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29994 Commits

Author SHA1 Message Date
Leo Famulari 613ef763a5
Merge branch 'master' into staging 2018-03-06 13:39:12 -05:00
Leo Famulari 8a325748fb
gnu: isc-dhcp: Update to 4.3.6-P1 [fixes CVE-2018-{5732,5733}]. 
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.6-P1.
 2018-03-06 13:34:20 -05:00
Leo Famulari 3b5262865c
gnu: syncthing: Update to 0.14.45. 
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.45.
[inputs]: Remove go-github-com-xtaci-kcp-go,
go-github-com-ccding-go-stun, and go-github-com-xtaci-smux. Add
go-github-com-pkg-errors.
 2018-03-06 13:24:20 -05:00
Leo Famulari 01794ffce0
gnu: Remove go-github-com-templexxx-xor. 
* gnu/packages/syncthing.scm (go-github-com-templexxx-xor): Remove variable.
 2018-03-06 13:24:20 -05:00
Leo Famulari 6482d30472
gnu: Remove go-github-com-templexxx-cpufeat. 
* gnu/packages/syncthing.scm (go-github-com-templexxx-cpufeat): Remove
variable.
 2018-03-06 13:24:20 -05:00
Leo Famulari 7d02ae4b85
gnu: Remove go-github-com-tjfoc-gmsm-sm4. 
* gnu/packages/syncthing.scm (go-github-com-tjfoc-gmsm-sm4): Remove variable.
 2018-03-06 13:24:19 -05:00
Leo Famulari 7915ef0bff
gnu: Remove go-github-com-klauspost-reedsolomon. 
* gnu/packages/syncthing.scm (go-github-com-klauspost-reedsolomon): Remove
variable.
 2018-03-06 13:24:19 -05:00
Leo Famulari abb8973544
gnu: Remove go-github-com-klauspost-cpuid. 
* gnu/packages/syncthing.scm (go-github-com-klauspost-cpuid): Remove variable.
 2018-03-06 13:24:19 -05:00
Leo Famulari eaca421063
gnu: Remove go-github-com-ccding-go-stun. 
* gnu/packages/syncthing.scm (go-github-com-ccding-go-stun): Remove variable.
 2018-03-06 13:24:19 -05:00
Leo Famulari bb0a84f89d
gnu: Remove go-github-com-xtaci-kcp-go. 
* gnu/packages/syncthing.scm (go-github-com-xtaci-kcp-go): Remove variable.
 2018-03-06 13:24:19 -05:00
Leo Famulari 78f19a4754
gnu: Remove go-github-com-xtaci-smux. 
* gnu/packages/syncthing.scm (go-github-com-xtaci-smux): Remove variable.
 2018-03-06 13:24:15 -05:00
Marius Bakke 77412c45b1
gnu: re2: Update to 2018-03-01. 
* gnu/packages/regex.scm (re2): Update to 2018-03-01.
 2018-03-06 18:23:42 +01:00
Marius Bakke 37204750b1
gnu: feh: Update to 2.25. 
* gnu/packages/image-viewers.scm (feh): Update to 2.25.
 2018-03-06 18:22:26 +01:00
Marius Bakke 6836c228ae
gnu: iceauth: Update to 1.0.8. 
* gnu/packages/xorg.scm (iceauth): Update to 1.0.8.
 2018-03-06 18:16:51 +01:00
Marius Bakke 6f1f8d1312
gnu: python-django: Update to 1.11.11 [fixes CVE-2018-7536 and CVE-2018-7537]. 
See <https://www.djangoproject.com/weblog/2018/mar/06/security-releases/> for
more information about the vulnerabilities.

* gnu/packages/django.scm (python-django): Update to 1.11.11.
 2018-03-06 17:38:12 +01:00
Ricardo Wurmus c072cf57b9
gnu: samtools: Update to 1.7. 
* gnu/packages/bioinformatics.scm (samtools): Update to 1.7.
 2018-03-06 16:03:04 +01:00
Ricardo Wurmus 727d847980
gnu: htslib: Update to 1.7. 
* gnu/packages/bioinformatics.scm (htslib): Update to 1.7.
[arguments]: Remove field.
 2018-03-06 16:03:04 +01:00
Ricardo Wurmus e325c89076
gnu: r-rhdf5: Make build reproducible. 
* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Remove timestamp and
host system information from settings file.
 2018-03-06 16:03:04 +01:00
Ricardo Wurmus fe58ab013b
gnu: r-lambda-r: Run unit tests. 
* gnu/packages/statistics.scm (r-lambda-r)[native-inputs]: Add r-runit.
[arguments]: Add build phase to delete test logs.
 2018-03-06 16:03:04 +01:00
Ricardo Wurmus 08ddb98aef
gnu: r-gtools: Make output deterministic. 
* gnu/packages/statistics.scm (r-gtools)[arguments]: Add build phase to avoid
running tempdir at build time.
 2018-03-06 16:03:04 +01:00
Ludovic Courtès 7949c140b1
ui: 'load*' no longer fails on Guile 2.2.3 upon EACCES or similar. 
Previously, if ~/.cache was not write-accessible, 'guix' would exit with
code 1 without printing any message.  That was because the 'make-stack'
call would fail since the exception (a 'system-error) came from
'compile-file', which was called at a point where TAG wasn't installed
yet.  Secondly, to mimick auto-compilation behavior, we just swallow
'system-error raised by 'compile-file'.

Reported by Clément Lassieur.

* guix/ui.scm (load*): Move 'compile-file' call in the dynamic extent of
TAG.  Catch 'system-error around it and ignore it.
 2018-03-06 10:50:39 +01:00
Oleg Pykhalov 5ad13e6cdf
gnu: emacs-transmission: Update to 0.12.1. 
* gnu/packages/emacs.scm (emacs-transmission): Update to 0.12.1.
 2018-03-06 12:09:02 +03:00
Oleg Pykhalov 69611d3eac
gnu: haskell-mode: Fix find emacs-stream elisp directory. 
* gnu/packages/emacs.scm (haskell-mode)[arguments]: Find only directories with
"\\.el$" in ‘el-dir’.
 2018-03-06 10:34:59 +03:00
Rutger Helling cee03b267c
gnu: ovmf: Fix build and add FIXME. 
* gnu/packages/firmware.scm (ovmf): Replace 'invoke' with 'system*'. Add FIXME
about failing script.
 2018-03-06 08:27:07 +01:00
Gábor Boskovits 0f2778029a
gnu: java-ops4j-pax-tinybundles: Use distribution bndlib version. 
* gnu/packages/java.scm (java-ops4j-pax-tinybundles)[arguments]<#:phases>:
Modify fix-version to use the distibution version of java-aqute-bndlib.
 2018-03-05 20:42:48 +01:00
Tobias Geerinckx-Rice c8213ffc52
gnu: perl-email-address: Update to 1.909. 
* gnu/packages/perl.scm (perl-email-address): Update to 1.909.
 2018-03-05 17:32:11 +01:00
Tobias Geerinckx-Rice 1c3de94cff
gnu: perl-sub-quote: Update to 2.005000. 
* gnu/packages/xml.scm (perl-sub-quote): Update to 2.005000.
 2018-03-05 17:32:11 +01:00
Tobias Geerinckx-Rice 503a00597b
gnu: perl-xml-compile-cache: Update to 1.06. 
* gnu/packages/xml.scm (perl-xml-compile-cache): Update to 1.06.
 2018-03-05 17:32:11 +01:00
Tobias Geerinckx-Rice b5de208e84
gnu: perl-xml-rss: Update to 1.60. 
* gnu/packages/xml.scm (perl-xml-rss): Update to 1.60.
 2018-03-05 17:32:11 +01:00
Tobias Geerinckx-Rice 437e5fae13
gnu: editres: Update to 1.0.7. 
* gnu/packages/xorg.scm (editres): Update to 1.0.7.
 2018-03-05 17:32:10 +01:00
Tobias Geerinckx-Rice cc7a4bbd27
gnu: tocc, libtocc: Use HTTPS home page. 
* gnu/packages/search.scm (libtocc, tocc)[home-page]: Use HTTPS.
 2018-03-05 17:32:10 +01:00
Tobias Geerinckx-Rice 55b7cd10c2
gnu: perl-io-socket-ip: Update to 0.39. 
* gnu/packages/web.scm (perl-io-socket-ip): Update to 0.39.
 2018-03-05 17:32:10 +01:00
Tobias Geerinckx-Rice 530df311ac
gnu: perl-www-mechanize: Update to 1.87. 
* gnu/packages/web.scm (perl-www-mechanize): Update to 1.87.
 2018-03-05 17:32:09 +01:00
Tobias Geerinckx-Rice 9599339c59
gnu: openvpn: Mark up description. 
* gnu/packages/vpn.scm (openvpn)[description]: Use @dfn.
 2018-03-05 17:32:09 +01:00
Tobias Geerinckx-Rice 0d34993a65
gnu: openvpn: Update to 2.4.5. 
* gnu/packages/vpn.scm (openvpn): Update to 2.4.5.
 2018-03-05 17:32:09 +01:00
Tobias Geerinckx-Rice 211748d475
gnu: papi: Use HTTPS home page. 
* gnu/packages/profiling.scm (papi)[home-page]: Use HTTPS.
 2018-03-05 17:32:08 +01:00
Tobias Geerinckx-Rice f7c870f78a
gnu: papi: Fix documentation location. 
* gnu/packages/profiling.scm (papi)[arguments]: Install ‘documentation’
to a customary subdirectory of /share/doc.
 2018-03-05 17:32:08 +01:00
Rutger Helling 0ebc1b934d
gnu: xpra: Update to 2.2.5. 
* gnu/packages/xorg.scm (xpra): Update to 2.2.5.
 2018-03-05 12:29:37 +01:00
Ludovic Courtès f44c7aaccd
ui: Better workaround for lack of '%fresh-auto-compile' on 2.2.3. 
Fixes <https://bugs.gnu.org/29226> for the most part.

* guix/ui.scm (load*): Add call to 'compile-file' on 2.2.3.
 2018-03-05 10:54:45 +01:00
Ludovic Courtès f285b17b35
nls: Add Simplified Chinese translation. 2018-03-05 10:41:18 +01:00
Ludovic Courtès bdbece9055
build: Default to berlin.guixsd.org substitutes on aarch64. 
Suggested by Efraim Flashner <efraim@flashner.co.il>.

* config-daemon.ac: Set 'guix_substitute_urls' to berlin.guixsd.org on
aarch64.
 2018-03-05 10:41:18 +01:00
Ludovic Courtès 234d7ef567
build: Always use https substitute URLs. 
* config-daemon.ac: Remove GUILE_MODULE_AVAILABLE check for (gnutls).
 2018-03-05 10:41:18 +01:00
Ludovic Courtès ca041ec1a3
doc: Adjust 'xset -fp' command to avoid symlinks. 
Fixes <https://bugs.gnu.org/30655>.
Reported by Marco van Hulten <marco@hulten.org>.

* doc/guix.texi (Application Setup): Adjust 'xset +fp' example.
 2018-03-05 10:41:18 +01:00
Mark H Weaver 6a4eaafee0
gnu: linux-libre@4.14: Update to 4.14.24. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.24.
(%linux-libre-4.14-hash): Update hash.
 2018-03-05 03:43:45 -05:00
Mark H Weaver ee483a5626
gnu: linux-libre@4.9: Update to 4.9.86. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.86.
 2018-03-05 03:43:02 -05:00
Mark H Weaver 88b1a38e26
gnu: linux-libre@4.4: Update to 4.4.120. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.120.
 2018-03-05 03:42:07 -05:00
Christopher Baines 68d70f6ae3
gnu: Add emacs-terraform-mode. 
* gnu/packages/emacs.scm (emacs-terraform-mode): New variable.
 2018-03-05 07:48:49 +00:00
Christopher Baines dc97f7e20e
gnu: Add emacs-hcl-mode. 
* gnu/packages/emacs.scm (emacs-hcl-mode): New variable.
 2018-03-05 07:48:48 +00:00
Efraim Flashner 16718b6776
services: Add openntpd service. 
* gnu/packages/ntp.scm (openntpd)[arguments]: Add 'configure-flags to
set openntpd daemon's user and localstatedir. Add a custom phase to not
try to create said directory at install time.
* gnu/services/networking.scm (<openntpd-configuration>): New record type.
(openntpd-shepherd-service, openntpd-service-activation): New procedures.
(openntpd-service-type): New variable.
* doc/guix.texi (Networking Services): Add openntpd documentation.
 2018-03-05 08:46:28 +02:00
Tobias Geerinckx-Rice ac1a9ce8b0
gnu: papi: Update phase style. 
* gnu/packages/profiling.scm (papi)[arguments]: Substitute INVOKE for
SYSTEM*, end phases with #t, and don't explicitly install LICENSE.txt.
 2018-03-04 18:03:46 +01:00