Commit Graph

25136 Commits (15dd85f0c3b362b0a1e41afbcbaa421cb54212fa)

Author SHA1 Message Date
Ricardo Wurmus 420415b057
gnu: r-interactivedisplaybase: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.18.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus a67dd4c5e9
gnu: r-edaseq: Update to 2.14.0.
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.14.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus 749b712677
gnu: r-deseq: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.32.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus 0ebd7a4c9f
gnu: r-aroma-light: Update to 3.10.0.
* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.10.0.
2018-06-02 13:39:11 +02:00
Ricardo Wurmus bdc8b40af2
gnu: r-msnid: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.14.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus 250d78eac9
gnu: r-msnbase: Update to 2.6.1.
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.6.1.
[propagated-inputs]: Add r-mass and r-scales.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus 0f773b90db
gnu: r-pcamethods: Update to 1.72.0.
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.72.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus 7bd2582971
gnu: r-mzid: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.18.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus af8710624d
gnu: r-vsn: Update to 3.48.1.
* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.48.1.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus 5837f1835b
gnu: r-affy: Update to 1.58.0.
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.58.0.
[inputs]: Add zlib.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus 82589f7430
gnu: r-affyio: Update to 1.50.0.
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.50.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus 39cc491790
gnu: r-mzr: Update to 2.14.0.
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.14.0.
[inputs]: Add zlib.
[propagated-inputs]: Add r-rhdf5lib.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus a02b82088f
gnu: r-protgenerics: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.12.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus 9547dd8613
gnu: r-sva: Update to 3.28.0.
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.28.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus 19ad568e79
gnu: r-methylkit: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.6.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus aae4f716da
gnu: r-copywriter: Update to 2.12.0.
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.12.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus 8f94487da7
gnu: r-chipseq: Update to 1.30.0.
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.30.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus 62509bbc81
gnu: r-annotationfilter: Update to 1.4.0.
* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.4.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus d73c5728f3
gnu: r-rhdf5: Update to 2.24.0.
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.24.0.
[arguments]: Remove.
[propagated-inputs]: Remove r-zlibbioc; add r-rhdf5lib.
[inputs]: Remove perl.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus c76e8baf9e
gnu: r-tximport: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.8.0.
2018-06-02 13:39:10 +02:00
Ricardo Wurmus b6c2c8f781
gnu: r-mutationalpatterns: Update to 1.6.1.
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.6.1.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus 72f11ff9c5
gnu: r-bamsignals: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.12.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus 1a08bb8a17
gnu: r-rhtslib: Update to 1.12.1.
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.12.1.
[native-inputs]: Remove autoconf.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus 2c480bb012
gnu: r-zlibbioc: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.26.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus 7e6537e257
gnu: r-motifrg: Update to 1.24.0.
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.24.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus 8217c2d0bc
gnu: r-seqlogo: Update to 1.46.0.
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.46.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus 17d35de73f
gnu: r-genomation: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.12.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus 5229cedf57
gnu: r-seqpattern: Update to 1.12.0.
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.12.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus 25d1df5764
gnu: r-impute: Update to 1.54.0.
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.54.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus 89ef133ebd
gnu: r-bsgenome: Update to 1.48.0.
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.48.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus f2eb2e453e
gnu: r-topgo: Update to 2.32.0.
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.32.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus 2f66fecd89
gnu: r-graph: Update to 1.58.0.
* gnu/packages/bioinformatics.scm (r-graph): Update to 1.58.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus b4ad4ec6b4
gnu: r-genomicfeatures: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.32.0.
[propagated-inputs]: Remove r-rmysql.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus a30df29768
gnu: r-rtracklayer: Update to 1.40.2.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.40.2.
[native-inputs]: Add pkg-config.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus 90102bd06b
gnu: r-genomicalignments: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.16.0.
2018-06-02 13:39:09 +02:00
Ricardo Wurmus 9bf4110ea1
gnu: r-summarizedexperiment: Update to 1.10.1.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.10.1.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus 82f593f378
gnu: r-delayedarray: Update to 0.6.0.
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.6.0.
[propagated-inputs]: Add r-biocparallel.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus d2367a89dd
gnu: r-rsamtools: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.32.0.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus 942655add1
gnu: r-biostrings: Update to 2.48.0.
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.48.0.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus e6eac58d4c
gnu: r-biocparallel: Update to 1.14.1.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.14.1.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus 1763cba80e
gnu: r-biomart: Update to 2.36.1.
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.36.1.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus 77f66feee7
gnu: r-annotationdbi: Update to 1.42.1.
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.42.1.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus 6fd71f1b6a
gnu: r-biobase: Update to 2.40.0.
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.40.0.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus e51afc63b7
gnu: r-genomicranges: Update to 1.32.3.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.32.3.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus c2401d06c5
gnu: r-xvector: Update to 0.20.0.
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.20.0.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus 0a465e5694
gnu: r-limma: Update to 3.36.1.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.36.1.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus d358a5a0c1
gnu: r-variantannotation: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.26.0.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus 4639025284
gnu: r-edger: Update to 3.22.2.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.22.2.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus 953c8b18f8
gnu: r-genomeinfodb: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.16.0.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus 8b44c28f5d
gnu: r-iranges: Update to 2.14.10.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.14.10.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus 33cd15fa84
gnu: r-s4vectors: Update to 0.18.2.
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.18.2.
2018-06-02 13:39:08 +02:00
Ricardo Wurmus 607acf3194
gnu: r-dnacopy: Update to 1.54.0.
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.54.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus 3679a2fec4
gnu: r-bioccheck: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.16.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus dc6c168ac1
gnu: r-biocstyle: Update to 2.8.2.
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.8.2.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus e5f52b692a
gnu: r-biocviews: Update to 1.48.0.
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.48.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus 97af51ef40
gnu: r-biocinstaller: Update to 1.30.0.
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.30.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus e5907a44e1
gnu: r-biocgenerics: Update to 0.26.0.
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.26.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus 9370b8ee9f
gnu: r-grohmm: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.14.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus 712fe39680
gnu: r-systempiper: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.14.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus eabe78faca
gnu: r-shortread: Update to 1.38.0.
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.38.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus 9da8e275ca
gnu: r-gostats: Update to 2.46.0.
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.46.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus d8410d6610
gnu: r-category: Update to 2.46.0.
* gnu/packages/bioinformatics.scm (r-category): Update to 2.46.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus f1094f50a7
gnu: r-gseabase: Update to 1.42.0.
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.42.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus 9177ac2295
gnu: r-rbgl: Update to 1.56.0.
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.56.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus 5516db9e70
gnu: r-annotationforge: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.22.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus 16da69b5e6
gnu: r-dexseq: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.26.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus 51c1f96ebc
gnu: r-deseq2: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.20.0.
2018-06-02 13:39:07 +02:00
Ricardo Wurmus 41657b15f4
gnu: r-genefilter: Update to 1.62.0.
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.62.0.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus 4d70c8c486
gnu: r-geneplotter: Update to 1.58.0.
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.58.0.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus 14e9235f0c
gnu: r-copynumber: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-copynumber): Update to 1.20.0.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus 02be818044
gnu: r-annotate: Update to 1.58.0.
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.58.0.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus 81b0181b6f
gnu: r-qdnaseq: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.16.0.
[propagated-inputs]: Add r-biocparallel.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus 5c0df206cf
gnu: r-cghcall: Update to 2.42.0.
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.42.0.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus 205df4a4cb
gnu: r-cghbase: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.40.0.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus 6748708883
gnu: r-marray: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-marray): Update to 1.58.0.
[propagated-inputs]: Remove r-biobase.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus f794e85daa
gnu: r-chippeakanno: Update to 3.14.0.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.14.0.
[propagated-inputs]: Add r-biostrings, r-delayedarray, r-genomicranges,
r-iranges, and r-s4vectors.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus 43734b4727
gnu: r-ripseeker: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.20.0.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus 45bbccf4e7
gnu: r-diffbind: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.8.0.
[propagated-inputs]: Add r-genomicranges, r-ggplot2, and
r-summarizedexperiment.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus 72427c721d
gnu: r-regioner: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.12.0.
[propagated-inputs]: Add r-s4vectors.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus 2f5b3d8e90
gnu: r-hpar: Update to 1.22.2.
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.22.2.
2018-06-02 13:39:06 +02:00
Ricardo Wurmus d22546cf80
gnu: r-minimal: Update to 3.5.0.
* gnu/packages/statistics.scm (r-with-tests): New variable derived from
r-minimal; update to 3.5.0.
[arguments]: Build recommended packages.
(r-minimal): Inherit from r-with-tests.
[arguments]: Disable recommended packages and tests.
2018-06-02 13:39:06 +02:00
Clément Lassieur d5452aa201
gnu: emacs-elfeed: Update to 3.0.0.
* gnu/packages/emacs.scm (emacs-elfeed): Update to 3.0.0.
2018-06-02 13:05:08 +02:00
Mark H Weaver 1a3e3162ac
gnu: icecat: Add more fixes from upstream esr52.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from
the upstream mozilla-esr52 repository.
2018-06-01 12:51:43 -04:00
Ricardo Wurmus 65a9f6b6cf
gnu: qtbase: Fix build on older kernels.
* gnu/packages/qt.scm (qtbase)[arguments]: Add configure flags
"-no-feature-getentropy" and "-no-feature-renameat2".
2018-06-01 17:33:25 +02:00
Robin Templeton 514026d7de
gnu: rust: Add support for building 32-bit packages on 64-bit hosts.
* gnu/packages/rust.scm (rust-bootstrap, rust-1.23): Use
nix-system->gnu-triplet to determine the system type.
(rust-1.19): Use readelf instead of nm in the atomic-lock-free test.
(rust-1.23): Disable the cargo_test_env test. Disable parallel execution of
tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:27 +02:00
Timothy Sample a078a6ec3b
gnu: Add git-annex.
* gnu/packages/version-control.scm (git-annex): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:27 +02:00
Timothy Sample 4e5d9bf20e
gnu: Add ghc-disk-free-space.
* gnu/packages/haskell.scm (ghc-disk-free-space): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:27 +02:00
Timothy Sample 1ea3971992
gnu: ghc-psqueues: Allow building with newer versions of QuickCheck.
* gnu/packages/haskell.scm (ghc-psqueues)[arguments]: Add configure
flag to allow newer versions of QuickCheck.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:27 +02:00
Timothy Sample 6950a45073
gnu: Add ghc-safesemaphore.
* gnu/packages/haskell.scm (ghc-safesemaphore): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:27 +02:00
Timothy Sample 92c2097bc2
gnu: Add ghc-esqueleto.
* gnu/packages/haskell.scm (ghc-esqueleto): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:26 +02:00
Timothy Sample a39e6faee9
gnu: Add ghc-ifelse.
* gnu/packages/haskell.scm (ghc-ifelse): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:26 +02:00
Timothy Sample e3aae496f9
gnu: Add ghc-feed.
* gnu/packages/haskell.scm (ghc-feed): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:26 +02:00
Timothy Sample 4c798726b4
gnu: Add ghc-bloomfilter.
* gnu/package/haskell.scm (ghc-bloomfilter): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-06-01 13:50:26 +02:00
Rouby Pierre-Antoine d6a4dfec90
gnu: Add hpcguix-web.
* gnu/package/web.scm (hpcguix-web): New variable.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-06-01 13:50:26 +02:00
Ludovic Courtès 5ede50b850
gnu: emacs-w3m: Update and allow builds with Emacs 26.
* gnu/packages/emacs.scm (emacs-w3m)[source]: Grab the source from
github.com.
[native-inputs]: Add TEXINFO.
[arguments]: Add 'support-emacs!' phase.  In 'patch-exec-paths' phase,
make w3m.el and w3m-image.el writable.  Remove substitution for
'w3m-image-viewer', which no longer exists.
2018-06-01 13:50:26 +02:00
Stefan Stefanović 8674abb1dd
gnu: sddm: Fix CMake build.
* gnu/packages/display-managers.scm (sddm): Fix CMake build.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/patches/sddm-fix-build-with-qt-5.11-1024.patch: New file.

Signed-off-by: Rutger Helling <rhelling@mykolab.com>
2018-06-01 12:17:00 +02:00
Leo Famulari e90322d201
gnu: prosody: Update to 0.10.2 [fixes CVE-2018-10847].
* gnu/packages/messaging.scm (prosody): Update to 0.10.2.
2018-05-31 20:31:46 -04:00
Konrad Hinsen 555ab0853b
gnu: Add emacs-zotxt.
* gnu/packages/emacs.scm (emacs-zotxt): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31 18:13:09 +02:00
Konrad Hinsen 45dca193a4
gnu: Add emacs-org-caldav.
* gnu/packages/emacs.scm (emacs-org-caldav): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31 18:13:08 +02:00
Konrad Hinsen ec8a9892d1
gnu: Add python-bigfloat.
* gnu/packages/python.scm (python-bigfloat, python2-bigfloat): New
variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31 18:13:08 +02:00
Fis Trivial 73d854232f
gnu: bear: Fix python path.
* gnu/packages/build-tools.scm (bear)
[inputs]: Add python-wrapper.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-05-31 18:13:08 +02:00
Ricardo Wurmus 404e5c7d7d
gnu: r-servr: Update to 0.10.
* gnu/packages/web.scm (r-servr): Update to 0.10.
[native-inputs]: Remove r-rcpp.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus ce8b9e3b1c
gnu: r-seurat: Update to 2.3.1.
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.1.
[propagated-inputs]: Remove r-gridextra; add r-reticulate.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 508dd24abe
gnu: r-shiny: Update to 1.1.0.
* gnu/packages/web.scm (r-shiny): Update to 1.1.0.
[source]: Fetch from git.
[propagated-inputs]: Add r-crayon.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus eb0d599a67
gnu: r-rjson: Update to 0.2.19.
* gnu/packages/web.scm (r-rjson): Update to 0.2.19.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 71644c0ee8
gnu: r-htmltable: Update to 1.12.
* gnu/packages/web.scm (r-htmltable): Update to 1.12.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus beb0878fe5
gnu: r-directlabels: Update to 2018.05.22.
* gnu/packages/statistics.scm (r-directlabels): Update to 2018.05.22.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 089e037638
gnu: r-ranger: Update to 0.10.0.
* gnu/packages/statistics.scm (r-ranger): Update to 0.10.0.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 14bb6f5f83
gnu: r-tclust: Update to 1.4-1.
* gnu/packages/statistics.scm (r-tclust): Update to 1.4-1.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 9fad62743c
gnu: r-caret: Update to 6.0-80.
* gnu/packages/statistics.scm (r-caret): Update to 6.0-80.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 9bcc68fbf6
gnu: r-quantreg: Update to 5.36.
* gnu/packages/statistics.scm (r-quantreg): Update to 5.36.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 13dc492435
gnu: r-rrcov: Update to 1.4-4.
* gnu/packages/statistics.scm (r-rrcov): Update to 1.4-4.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 6f96c2d89e
gnu: r-ggthemes: Update to 3.5.0.
* gnu/packages/statistics.scm (r-ggthemes): Update to 3.5.0.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 366dd8d7cb
gnu: r-runit: Update to 0.4.32.
* gnu/packages/statistics.scm (r-runit): Update to 0.4.32.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus edb29f2986
gnu: r-purrr: Update to 0.2.5.
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.5.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus e94d827440
gnu: r-tidyr: Update to 0.8.1.
* gnu/packages/statistics.scm (r-tidyr): Update to 0.8.1.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 1957c20e0c
gnu: r-synchronicity: Update to 1.3.4.
* gnu/packages/statistics.scm (r-synchronicity): Update to 1.3.4.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 7da0790e2a
gnu: r-rngtools: Update to 1.3.1.
* gnu/packages/statistics.scm (r-rngtools): Update to 1.3.1.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 3a6051659d
gnu: r-pkgmaker: Update to 0.27.
* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.27.
[propagated-inputs]: Add r-bibtex, r-magrittr, r-stringi, and r-withr.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus b4ca0076bd
gnu: r-lambda-r: Update to 1.2.3.
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.3.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus a52bb97a79
gnu: r-plotrix: Update to 3.7-2.
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-2.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 1ce6be5ee2
gnu: r-data-table: Update to 1.11.4.
* gnu/packages/statistics.scm (r-data-table): Update to 1.11.4.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 2d7758c1d6
gnu: r-rlang: Update to 0.2.1.
* gnu/packages/statistics.scm (r-rlang): Update to 0.2.1.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 624283a107
gnu: r-knitrbootstrap: Update to 1.0.2.
* gnu/packages/statistics.scm (r-knitrbootstrap): Update to 1.0.2.
[propagated-inputs]: Add r-markdown.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 22cdc16fa4
gnu: r-pheatmap: Update to 1.0.10.
* gnu/packages/statistics.scm (r-pheatmap): Update to 1.0.10.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 99b225f3eb
gnu: r-bit: Update to 1.1-14.
* gnu/packages/statistics.scm (r-bit): Update to 1.1-14.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 3c441be0f3
gnu: r-kernlab: Update to 0.9-26.
* gnu/packages/machine-learning.scm (r-kernlab): Update to 0.9-26.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus ad016826c9
gnu: r-rmysql: Update to 0.10.15.
* gnu/packages/databases.scm (r-rmysql): Update to 0.10.15.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus aea3be250c
gnu: r-mice: Update to 3.0.0.
* gnu/packages/cran.scm (r-mice): Update to 3.0.0.
[propagated-inputs]: Add r-broom, r-dplyr, r-mitml, and r-rlang.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 6034a62a1b
gnu: r-callr: Update to 2.0.4.
* gnu/packages/cran.scm (r-callr): Update to 2.0.4.
[propagated-inputs]: Add r-processx; remove r-assertthat, r-crayon, r-debugme,
and r-testthat.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus a8b4677b7c
gnu: r-openxlsx: Update to 4.1.0.
* gnu/packages/cran.scm (r-openxlsx): Update to 4.1.0.
[propagated-inputs]: Add r-zip.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus e86d3cc501
gnu: r-shinyace: Update to 0.3.1.
* gnu/packages/cran.scm (r-shinyace): Update to 0.3.1.
[propagated-inputs]: Add r-jsonlite.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus a80606308a
gnu: r-processx: Update to 3.1.0.
* gnu/packages/cran.scm (r-processx): Update to 3.1.0.
[propagated-inputs]: Remove r-debugme; add r-testthat.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 9944399ae3
gnu: r-ggally: Update to 1.4.0.
* gnu/packages/cran.scm (r-ggally): Update to 1.4.0.
[inputs]: Add libressl.
[propagated-inputs]: Add r-rlang.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 13079c143b
gnu: r-psych: Update to 1.8.4.
* gnu/packages/cran.scm (r-psych): Update to 1.8.4.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus aadb9ee6df
gnu: r-pillar: Update to 1.2.3.
* gnu/packages/cran.scm (r-pillar): Update to 1.2.3.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 65ea783f6c
gnu: r-utf8: Update to 1.1.4.
* gnu/packages/cran.scm (r-utf8): Update to 1.1.4.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus c36745cf95
gnu: r-ggjoy: Update to 0.4.1.
* gnu/packages/cran.scm (r-ggjoy): Update to 0.4.1.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus cda93e8399
gnu: r-dtw: Update to 1.20-1.
* gnu/packages/cran.scm (r-dtw): Update to 1.20-1.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus fabf09934b
gnu: r-ica: Update to 1.0-2.
* gnu/packages/cran.scm (r-ica): Update to 1.0-2.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 1e31e8bc74
gnu: r-sm: Update to 2.2-5.5.
* gnu/packages/cran.scm (r-sm): Update to 2.2-5.5.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus da5cca36b7
gnu: r-hardyweinberg: Update to 1.6.1.
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.1.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 0759d87dfc
gnu: r-ggrepel: Update to 0.8.0.
* gnu/packages/cran.scm (r-ggrepel): Update to 0.8.0.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus b13b56743b
gnu: r-cvst: Update to 0.2-2.
* gnu/packages/cran.scm (r-cvst): Update to 0.2-2.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 975ea10d6f
gnu: r-energy: Update to 1.7-4.
* gnu/packages/cran.scm (r-energy): Update to 1.7-4.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 90f1ecb939
gnu: r-emdbook: Update to 1.3.10.
* gnu/packages/cran.scm (r-emdbook): Update to 1.3.10.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 0acbf8bbb7
gnu: r-inline: Update to 0.3.15.
* gnu/packages/cran.scm (r-inline): Update to 0.3.15.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 207c497e14
gnu: r-ff: Update to 2.2-14.
* gnu/packages/cran.scm (r-ff): Update to 2.2-14.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus c81497b141
gnu: r-rcpp: Update to 0.12.17.
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.17.
2018-05-31 13:21:31 +02:00
Ricardo Wurmus 5479e3e639
gnu: r-abbyyr: Update to 0.5.4.
* gnu/packages/cran.scm (r-abbyyr): Update to 0.5.4.
2018-05-31 13:21:31 +02:00