11ed4108fb
gnu: methylkit: Use new home page.
...
* gnu/packages/bioinformatics.scm (methylkit)[home-page]: Update.
2017-11-11 05:17:58 +01:00
7c087150ec
gnu: vsearch: Update to 2.6.0.
...
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.6.0.
2017-11-11 09:33:16 +10:00
59da6f04f4
download: Work around bogus HTTP handling in Guile 2.2 <= 2.2.2.
...
Reported by Konrad Hinsen <konrad.hinsen@fastmail.net>
at <https://lists.gnu.org/archive/html/guix-devel/2017-11/msg00070.html >.
* guix/build/download.scm (write-request-line) [guile-2.2]: New
procedure.
2017-11-10 23:11:52 +01:00
74c0aeb027
gnu: webkitgtk: Update to 2.18.3 [fixes CVE-2017-{13788,13798,13803}].
...
* gnu/packages/webkit.scm (webkitgtk): Update to 2.18.3.
2017-11-10 12:48:15 -05:00
adf7e69cab
gnu: qemu: Fix CVE-2017-{15038,15268,15289}.
...
* gnu/packages/patches/qemu-CVE-2017-15038.patch,
gnu/packages/patches/qemu-CVE-2017-15268.patch,
gnu/packages/patches/qemu-CVE-2017-15289.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.
2017-11-10 12:16:31 -05:00
d4d7d70912
gnu: Fix hunspell-dict-en-* dictionary installation.
...
* gnu/packages/aspell.scm (aspell-word-list)[arguments]: Install the .dic file
for all hunspell dictionaries.
2017-11-10 11:59:09 -05:00
0af4df7e61
gnu: cutadapt: Update to 1.14.
...
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.14.
2017-11-10 15:32:42 +01:00
ae451b9dc2
gnu: synergy: Fix minor problems with the package definitions.
...
* gnu/packages/synergy.scm (synergy)[source]: Return #t in the snippet.
[arguments]: Let build phases return #t; fix typo in comment.
[home-page]: Change to redirection target.
[description]: Fix typo.
2017-11-10 15:19:06 +01:00
177475cfb5
gnu: password-store: Install passmenu script.
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* gnu/packages/password-utils (password-store)
[inputs]: Add dmenu and xdotool.
[arguments]<#:phases>['patch-passmenu-path']: New phase.
[arguments]<#:phases>['install-passmenu']: New phase.
2017-11-10 14:22:28 +01:00
011f57695a
gnu: Add Epson escpr printer driver.
...
* gnu/packages/cups.scm (escpr): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-10 13:07:54 +01:00
195f0d05c3
git: Work around wrong default argument of 'clone'.
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Fixes <https://bugs.gnu.org/29238 >.
Reported by Benjamin Andresen <benny@in-ulm.de>.
* guix/git.scm (clone*): Pass second argument to 'clone'.
2017-11-10 13:07:54 +01:00
179b7ac66d
gnu: postgresql@9.6: Update to 9.6.6 [security fixes].
...
This fixes CVE-2017-12172, CVE-2017-15098, CVE-2017-15099.
* gnu/packages/databases.scm (postgresql@9.6): Update to 9.6.6.
2017-11-10 10:24:13 +02:00
74bea6a036
gnu: linux-libre: Update to 4.13.12.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.12.
(%linux-libre-hash): Update hash.
2017-11-09 21:11:00 -05:00
4cacbf33a6
gnu: linux-libre@4.9: Update to 4.9.61.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.61.
2017-11-09 21:10:14 -05:00
3a79bd03ff
gnu: linux-libre@4.4: Update to 4.4.97.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.97.
2017-11-09 21:09:34 -05:00
f8071bea91
gnu: linux-libre@4.1: Update to 4.1.46.
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* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.46.
2017-11-09 21:08:51 -05:00
3c3d20c8f3
gnu: libpsl: Update to 0.19.1.
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* gnu/packages/web.scm (libpsl): Update to 0.19.1.
2017-11-10 02:37:15 +01:00
1d8e73ba67
gnu: postgresql: Update to 10.1 [security fixes].
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Fixes CVE-2017-12172, CVE-2017-15098 and CVE-2017-15099.
* gnu/packages/databases.scm (postgresql): Update to 10.1.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-11-10 01:22:53 +01:00
b70d72ac47
tests: Adjust to unbound-variable exception printer.
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* tests/guix-system.sh: Adjust unbound-variable test for commit
dc856223f5
2017-11-10 00:02:30 +01:00
e99f045cc8
gnu: Add r-directlabels.
...
* gnu/packages/statistics.scm (r-directlabels): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-09 23:54:48 +01:00
d3150731a8
gnu: emacs-ahungry-theme: Update to 1.8.0.
...
* gnu/packages/emacs.scm (emacs-ahungry-theme): Update to 1.8.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-09 23:54:48 +01:00
f021382be4
gnu: Add nxbelld.
...
* gnu/packages/xdisorg.scm (nxbelld): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-09 23:54:48 +01:00
dc856223f5
ui: Add an 'unbound-variable' exception printer.
...
* guix/ui.scm (print-unbound-variable-error): New variable.
Use it as the 'unbound-variable' printer.
2017-11-09 23:54:47 +01:00
a2985bb101
ui: Provide hints for unbound-variable errors.
...
* guix/ui.scm (known-variable-definition): New procedure.
(report-load-error): Handle 'unbound-variable'.
2017-11-09 23:54:47 +01:00
935542fbde
ui: Add 'display-hint'.
...
* guix/ui.scm (known-variable-definition): New procedure.
(report-load-error): Use it.
2017-11-09 23:54:47 +01:00
d8f075c3a3
gnu: %intel-compatible-systems: Re-add variable.
...
This is a follow-up to cfbe7b7f4c
2017-11-09 22:25:48 +02:00
cfbe7b7f4c
gnu: linux: Add linux-libre arm kernel.
...
* Makefile.am (AUX_FILES): Add arm config file.
* gnu/packages/aux-files/linux-libre/4.13-arm.conf: New file.
* gnu/packages/linux.scm (%intel-compatible-systems): Rename to
%linux-compatible-systems and add "armhf-linux".
(linux-libre): Adapt consequently.
The config file for arm is taken from debian armmp kernel. It's a generic
firmware for ARMv7 multiplatform compatible SoCs.
2017-11-09 20:35:11 +01:00
3694a9b33b
gnu: chromaprint: Update to 1.4.2.
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* gnu/packages/mp3.scm (chromaprint): Update to 1.4.2.
2017-11-09 13:23:39 -05:00
ad9b8987f3
gnu: libwnck: Update to 3.24.1.
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* gnu/packages/gnome.scm (libwnck): Update to 3.24.1.
2017-11-09 12:17:37 -05:00
5475749960
system: Do not set 'TZ'.
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Fixes <https://bugs.gnu.org/29212 >.
Reported by Diego Nicola Barbato <dnbarbato@posteo.de>.
* gnu/system.scm (operating-system-environment-variables): Remove "TZ".
2017-11-09 09:59:21 +01:00
da4a707c88
gnu: roary: Update to 3.11.0.
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* gnu/packages/bioinformatics.scm (roary): Update to 3.11.0.
[inputs]: Add perl-digest-md5-file.
2017-11-09 18:12:32 +10:00
e5f748a6c0
gnu: totem: Enable parallel build.
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* gnu/packages/gnome.scm (totem)[arguments]: Set #:parallel-build? to #t
implicitly.
2017-11-08 20:43:40 -05:00
8f220b7b41
gnu: tremc: Update to 0.9.0-1.9755b50.
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* gnu/packages/bittorrent.scm (tremc): Update to 0.9.0-1.9755b50.
[version]: Use git-version.
[source]: Use git-file-name.
2017-11-08 19:32:32 -05:00
ea1f073d73
gnu: slurm: Update to 16.05.11 [fixes CVE-2017-15566].
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* gnu/packages/parallel.scm (slurm): Update to 16.05.11.
[source]: Use the recommended download URL.
2017-11-08 19:32:31 -05:00
a3dd13ae0e
gnu: rpm: Update to 4.13.0.2 [fixes CVE-2017-{7500,7501}].
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* gnu/packages/package-management.scm (rpm): Update to 4.13.0.2.
2017-11-08 19:00:07 -05:00
7df4194b16
gnu: python-icalendar: Update to 4.0.0.
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* gnu/packages/python.scm (python-icalendar): Update to 4.0.0.
2017-11-08 18:36:29 -05:00
03b154f800
gnu: syncthing: Update to 0.14.40.
...
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.40.
[inputs]: Add go-github-com-zillode-notify.
2017-11-08 17:24:02 -05:00
52ff28e4aa
gnu: Add go-github-com-zillode-notify.
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* gnu/packages/syncthing.scm (go-github-com-zillode-notify): New variable.
2017-11-08 17:24:01 -05:00
4cf6827de3
gnu: go-github-com-audriusbutkevicius-kcp-go: Update to 0.0.0-1.8ae5f52.
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* gnu/packages/syncthing.scm (go-github-com-audriusbutkevicius-kcp-go):
Update to 0.0.0-1.8ae5f52.
[propagated-inputs]: Add go-github-com-tjfoc-gmsm-sm4.
2017-11-08 17:24:01 -05:00
f44169c2a7
gnu: Add go-github-com-tjfoc-gmsm-sm4.
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* gnu/packages/syncthing.scm (go-github-com-tjfoc-gmsm-sm4): New variable.
2017-11-08 17:24:01 -05:00
c5a4a92f1a
gnu: Improve error reporting of the use-.*modules macros.
...
Suggested by Julien Lepiller and myglc2
at <https://lists.gnu.org/archive/html/guix-devel/2017-11/msg00106.html >.
* gnu.scm (%try-use-modules): New procedure.
(package-module-hint, service-module-hint): New procedures.
(try-use-modules): New macro.
(use-package-modules, use-service-modules, use-system-modules): Use it.
* tests/guix-system.sh: Test it.
2017-11-08 22:36:20 +01:00
49483f7138
services: Add 'lookup-service-types'.
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* gnu/services.scm (lookup-service-types): New procedure.
* tests/services.scm ("lookup-service-types"): New test.
2017-11-08 22:31:58 +01:00
3943913fac
services: 'fold-service-types' includes (gnu services).
...
* gnu/services.scm (all-service-modules): New procedure.
(fold-service-types): Use it for the default MODULES value.
2017-11-08 22:31:58 +01:00
a3d37f3ae5
services: 'fold-service-types' honors its seed.
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* gnu/services.scm (fold-service-types): Use SEED instead of '().
2017-11-08 22:31:58 +01:00
23735137eb
ui: Define and honor '&error-location' and '&fix-hint' conditions.
...
* guix/utils.scm (&error-location, &fix-hint): New condition types.
* guix/ui.scm (report-load-error): Handle them.
(call-with-error-handling): Honor '&error-location'.
2017-11-08 22:31:58 +01:00
37eed374d9
ui: Introduce (guix i18n).
...
* guix/ui.scm (G_, N_, _P, %gettext-domain, %package-text-domain): Move
to...
* guix/i18n.scm: ... here. New file.
2017-11-08 22:31:58 +01:00
0af94ad52f
gnu: service: Update comment.
...
* gnu/services/base.scm (guix-activation): Update comment.
2017-11-08 18:23:06 +01:00
d9565f7d87
install: Use overlayfs instead of unionfs.
...
I dediced to keep adding /tmp as tmpfs since I was not able to trigger bug
while still using unionfs, so I could not verify whether this mount is still
needed with overlayfs. Mapping /tmp to tmpfs does not harm, so we are on the
save side.
* gnu/system/install.scm (make-cow-store): Mount /gnu/store without additional
read-only bind-mount, since in overlayfs the "lower" level is always
read-only. Add work-dir required by overlayfs. No need to sleep anymore
since now using the mount syscall. [unionfs]: Remove now unused function.
(%installation-services): Update comment.
(installation-os)[file-systems]: Update comment.
2017-11-08 18:23:06 +01:00
c828969036
build: Use overlayfs instead of unionfs.
...
Overlayfs is part of the kernel, while unionfs needs FUSE. This also reduces
the size of the initrd by ca. 4.3% (487K).
* gnu/build/linux-boot.scm (mount-root-file-system): Remove optional parameter
"unionfs"; mount using overlayfs instead of unionfs; new directory layout
requied by overlayfs; update documentation.
[mark-as-not-killable]: Remove now unused function
* gnu/system/linux-initrd.scm (file-system-packages): Remove now unused
packages "unionfs-fuse/static" and thus unused related 'if'.
(linux-modules): Replace "fuse" by "overlay".
2017-11-08 18:23:05 +01:00
34260a10d7
gnu: miso: Use pypi-uri.
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* gnu/packages/bioinformatics.scm (miso)[source]: Use pypi-uri.
2017-11-08 17:41:08 +01:00
Tobias Geerinckx-Rice