8dec2229a2
gnu: blast+: Update to 2.4.0.
...
* gnu/packages/bioinformatics.scm (blast+): Update to 2.4.0.
2016-06-29 22:42:47 +10:00
bc3a2e3503
gnu: ceres-solver: Depend on glog.
...
* gnu/packages/maths.scm (ceres)[arguments]: Remove -DMINIGLOG=ON.
[inputs]: Add GLOG.
2016-06-29 12:01:05 +02:00
53d159f843
gnu: Add glog.
...
* gnu/packages/logging.scm (glog): New variable.
2016-06-29 11:13:03 +02:00
2de091f0c8
gnu: node: Make sure 'npm' remains a symlink after 'patch-shebangs'.
...
Fixes <http://bugs.gnu.org/23744 >.
Reported by Jovany Leandro G.C <bit4bit@riseup.net>
and Jelle Licht <jlicht@fsfe.org>.
* gnu/packages/node.scm (node)[arguments]: Replace 'patch-shebangs'
phase.
2016-06-29 10:06:18 +02:00
c2c36f5fab
gnu: openexr: Install 'ImfStdIO.h'.
...
* gnu/packages/graphics.scm (openexr)[source](snippet): Modify
IlmImf/Makefile.in so that it installs 'ImfStdIO.h'.
2016-06-29 10:06:18 +02:00
b0069a6777
gnu: avrdude: Use libusb-compat.
...
* gnu/packages/patches/avrdude-fix-libusb.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/flashing-tools.scm (avrdude)[source]: Remove patch.
[inputs]: Replace "libusb" with "libusb-compat".
2016-06-29 07:15:33 +02:00
3bce0f14b2
gnu: star: Update to 2.5.2a.
...
* gnu/packages/bioinformatics.scm (star): Update to 2.5.2a.
2016-06-29 10:14:22 +10:00
6c737963f6
gnu: htslib: Update to 1.3.1.
...
* gnu/packages/bioinformatics.scm (htslib): Update to 1.3.1.
2016-06-29 10:14:22 +10:00
ec9466388e
gnu: Add SEEK.
...
* gnu/packages/bioinformatics.scm (seek): New variable.
2016-06-28 22:49:05 +02:00
d6e374a0d9
gnu: mafft: Update to 7.299.
...
* gnu/packages/bioinformatics.scm (mafft): Update to 7.299.
2016-06-28 21:42:15 +10:00
48d4ce6ea3
Revert "gnu: qtbase: Don't propagate mesa."
...
This reverts commit 763a8e6e23
2016-06-28 14:33:37 +03:00
45469ebe52
gnu: metabat: Update to 0.26.3.
...
* gnu/packages/bioinformatics.scm (metabat): Update to 0.26.3.
[arguments]: Update include and linking paths accordingly.
2016-06-28 21:28:06 +10:00
af45244e36
gnu: diamond: Update to 0.8.9.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.9.
2016-06-28 19:31:25 +10:00
05e9f30f1e
gnu: r: Add pango to inputs.
...
* gnu/packages/statistics.scm (r)[inputs]: Remove cairo, add pango.
2016-06-28 09:36:00 +02:00
d2fa61bc35
tests: Add Avahi and NSS-mDNS test.
...
* gnu/tests/base.scm (%avahi-os): New variable.
(run-nss-mdns-test): New procedure.
(%test-nss-mdns): New variable.
2016-06-27 21:41:38 +02:00
c8695f325d
services: avahi: Add #:debug? parameter.
...
* gnu/services/avahi.scm (<avahi-configuration>)[debug?]: New field.
(avahi-shepherd-service): Honor it.
(avahi-service): Add #:debug? and honor it.
* doc/guix.texi (Networking Services): Adjust accordingly.
2016-06-27 21:41:38 +02:00
194ccecf77
services: avahi: Pass --daemonize and check for the PID file.
...
This makes sure the service's 'start' finishes when avahi-daemon is
ready to process requests.
* gnu/services/avahi.scm (avahi-shepherd-service): Use --daemonize
instead of --syslog and add #:pid-file.
2016-06-27 21:41:38 +02:00
037f9e07cd
tests: 'marionette-service-type' nows takes a <marionette-configuration>.
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* gnu/tests.scm (<marionette-configuration>): New record type.
(marionette-shepherd-service): Argument now is a <marionette-configuration>.
(marionette-operating-system): Adjust accordingly. Add #:requirements
parameter and honor it.
2016-06-27 21:41:38 +02:00
858d372c98
tests: base: Add host name resolution tests.
...
* gnu/tests/base.scm (run-basic-test)["host name resolution",
"host not found"]: New tests.
2016-06-27 21:41:38 +02:00
9009538d84
services: Export more service types.
...
* gnu/services/base.scm (syslog-service-type): Export.
(urandom-seed-service-type): Export.
2016-06-27 21:41:38 +02:00
04101d99ee
services: nscd: Wait for the PID file.
...
* gnu/services/base.scm (nscd-shepherd-service): Pass #:pid-file.
2016-06-27 21:41:38 +02:00
aea7d1d516
gnu: Add orage.
...
* gnu/packages/xfce.scm (orage): New variable.
2016-06-27 12:58:06 -04:00
06961617a1
gnu: python2-orator: Rearrange inputs.
...
* gnu/packages/python.scm (python2-orator)[native-inputs]: Move
python2-ipaddress ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
b26760302a
gnu: python-orator: Rearrange inputs.
...
* gnu/packages/python.scm (python-orator)[native-inputs]: Move
python-arrow, python-blinker, python-cleo, python-fake-factory,
python-inflection, python-lazy-object-proxy, python-pyaml,
python-simplejson, python-wrapt ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
24c9aa1810
gnu: python2-fake-factory: Rearrange inputs.
...
* gnu/packages/python.scm (python2-fake-factory)[native-inputs]: Move
python2-ipaddress ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
bbcd729791
gnu: python-fake-factory: Rearrange inputs.
...
* gnu/packages/python.scm (python-fake-factory)[native-inputs]: Move
python-dateutil-2, python-six ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
d42560bdfa
gnu: python-email-validator: Rearrange inputs.
...
* gnu/packages/python.scm (python-email-validator)[native-inputs]: Move
python-dnspython, python-idna ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
9403150a96
gnu: python-cleo: Rearrange inputs.
...
* gnu/packages/python.scm (python-cleo)[native-inputs]: Move
python-psutil, python-pylev ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
36aed73648
gnu: python-arrow: Rearrange inputs.
...
* gnu/packages/python.scm (python-arrow)[native-inputs]: Move
python-dateutil-2 ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
c8fa3d9b73
gnu: python-pykafka: Rearrange inputs.
...
* gnu/packages/python.scm (python-pykafka)[native-inputs]: Move
python-gevent, python-kazoo, python-tabulate ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
c18899e8cf
gnu: python-kazoo: Rearrange inputs.
...
* gnu/packages/python.scm (python-kazoo)[native-inputs]: Move
six ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
4591217058
gnu: python-twisted: Rearrange inputs.
...
* gnu/packages/python.scm (python-twisted)[native-inputs]: Move
python-zope-interface ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
7a2941a83e
gnu: Add Go 1.4.
...
* gnu/local.mk: Modified file.
* gnu/packages/golang.scm: New file.
Co-authored-by: Efraim Flashner <efraim@flashner.co.il>
Co-authored-by: Andy Wingo <wingo@igalia.com>
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-06-27 14:09:10 +02:00
94ff31572d
gnu: Add khmer.
...
* gnu/packages/bioinformatics.scm (khmer): New variable.
* gnu/packages/patches/khmer-use-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-06-27 21:35:16 +10:00
9ded145717
gnu: Add python-screed.
...
* gnu/packages/bioinformatics.scm (python-screed, python2-screed):
New variables.
2016-06-27 21:16:39 +10:00
095b7fea44
gnu: qttools: Update to 5.6.1-1.
...
* gnu/packages/qt.scm (qttools): Update to 5.6.1-1.
2016-06-27 05:25:32 +03:00
677b98ae68
gnu: qtlocation: Update to 5.6.1-1.
...
* gnu/packages/qt.scm (qtlocation): Update to 5.6.1-1.
2016-06-27 05:25:30 +03:00
a2a256562f
gnu: qtwebchannel: Update to 5.6.1-1.
...
* gnu/packages/qt.scm (qtwebchannel): Update to 5.6.1-1.
2016-06-27 05:25:27 +03:00
33741e16f4
gnu: qtserialport: Update to 5.6.1-1.
...
* gnu/packages/qt.scm (qtserialport): Update to 5.6.1-1.
[inputs]: Add eudev.
2016-06-27 05:25:10 +03:00
66f26a35f1
gnu: qtwayland: Update to 5.6.1-1.
...
* gnu/packages/qt.scm (qtwayland): Update to 5.6.1-1.
2016-06-27 05:25:05 +03:00
99f6f56f4f
gnu: qtmultimedia: Update to 5.6.1-1.
...
* gnu/packages/qt.scm (qtmultimedia): Update to 5.6.1-1.
2016-06-27 05:25:02 +03:00
2743daffab
gnu: qtsensors: Update to 5.6.1-1.
...
* gnu/packages/qt.scm (qtsensors): Update to 5.6.1-1.
2016-06-27 05:25:00 +03:00
fb767debee
gnu: qtwebsockets: Update to 5.6.1-1.
...
* gnu/packages/qt.scm (qtwebsockets): Update to 5.6.1-1.
2016-06-27 05:24:58 +03:00
4254b206b4
gnu: qtconnectivity: Update to 5.6.1-1.
...
* gnu/packages/qt.scm (qtconnectivity): Update to 5.6.1-1.
2016-06-27 05:24:56 +03:00
f3a3210cfd
gnu: qtdeclarative: Update to 5.6.1-1.
...
* gnu/packages/qt.scm (qtdeclarative): Update to 5.6.1-1.
2016-06-27 05:24:53 +03:00
d547a1970d
gnu: qtxmlpatterns: Update to 5.6.1-1.
...
* gnu/packages/qt.scm (qtxmlpatterns): Update to 5.6.1-1.
2016-06-27 05:24:51 +03:00
0835e22816
gnu: qtx11extras: Update to 5.6.1-1.
...
* gnu/packages/qt.scm (qtx11extras): Update to 5.6.1-1.
2016-06-27 05:24:49 +03:00
1c16029b7f
gnu: qtimageformats: Update to 5.6.1-1.
...
* gnu/packages/qt.scm (qtimageformats): Update to 5.6.1-1.
2016-06-27 05:24:46 +03:00
7de7d8a639
gnu: qtsvg: Update to 5.6.1-1.
...
* gnu/packages/qt.scm (qtsvg): Update to 5.6.1-1.
2016-06-27 05:24:44 +03:00
c7386f4e0c
gnu: qtbase: Update to 5.6.1-1.
...
* gnu/packages/qt.scm (qtbase): Update to 5.6.1-1.
2016-06-27 05:24:42 +03:00
f66970a7ed
gnu: qtbase: Add eudev and libinput support.
...
* gnu/packages/qt.scm (qtbase)[inputs]: Add eudev, libinput.
2016-06-27 05:24:40 +03:00
763a8e6e23
gnu: qtbase: Don't propagate mesa.
...
* gnu/packages/qt.scm (qtbase)[propagated-inputs]: Move mesa ...
[inputs]: ... to here.
(qtsvg)[propagated-inputs]: No need to clear propagated-inputs.
2016-06-27 05:24:33 +03:00
9dd674db01
daemon: Rename 'NIX_CONF_DIR' to 'GUIX_CONFIGURATION_DIRECTORY'.
...
Partly fixes <http://bugs.gnu.org/22459 >.
Reported by Jeff Mickey <j@codemac.net> and David Craven <david@craven.ch>.
* nix/libstore/globals.cc (Settings::processEnvironment()): Change
'NIX_CONF_DIR' to 'GUIX_CONFIGURATION_DIRECTORY'.
* nix/local.mk (libstore_a_CPPFLAGS): Likewise.
* guix/config.scm.in (%config-directory): Likewise.
* build-aux/test-env.in: Likewise.
* gnu/packages/patches/hydra-automake-1.15.patch: Likewise.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-06-26 23:11:07 +02:00
4b67053962
gnu: Add starfighter.
...
* gnu/packages/games.scm (starfighter): New variable.
2016-06-26 20:31:55 +08:00
66fd9858f3
gnu: mpv: Update to 0.18.0.
...
* gnu/packages/video.scm (mpv): Update to 0.18.0.
[arguments]: Remove disabled '--enable-gpl3' configure flag.
2016-06-26 07:21:07 +03:00
c2e575185b
gnu: vsearch: Update to 2.0.0.
...
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.0.0.
2016-06-26 12:43:39 +10:00
36c6919c93
gnu: linux-libre: Update to 4.6.3.
...
* gnu/packages/linux.scm (linux-libre): Update to 4.6.3.
2016-06-25 13:13:36 -04:00
18c658f966
gnu: linux-libre-4.4: Update to 4.4.14.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.14.
2016-06-25 13:12:12 -04:00
893d963ae3
gnu: Add opendht.
...
* gnu/packages/crypto.scm (opendht): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-06-25 11:28:53 -04:00
d1ef573dec
gnu: Add msgpack.
...
* gnu/packages/serialization.scm (msgpack): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-06-25 11:28:53 -04:00
5a7441910d
gnu: Add python-orator and python2-orator.
...
* gnu/packages/python.scm (python-orator, python2-orator): New variables.
2016-06-25 22:52:57 +08:00
347175a27c
gnu: Add python-flexmock and python2-flexmock.
...
* gnu/packages/python.scm (python-flexmock, python2-flexmock): New variables.
2016-06-25 22:52:57 +08:00
b49504fd8c
gnu: Add python-pyaml and python2-pyaml.
...
* gnu/packages/python.scm (python-pyaml, python2-pyaml): New variables.
2016-06-25 22:52:57 +08:00
ea92ae01c2
gnu: Add python-fake-factory and python2-fake-factory.
...
* gnu/packages/python.scm (python-fake-factory, python2-fake-factory):
New variables.
2016-06-25 20:49:59 +08:00
8987d91e7f
gnu: Add python-ukpostcodeparser and python2-ukpostcodeparser.
...
* gnu/packages/python.scm (python-ukpostcodeparser)
(python2-ukpostcodeparser): New variables.
2016-06-25 20:49:59 +08:00
22711e2585
gnu: Add python-email-validator and python2-email-validator.
...
* gnu/packages/python.scm (python-email-validator)
(python2-email-validator): New variables.
2016-06-25 20:49:59 +08:00
5477e05f01
gnu: Add python-dnspython and python2-dnspython.
...
* gnu/packages/python.scm (python-dnspython, python2-dnspython):
New variables.
2016-06-25 20:49:59 +08:00
77cadb436b
gnu: Add python-lazy-object-proxy and python2-lazy-object-proxy.
...
* gnu/packages/python.scm (python-lazy-object-proxy)
(python2-lazy-object-proxy): New variables.
2016-06-25 20:49:59 +08:00
f5deff7a03
gnu: Add python-cleo and python2-cleo.
...
* gnu/packages/python.scm (python-cleo, python2-cleo): New variables.
2016-06-25 20:49:59 +08:00
1899556655
gnu: Add python-pylev and python2-pylev.
...
* gnu/packages/python.scm (python-pylev, python2-pylev): New variables.
2016-06-25 20:49:59 +08:00
1f2b62a4fa
gnu: Add python-inflection and python2-inflection.
...
* gnu/packages/python.scm (python-inflection, python2-inflection):
New variables.
2016-06-25 20:49:59 +08:00
ae43baa890
gnu: Add python-arrow and python2-arrow.
...
* gnu/packages/python.scm (python-arrow, python2-arrow): New variables.
2016-06-25 20:49:59 +08:00
9250b0f3bf
gnu: Add python-chai and python2-chai.
...
* gnu/packages/python.scm (python-chai, python2-chai): New variables.
2016-06-25 20:49:59 +08:00
8ea8e8d3c3
guix: python-build-system: Change pypi-uri to use https://pypi.io .
...
* guix/build-system/python.scm (pypi-uri): Use https://pypi.io .
* gnu/packages/python.scm (python-twisted)[uri]: Remove https://pypi.io .
2016-06-25 20:49:59 +08:00
9f25019095
gnu: linux-libre-4.1: Update to 4.1.27.
...
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.27.
2016-06-24 18:33:50 -04:00
3c6e42b3bc
gnu: Add erlang.
...
* gnu/packages/erlang.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
Co-authored by: Leo Famulari <leo@famulari.name>
Co-authored by: Pjotr Prins <pjotr.public12@thebird.nl>
2016-06-24 10:45:26 -04:00
b8a680f778
gnu: java-swt: Update to 4.6.
...
* gnu/packages/java.scm (java-swt): Update to 4.6.
2016-06-24 16:21:54 +02:00
c19a61bb3e
gnu: pari-gp: Update to 2.7.6.
...
* gnu/packages/algebra.scm (pari-gp): Update to 2.7.6.
2016-06-24 13:56:07 +02:00
a9fbe94edc
gnu: Add emacs-writegood-mode.
...
* gnu/packages/emacs.scm (emacs-writegood-mode): New variable.
2016-06-24 09:01:22 +02:00
af4569095f
gnu: Add GNU Diction.
...
* gnu/packages/dictionaries.scm (diction): New variable.
2016-06-24 09:01:22 +02:00
11f2582b81
gnu: imagemagick: Update to 6.9.4-10.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4.10.
2016-06-24 00:51:14 -04:00
125af57e09
tests: basic: Don't hard-code the expected architecture name.
...
* gnu/tests/base.scm (run-basic-test)["uname"]: Don't hard-code the
architecture.
2016-06-23 00:50:24 +02:00
f6d5456b1b
tests: Installation test no longer requires KVM.
...
* gnu/tests/install.scm (%test-installed-os): Use '-enable-kvm' only
when /dev/kvm exists.
2016-06-23 00:12:13 +02:00
c311089b0b
services: Add 'mcron-service'.
...
* gnu/services/mcron.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/tests/base.scm (%mcron-os, %test-mcron): New variables.
(run-mcron-test): New procedure.
* doc/guix.texi (Scheduled Job Execution): New node.
2016-06-22 22:56:06 +02:00
159daace2f
gnu: Add mcron2.
...
* gnu/packages/guile.scm (mcron2): New variable.
2016-06-22 22:56:06 +02:00
c5eef242ce
gnu: xorg.scm: Replace http with https in URLs.
...
* gnu/packages/xorg.scm: Use https for cgit.freedesktop.org,
www.x.org/wiki/, anongit.freedesktop.org.
2016-06-22 21:59:55 +03:00
612fddec34
gnu: haskell.scm: Replace http with https in Hackage, Github.
...
* gnu/packages/haskell.scm: Use https for Hackage, Github urls.
2016-06-22 21:59:44 +03:00
7cc2e1e7e6
gnu: efl: Update to 1.17.2.
...
* gnu/packages/enlightenment.scm (efl): Update to 1.17.2.
2016-06-22 17:42:38 +03:00
da0cef6a2d
gnu: lightning: Fix typo.
...
This is a followup to commit c283b22e93
2016-06-22 11:43:41 +03:00
384bc22ad8
gnu: perl-test-harness: Update to 3.36.
...
* gnu/packages/perl.scm (perl-test-harness): Update to 3.36.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-06-22 11:34:04 +03:00
c283b22e93
gnu: lightning: Move to (gnu packages assembly).
...
* gnu/packages/lightning.scm: Remove. Move 'lightning' to...
* gnu/packages/assembly.scm (lightning): ... here. New variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
2016-06-22 11:16:05 +03:00
b3470031df
gnu: beets: Move propagated-inputs to inputs.
...
* gnu/packages/music.scm (beets)[propagated-inputs]: Replace with ...
[inputs]: ... new field.
2016-06-22 02:38:46 -04:00
88c8d72f3c
gnu: beets: Update to 1.3.18.
...
* gnu/packages/patches/beets-image-test-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/music.scm (beets): Update to 1.3.18.
[source]: Use patch.
2016-06-22 02:38:46 -04:00
69af462496
gnu: vsearch: Update to 0.11.2.
...
* gnu/packages/bioinformatics.scm (vsearch): Update to 0.11.2.
2016-06-22 07:51:12 +10:00
a837997cab
gnu: nasm: Make build bit-reproducible.
...
* gnu/packages/patches/nasm-no-ps-pdf.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/assembly.scm (nasm): Use it. Remove ghostscript, do not
build PS or PDF docs. Makes build bit-reproducible.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-06-21 23:14:05 +02:00
9270298f75
gnu: Add ruby-puma.
...
gnu/packages/ruby.scm (ruby-puma): New variable.
gnu/packages/patches/ruby-puma-ignore-broken-test.patch: New file.
gnu/local.mk (dist_patch_DATA): Add it.
2016-06-21 21:46:45 +10:00
b08134907d
gnu: Add ruby-hoe-git.
...
* gnu/packages/ruby.scm (ruby-hoe-git): New variable.
2016-06-21 21:46:45 +10:00
7b3df1e56e
gnu: Add r-vegan.
...
* gnu/packages/bioinformatics.scm (r-vegan): New variable.
2016-06-21 21:29:17 +10:00
0846620803
gnu: Add r-mgcv.
...
* gnu/packages/statistics.scm (r-mgcv): New variable.
2016-06-21 21:29:17 +10:00
de682e6f0f
gnu: Add r-permute.
...
* gnu/packages/statistics.scm (r-permute): New variable.
2016-06-21 21:29:17 +10:00
Ben Woodcroft