome-disk-utility): Update to 3.28.3.
 2018-06-06 14:39:23 +02:00
Rutger Helling 9cf329aecc
gnu: gnome-terminal: Update to 3.28.2. 
* gnu/packages/gnome.scm (gnome-terminal): Update to 3.28.2.
 2018-06-06 14:39:23 +02:00
Rutger Helling 6a29c8d344
gnu: gedit: Update to 3.28.1. 
* gnu/packages/gnome.scm (gedit): Update to 3.28.1.
 2018-06-06 14:39:23 +02:00
Ludovic Courtès 477ee222aa
tests: Adjust 'guix package' test to "python2" name. 
This is a followup to a7714d42de, which
renamed Python 2.x to "python2".

* tests/guix-package.sh: Use g-wrap and guile@2.0 when testing
collisions.
 2018-06-06 14:37:35 +02:00
Ludovic Courtès a99b0ad785
tests: Adjust graph test. 
This is a followup to 301a424906, which
added a dependency to sed.

* tests/graph.scm ("node-edges"): Use 'hello', not 'sed', as the example
of a package without any dependency.
 2018-06-06 14:37:35 +02:00
Ricardo Wurmus e32db0fa0f
gnu: vigra: Disable broken test. 
* gnu/packages/image.scm (vigra)[arguments]: Add phase "disable-broken-test";
enable parallel build.
 2018-06-06 13:15:21 +02:00
Rutger Helling c648781cec
gnu: lynx: Update to 2.8.9dev.19. 
* gnu/packages/web-browsers.scm (lynx): Update to 2.8.9dev.19.
 2018-06-06 12:46:40 +02:00
Efraim Flashner 73c0e477e5
gnu: esmtp: Replace 'bootstrap phase. 
* gnu/packages/mail.scm (esmtp)[arguments]: Use custom 'autoconf phase
to replace default 'bootstrap phase.
 2018-06-06 13:11:50 +03:00
Efraim Flashner a34dfa249c
gnu: can-utils: Remove 'bootstrap phase. 
* gnu/packages/networking.scm (can-utils)[arguments]: Remove unnecessary
'bootstrap phase.
 2018-06-06 13:11:47 +03:00
Tobias Geerinckx-Rice 37b561e4ed
gnu: gerbv: Update to 2.6.2. 
* gnu/packages/engineering.scm (gerbv): Update to 2.6.2.
[arguments]: Remove ‘autoconf’ phase...
[native-inputs]: ...and remove its dependencies.
 2018-06-06 06:12:23 +02:00
Tobias Geerinckx-Rice d193903e0c
gnu: linsmith: Update to 0.99.31. 
* gnu/packages/engineering.scm (linsmith): Update to 0.99.31.
 2018-06-06 06:12:22 +02:00
Tobias Geerinckx-Rice 6e3d48c207
gnu: linsmith: Use HTTPS home page. 
* gnu/packages/engineering.scm (linsmith)[home-page]: Use HTTPS.
 2018-06-06 06:12:22 +02:00
Tobias Geerinckx-Rice 3b295d3f4b
gnu: python-lmdb: Update to 0.94. 
* gnu/packages/databases.scm (python-lmdb): Update to 0.94.
 2018-06-06 06:12:22 +02:00
Tobias Geerinckx-Rice fcf29a7fbb
gnu: debootstrap: Update to 1.0.101. 
* gnu/packages/debian.scm (debootstrap): Update to 1.0.101.
 2018-06-06 06:12:22 +02:00
Tobias Geerinckx-Rice 1a16b925f2
gnu: tomb: Update to 2.5. 
* gnu/packages/crypto.scm (tomb): Update to 2.5.
[inputs, arguments]: Add util-linux for ‘findmnt’.
 2018-06-06 06:12:21 +02:00
Tobias Geerinckx-Rice 115af78e32
gnu: cfitsio: Update to 3.450. 
* gnu/packages/astronomy.scm (cfitsio): Update to 3.450.
 2018-06-06 06:12:21 +02:00
Tobias Geerinckx-Rice 9566bb82e5
gnu: gnuastro: Update to 0.6. 
* gnu/packages/astronomy.scm (gnuastro): Update to 0.6.
 2018-06-06 06:12:21 +02:00
Tobias Geerinckx-Rice 60b0c25222
gnu: wcslib: Fix build. 
* gnu/packages/astronomy.scm (wcslib)[arguments]: Skip the default
‘install-license-files’ phase.  Don't build or test in parallel.
 2018-06-06 06:12:21 +02:00
Tobias Geerinckx-Rice 4f12e5cc7c
gnu: inxi: Update to 3.0.11-1. 
* gnu/packages/admin.scm (inxi): Update to 3.0.11-1.
 2018-06-06 06:12:21 +02:00
Tobias Geerinckx-Rice b740a30527
gnu: inxi: Use GIT-FETCH. 
* gnu/packages/admin.scm (inxi)[source]: Use GIT-FETCH.
[native-inputs]: Remove tar.
[arguments]: Adjust accordingly.
 2018-06-06 06:12:20 +02:00
Tobias Geerinckx-Rice 55f5556e24
gnu: inxi: Fix man page location. 
* gnu/packages/admin.scm (inxi)[arguments]: Install man page to
/share/man instead of /share/doc/man.
 2018-06-06 06:12:20 +02:00
Tobias Geerinckx-Rice bba082a1f8
gnu: ruby-asciidoctor: Use HTTPS home page. 
* gnu/packages/ruby.scm (ruby-asciidoctor)[home-page]: Use HTTPS.
 2018-06-06 06:12:20 +02:00
Tobias Geerinckx-Rice 9933a8e739
gnu: ruby-asciidoctor: Update to 1.5.7.1. 
* gnu/packages/ruby.scm (ruby-asciidoctor): Update to 1.5.7.1.
 2018-06-06 06:12:20 +02:00
Tobias Geerinckx-Rice 24a2622712
gnu: ruby-eventmachine: Use working home page. 
* gnu/packages/ruby.scm (ruby-eventmachine)[home-page]: Update URI.
 2018-06-06 06:12:19 +02:00
Tobias Geerinckx-Rice c207fa5e6c
gnu: ruby-eventmachine: Update to 1.2.7. 
* gnu/packages/ruby.scm (ruby-eventmachine): Update to 1.2.7.
 2018-06-06 06:12:19 +02:00
Tobias Geerinckx-Rice 58021db4d2
gnu: ruby-connection-pool: Update to 2.2.2. 
* gnu/packages/ruby.scm (ruby-connection-pool): Update to 2.2.2.
 2018-06-06 06:12:19 +02:00
Tobias Geerinckx-Rice 15dd85f0c3
gnu: linkchecker: Update to 9.4.0. 
* gnu/packages/web.scm (linkchecker): Update to 9.4.0.
[source]: Use GIT-FETCH.
[inputs]: Add python2-dnspython and python2-pyxdg.
[arguments]: Remove ‘remove-python-requests-version’ phase.
[license]: Remove licences of unbundled inputs.
 2018-06-06 06:12:19 +02:00
Tobias Geerinckx-Rice fe04975281
gnu: xf86-input-wacom: Update to 0.36.1. 
* gnu/packages/xdisorg.scm (xf86-input-wacom): Update to 0.36.1.
[source]: Update URI.
 2018-06-06 06:12:18 +02:00
Tobias Geerinckx-Rice 0ac68e7268
gnu: libwacom: Update to 0.30. 
* gnu/packages/xdisorg.scm (libwacom): Update to 0.30.
[source]: Update URI.
 2018-06-06 06:12:18 +02:00