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15682 Commits

Author SHA1 Message Date
Ricardo Wurmus 16a8bd3194
gnu: r-rtracklayer: Update to 1.34.1. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.34.1.
 2016-11-03 19:01:46 +01:00
Ricardo Wurmus c15ae9b008
gnu: r-biocparallel: Update to 1.8.1. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.8.1.
 2016-11-03 19:01:46 +01:00
Ricardo Wurmus 5b3b2d2f02
gnu: r-limma: Update to 3.30.2. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.2.
 2016-11-03 19:01:46 +01:00
Ricardo Wurmus ed3054231d
gnu: r-edger: Update to 3.16.1. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.1.
 2016-11-03 19:01:45 +01:00
Ricardo Wurmus e71659162b
gnu: r-hmisc: Update to 4.0.0. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0.0.
[propagated-inputs]: Add r-htmltable, r-htmltools, r-viridis,
r-survival.
 2016-11-03 19:01:45 +01:00
Ricardo Wurmus f158b92caf
gnu: r-r-oo: Update to 1.21.0. 
* gnu/packages/statistics.scm (r-r-oo): Update to 1.21.0.
 2016-11-03 19:01:45 +01:00
Ricardo Wurmus f890981690
gnu: r-openssl: Update to 0.9.5. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.5.
 2016-11-03 19:01:45 +01:00
Ricardo Wurmus fbe5161c7d
gnu: r-checkmate: Update to 1.8.2. 
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.2.
 2016-11-03 19:01:45 +01:00
Ricardo Wurmus 572e1a0ca7
gnu: r-acepack: Update to 1.4.1. 
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.1.
 2016-11-03 19:01:44 +01:00
Ricardo Wurmus 054a9a786b
gnu: r-gdtools: Update to 0.1.1. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.1.
[propagated-inputs]: Add r-withr.
 2016-11-03 19:01:44 +01:00
Ricardo Wurmus d13a4e2575
gnu: r-proto: Update to 1.0.0. 
* gnu/packages/statistics.scm (r-proto): Update to 1.0.0.
 2016-11-03 19:01:44 +01:00
Ricardo Wurmus ebbd4d0bfd
gnu: Add r-survival. 
* gnu/packages/statistics.scm (r-survival): New variable.
 2016-11-03 19:01:44 +01:00
Ricardo Wurmus ac3265abad
gnu: Add r-htmltable. 
* gnu/packages/web.scm (r-htmltable): New variable.
 2016-11-03 19:01:44 +01:00
Kei Kebreau b81245ccb3
[PATCH] gnu: Add libjxr. 
* gnu/packages/image.scm (libjxr): New variable.
* gnu/packages/patches/libjxr-fix-function-signature.patch: New file.
* gnu/packages/patches/libjxr-fix-typos.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patches.
 2016-11-03 13:43:23 -04:00
Ricardo Wurmus e3100110ce
import: cran: Fix off-by-one error. 
* guix/import/cran.scm (package->upstream-name): Do not include leading
slash in upstream name URL.
 2016-11-03 16:03:28 +01:00
Danny Milosavljevic b054b26a48
gnu: sunxi-tools: Update to 1.4.1. 
* gnu/packages/admin.scm (sunxi-tools): Update to 1.4.1.
[arguments]: Add "CC=gcc" "all" to #:make-flags.  Remove 'fix-Makefile'
phase.  Add 'install' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-11-03 15:58:04 +01:00
Ludovic Courtès 6cb02e6e00
tests: 'make check-system' prints the "build trace". 
* build-aux/run-system-tests.scm (run-system-tests): Pass
  #:print-build-trace to 'set-build-options*'.
 2016-11-03 15:44:49 +01:00
Arun Isaac 5d68e9d620
gnu: Add pdf2svg. 
* gnu/packages/pdf.scm (pdf2svg): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-11-03 14:33:50 +01:00
ng0 05e3865e07
gnu: gnurl: Update to 7.51.0 [fixes CVE-2016-{8615..8625}]. 
* gnu/packages/gnunet.scm (gnurl): Update to 7.51.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-11-02 23:16:11 -04:00
Alex Sassmannshausen e681e347c4
gnu: Add perl-getopt-long. 
* gnu/packages/perl.scm (perl-getopt-long): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-11-02 14:23:24 +00:00
Marius Bakke cbf5889fe5
gnu: curl: Update replacement to 7.51.0 [fixes CVE-2016-{8615..8625}]. 
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.51.0.
(curl-7.50.3): Replace with ...
(curl-7.51.0): ... this.
 2016-11-02 12:01:37 +00:00
Mark H Weaver ac1dc6d12f
gnu: linux-libre: Update to 4.8.6. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.6.
 2016-11-02 07:31:53 -04:00
Mark H Weaver b3097a71c5
gnu: linux-libre@4.4: Update to 4.4.30. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.30.
 2016-11-02 07:29:28 -04:00
Ricardo Wurmus d439aa36ce
gnu: perl-test-simple: Update to 1.302062. 
* gnu/packages/perl.scm (perl-test-simple): Update to 1.302062.
 2016-11-02 11:51:46 +01:00
Marius Bakke 24dfc13bfa
gnu: re2: Update to 2016-11-01. 
* gnu/packages/regex.scm (re2): Update to 2016-11-01.
 2016-11-02 05:34:09 +00:00
Leo Famulari 86c61a6bd1
gnu: isc-dhcp: Update to 4.3.5 [fixes CVE-2016-8864]. 
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.5. Update bundled
'bind' to 9.9.9-P4.
 2016-11-01 21:46:09 -04:00
Leo Famulari e777d07db9
gnu: iproute2: Update to 4.8.0. 
* gnu/packages/linux.scm (iproute2): Update to 4.8.0.
[arguments]: Set Bash completion directory in #:make-flags.
 2016-11-01 21:46:06 -04:00
David Thompson 2c1d46b257
gnu: love: Update to 0.10.2. 
* gnu/packages/game-development.scm (love): Update to 0.10.2.
 2016-11-01 21:03:18 -04:00
Ludovic Courtès 4af2fafd97
doc: Fix typo. 
Fixes <http://bugs.gnu.org/24851>.
Reported by saffronsnail@hushmail.com.

* doc/guix.texi (Initial RAM Disk): Move parenthesis to after "of
QEMU".
 2016-11-01 22:23:49 +01:00
Ludovic Courtès 21f828e02e
gnu: emacs-debbugs: Update to 0.12. 
* gnu/packages/emacs.scm (emacs-debbugs): Update to 0.12.
 2016-11-01 22:23:48 +01:00
Leo Famulari 3325803b0b
gnu: bind: Update to 9.10.4-P4 [fixes CVE-2016-8864]. 
* gnu/packages/dns.scm (bind): Update to 9.10.4-P4.
 2016-11-01 17:03:12 -04:00
Leo Famulari e3e3e488a1
gnu: diffoscope: Update to 62. 
* gnu/packages/package-management.scm (diffoscope): Update to 62.
 2016-11-01 16:17:12 -04:00
Marius Bakke bac3d6095d
gnu: python-django: Update to 1.10.3 [fixes CVE-2016-{9013,9014}]. 
* gnu/packages/django.scm (python-django, python2-django): Update to 1.10.3.
[source]: Remove patch.
* gnu/packages/patches/python-django-fix-testcase.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-11-01 14:02:01 -04:00
Marius Bakke b56d9ce304
gnu: xapian: Update to 1.4.1. 
* gnu/packages/search.scm (xapian): Update to 1.4.1.
 2016-11-01 10:37:19 +00:00
Efraim Flashner 6846f08471
gnu: Correct hackage mirror usage. 
* gnu/package/haskell.scm (ghc-data-accessor)[source]: Specify hackage
mirror.
(ghc-data-accessor-transformers)[source]: Same.
(ghc-gnuplot)[source]: Same.
 2016-11-01 10:37:18 +02:00
Efraim Flashner 4c13aad0bc
guix: Update hackage mirror. 
* guix/download.scm (%mirrors)[hackage]: Don't use https.
 2016-11-01 10:28:24 +02:00
Marius Bakke b3df4d7e57
gnu: Add speech-dispatcher. 
* gnu/packages/speech.scm (speech-dispatcher): New variable.
 2016-11-01 00:05:22 +00:00
Marius Bakke b58691fa73
licenses: Export fdl1.2+. 
This is a follow-up to 59b2034787.

* guix/licenses.scm (define-module): Export fdl1.2+.
 2016-11-01 00:05:22 +00:00
Marius Bakke 0905048ab3
gnu: Add dotconf. 
* gnu/packages/textutils.scm (dotconf): New variable.
 2016-11-01 00:05:22 +00:00
Ricardo Wurmus 6e9d5d5fba
gnu: librecad: Update to 2.1.3. 
* gnu/packages/engineering.scm (librecad): Update to 2.1.3.
 2016-10-31 23:10:48 +01:00
Leo Famulari fdc45ab1b0
gnu: imagemagick: Update to 6.9.6-3. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-3.
 2016-10-31 13:31:32 -04:00
Federico Beffa 1a86b671ce
gnu: Add ghc-gnuplot. 
* gnu/packages/haskell.scm (ghc-gnuplot): New variable.
 2016-10-31 16:13:38 +01:00
Federico Beffa a5cbef03ba
gnu: Add ghc-utility-ht. 
* gnu/packages/haskell.scm (ghc-utility-ht): New variable.
 2016-10-31 16:13:35 +01:00
Federico Beffa 81a1191922
gnu: Add ghc-data-access-transformers. 
* gnu/packages/haskell.scm (ghc-data-access-transformers): New variable.
 2016-10-31 16:13:33 +01:00
Federico Beffa 505e0150dc
gnu: Add ghc-data-accessor. 
* gnu/packages/haskell.scm (ghc-data-accessor): New variable.
 2016-10-31 16:13:31 +01:00
Federico Beffa 442c2c99a5
download: Add Hackage mirrors. 
* guix/download.scm [%mirrors]: Add Hackage mirrors.
 2016-10-31 16:13:29 +01:00
Federico Beffa 6af886f492
gnu: geiser-next: Re-introduce it. 
* gnu/packages/emacs.scm (geiser-next): Re-introduce it.
 2016-10-31 16:13:27 +01:00
Federico Beffa 149c652378
gnu: Add chez-scmutils. 
* gnu/packages/chez.scm (chez-scmutils): New variable.
 2016-10-31 16:13:25 +01:00
Federico Beffa 53b9684e33
gnu: Add chez-mit. 
* gnu/packages/chez.scm (chez-mit): New variable.
 2016-10-31 16:13:23 +01:00
Federico Beffa 08fc0d68f0
gnu: haskell-mode: Update to 16.1. 
* gnu/packages/emacs.scm (haskell-mode): Update to 16.1.
  [inputs]: Add 'emacs-el-search' and 'emacs-stream'.
  [propagated-inputs]: Add 'emacs-dash'.
  [arguments]: Add modules. Adapt 'pre-build' and 'install' phases.
 2016-10-31 16:13:21 +01:00