19dd5097d9
gnu: certbot, python-acme: Update to 0.17.0.
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* gnu/packages/tls.scm (certbot, python-acme, python2-acme): Update to 0.17.0.
2017-08-04 02:32:53 +02:00
9a7fd375a2
gnu: xonsh: Update to 0.5.12.
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* gnu/packages/shells.scm (xonsh): Update to 0.5.12.
2017-08-04 02:06:39 +02:00
b55d15e795
gnu: cmark: Update to 0.28.0.
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* gnu/packages/markup.scm (cmark): Update to 0.28.0.
2017-08-04 01:51:23 +02:00
0a3ecfd29c
gnu: thefuck: Update to 3.19.
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* gnu/packages/admin.scm (thefuck): Update to 3.19.
2017-08-04 01:51:23 +02:00
30ac4cc7e6
gnu: zerofree: Update to 1.1.0.
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* gnu/packages/linux.scm (zerofree): Update to 1.1.0.
[home-page, source]: Update from old, inaccessible location.
2017-08-04 01:51:22 +02:00
4de4a1cfcc
gnu: zerofree: Expand description.
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* gnu/packages/linux.scm (zerofree)[description]: Expand.
2017-08-04 01:51:22 +02:00
7a068459ba
gnu: zerofree: Use ‘install-file’.
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* gnu/packages/linux.scm (zerofree)[arguments]: Simplify install phase,
using ‘install-file’.
2017-08-04 01:51:21 +02:00
0f08917df3
gnu: zerofree: Use ‘modify-phases’ syntax.
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* gnu/packages/linux.scm (zerofree)[arguments]: Use ‘modify-phases’.
2017-08-04 01:51:21 +02:00
20f8d1dd78
gnu: sshfs-fuse: Update to 2.10.
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* gnu/packages/linux.scm (sshfs-fuse): Update to 2.10.
2017-08-04 01:51:20 +02:00
c89091459f
gnu: freerdp: Update to 2.0.0-rc0 [security fixes].
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Fixes CVE-2017-{2834,2835,2836,2837,2838,2839}.
Reported by Leo Famulari in <https://bugs.gnu.org/27939 >.
* gnu/packages/rdesktop.scm (freerdp): Update to 2.0.0-rc0.
[source]: Use tarball release. Adjust file-name.
[arguments]: Remove #:phases.
2017-08-04 00:52:52 +02:00
c9f4f56b24
gnu: git: Enable tests.
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* gnu/packages/version-control.scm (git)[arguments]: Remove #:tests?. Add
'patch-tests' phase.
2017-08-04 00:52:13 +02:00
81ca29a6d6
gnu: gnupg@1.4: Update to 1.4.22 [fixes CVE-2017-7526].
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* gnu/packages/gnupg.scm (gnupg-1): Update to 1.4.22.
2017-08-03 18:06:19 -04:00
c8737b1e41
gnu: icedtea@3.5.0: Properly handle decoding error while substituting.
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* gnu/packages/java.scm (icedtea-8)[arguments] <patch-jni-libs>: Change
'encoding-error to 'decoding-error, which is what Guile 2.2 raises when
failing to decode an input file.
2017-08-03 22:46:14 +02:00
9e37e537a2
gnu: Add missing references to (gnu packages cran).
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This is a follow-up to commit a8cba9dd11
2017-08-03 22:15:57 +02:00
7cb6155088
gnu: bioinformatics.scm: Use (gnu packages cran) module.
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This is a follow up to a8cba9dd11
2017-08-03 21:39:12 +03:00
cf189709bc
vm: Use grub-hybrid's grub-mkrescue.
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* gnu/system/vm.scm (system-disk-image): Use grub-hybrid's grub-mkrescue.
* gnu/bootlader/grub.scm (grub-mkrescue-bootloader): New variable.
2017-08-03 18:13:03 +02:00
2267e4d3f6
gnu: r-purrr: Update to 0.2.3.
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* gnu/packages/statistics.scm (r-purrr): Update to 0.2.3.
[propagated-inputs]: Remove r-rcpp and r-lazyeval; add r-rlang.
2017-08-03 17:53:55 +02:00
ceb802a31c
gnu: r-desc: Update to 1.1.1.
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* gnu/packages/statistics.scm (r-desc): Update to 1.1.1.
2017-08-03 17:53:55 +02:00
5e0de29892
gnu: r-seqminer: Update to 6.0.
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* gnu/packages/bioinformatics.scm (r-seqminer): Update to 6.0.
2017-08-03 17:53:54 +02:00
4e0c847d59
gnu: r-wgcna: Update to 1.60.
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* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.60.
2017-08-03 17:53:54 +02:00
c8a9b2bcbf
gnu: r-qtl: Update to 1.41-6.
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* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.41-6.
2017-08-03 17:53:54 +02:00
023aa8ff58
gnu: r-seqinr: Update to 3.4-5.
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* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.4-5.
2017-08-03 17:53:54 +02:00
7150f1c30c
gnu: r-optparse: Update to 1.4.4.
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* gnu/packages/bioinformatics.scm (r-optparse): Update to 1.4.4.
2017-08-03 17:53:53 +02:00
3f6ec083ec
gnu: r-bookdown: Update to 0.4.
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* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.4.
2017-08-03 17:53:53 +02:00
85cd755417
gnu: r-tclust: Update to 1.2-7.
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* gnu/packages/statistics.scm (r-tclust): Update to 1.2-7.
2017-08-03 17:53:53 +02:00
6bb4bfa4bc
gnu: r-car: Update to 2.1-5.
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* gnu/packages/statistics.scm (r-car): Update to 2.1-5.
2017-08-03 17:53:53 +02:00
0f008abe7a
gnu: r-rcppeigen: Update to 0.3.3.3.0.
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* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.0.
2017-08-03 17:53:53 +02:00
12c3bbb662
gnu: r-pbapply: Update to 1.3-3.
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* gnu/packages/statistics.scm (r-pbapply): Update to 1.3-3.
2017-08-03 17:53:52 +02:00
4431dd3a4e
gnu: r-vgam: Update to 1.0-4.
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* gnu/packages/statistics.scm (r-vgam): Update to 1.0-4.
2017-08-03 17:53:52 +02:00
41692b2963
gnu: r-mclust: Update to 5.3.
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* gnu/packages/statistics.scm (r-mclust): Update to 5.3.
2017-08-03 17:53:52 +02:00
60869fb2f8
gnu: r-flexmix: Update to 2.3-14.
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* gnu/packages/statistics.scm (r-flexmix): Update to 2.3-14.
2017-08-03 17:53:52 +02:00
62d3afc3d6
gnu: r-fastica: Update to 1.2-1.
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* gnu/packages/statistics.scm (r-fastica): Update to 1.2-1.
2017-08-03 17:53:52 +02:00
df03b6f90c
gnu: r-cowplot: Update to 0.8.0.
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* gnu/packages/statistics.scm (r-cowplot): Update to 0.8.0.
2017-08-03 17:53:51 +02:00
d58faa7f44
gnu: r-rann: Update to 2.5.1.
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* gnu/packages/statistics.scm (r-rann): Update to 2.5.1.
2017-08-03 17:53:51 +02:00
a8c2706de2
gnu: r-statmod: Update to 1.4.30.
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* gnu/packages/statistics.scm (r-statmod): Update to 1.4.30.
2017-08-03 17:53:51 +02:00
80d1185076
gnu: r-gdata: Update to 2.18.0.
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* gnu/packages/statistics.scm (r-gdata): Update to 2.18.0.
2017-08-03 17:53:51 +02:00
2c75199c56
gnu: r-sfsmisc: Update to 1.1-1.
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* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-1.
2017-08-03 17:53:51 +02:00
1d256438c8
gnu: r-googlesheets: Update to 0.2.2.
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* gnu/packages/statistics.scm (r-googlesheets): Update to 0.2.2.
2017-08-03 17:53:50 +02:00
9b9fef0eaf
gnu: r-tidyr: Update to 0.6.3.
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* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.3.
2017-08-03 17:53:50 +02:00
e1cd25bc78
gnu: r-glmnet: Update to 2.0-10.
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* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-10.
2017-08-03 17:53:50 +02:00
1c576cbadb
gnu: r-irlba: Update to 2.2.1.
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* gnu/packages/statistics.scm (r-irlba): Update to 2.2.1.
2017-08-03 17:53:50 +02:00
81c057ced9
gnu: r-sparsem: Update to 1.77.
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* gnu/packages/statistics.scm (r-sparsem): Update to 1.77.
2017-08-03 17:53:50 +02:00
127b926bc1
gnu: r-segmented: Update to 0.5-2.1.
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* gnu/packages/statistics.scm (r-segmented): Update to 0.5-2.1.
2017-08-03 17:53:49 +02:00
fe9917284f
gnu: r-xml: Update to 3.98-1.9.
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* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.9.
2017-08-03 17:53:49 +02:00
cc8ba9b69c
gnu: r-rmarkdown: Update to 1.6.
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* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.6.
2017-08-03 17:53:49 +02:00
7c172eacfa
gnu: r-rcpparmadillo: Update to 0.7.900.2.0.
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* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.900.2.0.
2017-08-03 17:53:49 +02:00
1c41d51743
gnu: r-plotrix: Update to 3.6-5.
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* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-5.
2017-08-03 17:53:49 +02:00
76040b8561
gnu: r-readr: Update to 1.1.1.
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* gnu/packages/statistics.scm (r-readr): Update to 1.1.1.
2017-08-03 17:53:48 +02:00
d8048a1212
gnu: r-withr: Update to 2.0.0.
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* gnu/packages/statistics.scm (r-withr): Update to 2.0.0.
2017-08-03 17:53:48 +02:00
f212bf84ab
gnu: r-git2r: Update to 0.19.0.
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* gnu/packages/statistics.scm (r-git2r): Update to 0.19.0.
2017-08-03 17:53:48 +02:00
Tobias Geerinckx-Rice