Ricardo Wurmus
accd5f996e
gnu: python-ipython: Update to 4.0.0.
...
* gnu/packages/python.scm (python-ipython): Update to 4.0.0.
[inputs]: Keep only "readline" and "which"; move the remaining inputs
to propagated-inputs, except for "python-requests" and "python-nose"
which are moved to native-inputs.
[propagated-inputs]: Add "python-pexpect", "python-pickleshare",
"python-simplegeneric", "python-traitlets", "python-ipykernel".
[native-inputs]: Add "python-testpath".
[arguments]: Enable building of HTML documentation.
[source]: Remove patch.
* gnu/packages/patches/python-ipython-inputhook-ctype.patch: Remove
patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-04 21:23:07 +01:00
Ricardo Wurmus
8ceebf8fa6
gnu: Add python-jupyter-console.
...
* gnu/packages/python.scm (python-jupyter-console,
python2-jupyter-console): New variable.
2016-11-04 21:23:07 +01:00
Ricardo Wurmus
4fe2e34409
gnu: Add python-ipywidgets.
...
* gnu/packages/python.scm (python-ipywidgets, python2-ipywidgets): New
variables.
2016-11-04 21:23:06 +01:00
Ricardo Wurmus
d55724ed5b
gnu: Add python-widgetsnbextension.
...
* gnu/packages/python.scm (python-widgetsnbextension,
python2-widgetsnbextension): New variables.
2016-11-04 21:23:06 +01:00
Ricardo Wurmus
a0d62280f5
gnu: Add python-notebook.
...
* gnu/packages/python.scm (python-notebook, python2-notebook): New
variables.
2016-11-04 21:23:05 +01:00
Ricardo Wurmus
c60898a845
gnu: Add python-nbconvert.
...
* gnu/packages/python.scm (python-nbconvert, python2-nbconvert): New
variables.
2016-11-04 21:23:05 +01:00
Ricardo Wurmus
60590a3ae8
gnu: Add python-entrypoints.
...
* gnu/packages/python.scm (python-entrypoints, python2-entrypoints): New
variables.
2016-11-04 21:23:04 +01:00
Kei Kebreau
08722837b0
gnu: chromium-bsu: Update to 0.9.16.1.
...
* gnu/packages/games.scm (chromium-bsu): Update to 0.9.16.1.
[arguments]: Remove 'set-sdl-paths phase.
[inputs]: Add gnu-gettext.
2016-11-04 11:17:09 -04:00
Ludovic Courtès
bd2e1a8cb0
gnu: cross-base: Remove exports of cross compilers.
...
They were never really needed and caused troubles in the presence of
circular module dependencies as reported by
Danny Milosavljevic <dannym@scratchpost.org> at
<https://lists.gnu.org/archive/html/guix-devel/2016-11/msg00144.html >.
* gnu/packages/cross-base.scm (xgcc-mips64el, xgcc-xtensa, xgcc-armhf):
Remove.
* gnu/packages/firmware.scm (ath9k-htc-firmware)[native-inputs]: Use
'cross-gcc' instead of XGCC-XTENSA.
2016-11-04 15:36:00 +01:00
Ludovic Courtès
fb77c61422
gnu: Remove '%final-inputs' references at the top level.
...
Due to circular dependencies, referring to bindings exported by other
modules from the top level is frowned upon. This patch addresses one of
the remaining cases.
* gnu/packages/base.scm (%final-inputs): New procedure.
* gnu/packages/cross-base.scm: Remove (gnu packages commencement) import.
(cross-gcc): Use the new '%final-inputs'.
* gnu/packages/make-bootstrap.scm: Remove (gnu packages commencement) import.
(package-with-relocatable-glibc): Use the new '%final-inputs'.
2016-11-04 15:36:00 +01:00
Roel Janssen
8af47ef603
gnu: r-nmf: Use bigmemory.
...
* gnu/packages/statistics.scm (r-nmf)[propagated-inputs]: Add
r-bigmemory and r-synchronicity.
2016-11-04 14:53:24 +01:00
Roel Janssen
59523c4cf5
gnu: Add r-bigmemory.
...
* gnu/packages/statistics.scm (r-bigmemory): New variable.
2016-11-04 14:46:47 +01:00
Roel Janssen
4a83865286
gnu: Add r-synchronicity.
...
* gnu/packages/statistics.scm (r-synchronicity): New variable.
2016-11-04 14:40:13 +01:00
Roel Janssen
c6105d69c0
gnu: Add r-bigmemory-sri.
...
gnu/packages/statistics.scm (r-bigmemory-sri): New variable.
2016-11-04 14:35:04 +01:00
宋文武
1a79d4767a
gnu: xmp: Update to 4.1.0.
...
* gnu/packages/audio.scm (xmp): Update to 4.1.0.
2016-11-04 21:08:44 +08:00
宋文武
2784fca032
gnu: libxmp: Update to 4.4.1.
...
* gnu/packages/audio.scm (libxmp): Update to 4.4.1.
2016-11-04 21:08:44 +08:00
Florian Paul Schmidt
18f3d92b39
gnu: Add swh-plugins-lv2.
...
* gnu/packages/audio.scm (swh-plugins-lv2): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2016-11-04 12:11:06 +01:00
Ricardo Wurmus
55436048d8
gnu: Add python-bleach.
...
* gnu/packages/python.scm (python-bleach, python2-bleach): New
variables.
2016-11-04 11:32:35 +01:00
Ricardo Wurmus
2d321bb2c5
gnu: Add python-nbformat.
...
* gnu/packages/python.scm (python-nbformat, python2-nbformat): New
variables.
2016-11-04 11:29:16 +01:00
Ricardo Wurmus
8ee62c97f6
gnu: Add python-html5lib-0.9.
...
* gnu/packages/python.scm (python-html5lib-0.9, python2-html5lib-0.9):
New variables.
2016-11-04 11:26:34 +01:00
Ricardo Wurmus
5ff6effcc0
gnu: Add python-testpath.
...
* gnu/packages/python.scm (python-testpath, python2-testpath): New
variables.
2016-11-04 11:24:02 +01:00
Ricardo Wurmus
ab526102ed
gnu: Add python-ipykernel.
...
* gnu/packages/python.scm (python-ipykernel, python2-ipykernel): New
variables.
2016-11-04 11:23:19 +01:00
Ricardo Wurmus
9ff01f2d01
gnu: Add python-jupyter-client.
...
* gnu/packages/python.scm (python-jupyter-client,
python2-jupyter-client): New variables.
2016-11-04 11:22:54 +01:00
Ricardo Wurmus
4263b06fa2
gnu: Add python-jupyter-core.
...
* gnu/packages/python.scm (python-jupyter-core, python2-jupyter-core):
New variables.
2016-11-04 11:21:37 +01:00
Ricardo Wurmus
a5ba14811a
gnu: python-traitlets: Update to 4.2.0.
...
* gnu/packages/python.scm (python-traitlets): Update to 4.2.0.
2016-11-04 11:19:22 +01:00
Leo Famulari
8d806cb0e0
gnu: ola: Fix build failure caused by use of deprecated function.
...
* gnu/packages/patches/ola-readdir-r.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/lighting.scm (ola)[source]: Use it.
2016-11-04 01:44:42 -04:00
Marius Bakke
6e1d7aa94e
gnu: Add font-adobe-source-code-pro.
...
* gnu/packages/fonts.scm (font-adobe-source-code-pro): New variable.
2016-11-03 20:32:04 +00:00
Marius Bakke
b4edcd28cf
gnu: Add geteltorito.
...
* gnu/packages/cdrom.scm (geteltorito): New variable.
2016-11-03 20:31:36 +00:00
Kei Kebreau
ccbc575824
gnu: maxima: Update to 5.38.1.
...
* gnu/packages/maths.scm (maxima): Update to 5.38.1.
2016-11-03 16:14:05 -04:00
Kei Kebreau
043f1535c2
gnu: starfighter: Update to 1.6.
...
* gnu/packages/games.scm (starfighter): Update to 1.6.
2016-11-03 15:40:17 -04:00
Ricardo Wurmus
ed8fbe5e62
gnu: r-rcas: Update to 1.0.0.
...
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.0.0.
2016-11-03 19:01:46 +01:00
Ricardo Wurmus
16a8bd3194
gnu: r-rtracklayer: Update to 1.34.1.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.34.1.
2016-11-03 19:01:46 +01:00
Ricardo Wurmus
c15ae9b008
gnu: r-biocparallel: Update to 1.8.1.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.8.1.
2016-11-03 19:01:46 +01:00
Ricardo Wurmus
5b3b2d2f02
gnu: r-limma: Update to 3.30.2.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.2.
2016-11-03 19:01:46 +01:00
Ricardo Wurmus
ed3054231d
gnu: r-edger: Update to 3.16.1.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.1.
2016-11-03 19:01:45 +01:00
Ricardo Wurmus
e71659162b
gnu: r-hmisc: Update to 4.0.0.
...
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0.0.
[propagated-inputs]: Add r-htmltable, r-htmltools, r-viridis,
r-survival.
2016-11-03 19:01:45 +01:00
Ricardo Wurmus
f158b92caf
gnu: r-r-oo: Update to 1.21.0.
...
* gnu/packages/statistics.scm (r-r-oo): Update to 1.21.0.
2016-11-03 19:01:45 +01:00
Ricardo Wurmus
f890981690
gnu: r-openssl: Update to 0.9.5.
...
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.5.
2016-11-03 19:01:45 +01:00
Ricardo Wurmus
fbe5161c7d
gnu: r-checkmate: Update to 1.8.2.
...
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.2.
2016-11-03 19:01:45 +01:00
Ricardo Wurmus
572e1a0ca7
gnu: r-acepack: Update to 1.4.1.
...
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.1.
2016-11-03 19:01:44 +01:00
Ricardo Wurmus
054a9a786b
gnu: r-gdtools: Update to 0.1.1.
...
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.1.
[propagated-inputs]: Add r-withr.
2016-11-03 19:01:44 +01:00
Ricardo Wurmus
d13a4e2575
gnu: r-proto: Update to 1.0.0.
...
* gnu/packages/statistics.scm (r-proto): Update to 1.0.0.
2016-11-03 19:01:44 +01:00
Ricardo Wurmus
ebbd4d0bfd
gnu: Add r-survival.
...
* gnu/packages/statistics.scm (r-survival): New variable.
2016-11-03 19:01:44 +01:00
Ricardo Wurmus
ac3265abad
gnu: Add r-htmltable.
...
* gnu/packages/web.scm (r-htmltable): New variable.
2016-11-03 19:01:44 +01:00
Kei Kebreau
b81245ccb3
[PATCH] gnu: Add libjxr.
...
* gnu/packages/image.scm (libjxr): New variable.
* gnu/packages/patches/libjxr-fix-function-signature.patch: New file.
* gnu/packages/patches/libjxr-fix-typos.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patches.
2016-11-03 13:43:23 -04:00
Danny Milosavljevic
b054b26a48
gnu: sunxi-tools: Update to 1.4.1.
...
* gnu/packages/admin.scm (sunxi-tools): Update to 1.4.1.
[arguments]: Add "CC=gcc" "all" to #:make-flags. Remove 'fix-Makefile'
phase. Add 'install' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-03 15:58:04 +01:00
Arun Isaac
5d68e9d620
gnu: Add pdf2svg.
...
* gnu/packages/pdf.scm (pdf2svg): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-03 14:33:50 +01:00
Ludovic Courtès
4c93fe83e8
gnu: mesa: Apply MIPS patch conditionally.
...
Fixes <http://bugs.gnu.org/24833 >.
Reported by Mark H Weaver <mhw@netris.org>.
* gnu/packages/gl.scm (mesa)[source](patches): Remove.
[native-inputs]: Add conditional "mips-patch" input.
[arguments]: Add conditional 'apply-mips-patch' phase.
2016-11-03 11:24:39 +01:00
ng0
05e3865e07
gnu: gnurl: Update to 7.51.0 [fixes CVE-2016-{8615..8625}].
...
* gnu/packages/gnunet.scm (gnurl): Update to 7.51.0.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-02 23:16:11 -04:00
Leo Famulari
b3cc0dce08
Merge branch 'master' into core-updates
2016-11-02 20:03:35 -04:00
Alex Sassmannshausen
e681e347c4
gnu: Add perl-getopt-long.
...
* gnu/packages/perl.scm (perl-getopt-long): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-02 14:23:24 +00:00
Marius Bakke
cbf5889fe5
gnu: curl: Update replacement to 7.51.0 [fixes CVE-2016-{8615..8625}].
...
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.51.0.
(curl-7.50.3): Replace with ...
(curl-7.51.0): ... this.
2016-11-02 12:01:37 +00:00
Mark H Weaver
ac1dc6d12f
gnu: linux-libre: Update to 4.8.6.
...
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.6.
2016-11-02 07:31:53 -04:00
Mark H Weaver
b3097a71c5
gnu: linux-libre@4.4: Update to 4.4.30.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.30.
2016-11-02 07:29:28 -04:00
Ricardo Wurmus
d439aa36ce
gnu: perl-test-simple: Update to 1.302062.
...
* gnu/packages/perl.scm (perl-test-simple): Update to 1.302062.
2016-11-02 11:51:46 +01:00
Marius Bakke
24dfc13bfa
gnu: re2: Update to 2016-11-01.
...
* gnu/packages/regex.scm (re2): Update to 2016-11-01.
2016-11-02 05:34:09 +00:00
Leo Famulari
86c61a6bd1
gnu: isc-dhcp: Update to 4.3.5 [fixes CVE-2016-8864].
...
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.5. Update bundled
'bind' to 9.9.9-P4.
2016-11-01 21:46:09 -04:00
Leo Famulari
e777d07db9
gnu: iproute2: Update to 4.8.0.
...
* gnu/packages/linux.scm (iproute2): Update to 4.8.0.
[arguments]: Set Bash completion directory in #:make-flags.
2016-11-01 21:46:06 -04:00
David Thompson
2c1d46b257
gnu: love: Update to 0.10.2.
...
* gnu/packages/game-development.scm (love): Update to 0.10.2.
2016-11-01 21:03:18 -04:00
Ludovic Courtès
21f828e02e
gnu: emacs-debbugs: Update to 0.12.
...
* gnu/packages/emacs.scm (emacs-debbugs): Update to 0.12.
2016-11-01 22:23:48 +01:00
Leo Famulari
3325803b0b
gnu: bind: Update to 9.10.4-P4 [fixes CVE-2016-8864].
...
* gnu/packages/dns.scm (bind): Update to 9.10.4-P4.
2016-11-01 17:03:12 -04:00
Leo Famulari
e3e3e488a1
gnu: diffoscope: Update to 62.
...
* gnu/packages/package-management.scm (diffoscope): Update to 62.
2016-11-01 16:17:12 -04:00
Marius Bakke
bac3d6095d
gnu: python-django: Update to 1.10.3 [fixes CVE-2016-{9013,9014}].
...
* gnu/packages/django.scm (python-django, python2-django): Update to 1.10.3.
[source]: Remove patch.
* gnu/packages/patches/python-django-fix-testcase.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-01 14:02:01 -04:00
Marius Bakke
b56d9ce304
gnu: xapian: Update to 1.4.1.
...
* gnu/packages/search.scm (xapian): Update to 1.4.1.
2016-11-01 10:37:19 +00:00
Efraim Flashner
6846f08471
gnu: Correct hackage mirror usage.
...
* gnu/package/haskell.scm (ghc-data-accessor)[source]: Specify hackage
mirror.
(ghc-data-accessor-transformers)[source]: Same.
(ghc-gnuplot)[source]: Same.
2016-11-01 10:37:18 +02:00
Leo Famulari
40330e555f
gnu: icecat: Fix build with binutils >= 2.26.
...
* gnu/packages/patches/icecat-binutils.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Use it.
2016-10-31 20:59:40 -04:00
Marius Bakke
b3df4d7e57
gnu: Add speech-dispatcher.
...
* gnu/packages/speech.scm (speech-dispatcher): New variable.
2016-11-01 00:05:22 +00:00
Marius Bakke
0905048ab3
gnu: Add dotconf.
...
* gnu/packages/textutils.scm (dotconf): New variable.
2016-11-01 00:05:22 +00:00
Ricardo Wurmus
6e9d5d5fba
gnu: librecad: Update to 2.1.3.
...
* gnu/packages/engineering.scm (librecad): Update to 2.1.3.
2016-10-31 23:10:48 +01:00
Tobias Geerinckx-Rice
e6efcd5837
gnu: virt-manager: Fix build by including 'gtk-update-icon-cache'.
...
* gnu/packages/qemu.scm (virt-manager)[native-inputs]: Add gtk+:bin.
2016-10-31 22:44:30 +01:00
Tobias Geerinckx-Rice
88dfd8b8aa
gnu: cups-minimal: Update to 2.2.1.
...
* gnu/packages/cups.scm (cups-minimal): Update to 2.2.1.
[source]: Use new https://github.com download URL.
2016-10-31 22:33:51 +01:00
Leo Famulari
65a3bdf7eb
gnu: borg: Run the tests with python-pytest-2.9.2.
...
* gnu/packages/backup.scm (borg)[native-inputs]: Use python-pytest-2.9.2.
2016-10-31 17:02:38 -04:00
Leo Famulari
0bc6ef2a87
gnu: Add python-pytest-2.9.2.
...
* gnu/packages/python.scm (python-pytest-2.9.2): New variable.
2016-10-31 17:02:34 -04:00
Manolis Ragkousis
d76181a7a3
gnu: cross-libc: Use the correct libc.
...
* gnu/packages/cross-base.scm (cross-libc): Use cross-libc-for-target
to determine the correct libc to use.
2016-10-31 19:42:26 +02:00
Leo Famulari
fdc45ab1b0
gnu: imagemagick: Update to 6.9.6-3.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-3.
2016-10-31 13:31:32 -04:00
Federico Beffa
1a86b671ce
gnu: Add ghc-gnuplot.
...
* gnu/packages/haskell.scm (ghc-gnuplot): New variable.
2016-10-31 16:13:38 +01:00
Federico Beffa
a5cbef03ba
gnu: Add ghc-utility-ht.
...
* gnu/packages/haskell.scm (ghc-utility-ht): New variable.
2016-10-31 16:13:35 +01:00
Federico Beffa
81a1191922
gnu: Add ghc-data-access-transformers.
...
* gnu/packages/haskell.scm (ghc-data-access-transformers): New variable.
2016-10-31 16:13:33 +01:00
Federico Beffa
505e0150dc
gnu: Add ghc-data-accessor.
...
* gnu/packages/haskell.scm (ghc-data-accessor): New variable.
2016-10-31 16:13:31 +01:00
Federico Beffa
6af886f492
gnu: geiser-next: Re-introduce it.
...
* gnu/packages/emacs.scm (geiser-next): Re-introduce it.
2016-10-31 16:13:27 +01:00
Federico Beffa
149c652378
gnu: Add chez-scmutils.
...
* gnu/packages/chez.scm (chez-scmutils): New variable.
2016-10-31 16:13:25 +01:00
Federico Beffa
53b9684e33
gnu: Add chez-mit.
...
* gnu/packages/chez.scm (chez-mit): New variable.
2016-10-31 16:13:23 +01:00
Federico Beffa
08fc0d68f0
gnu: haskell-mode: Update to 16.1.
...
* gnu/packages/emacs.scm (haskell-mode): Update to 16.1.
[inputs]: Add 'emacs-el-search' and 'emacs-stream'.
[propagated-inputs]: Add 'emacs-dash'.
[arguments]: Add modules. Adapt 'pre-build' and 'install' phases.
2016-10-31 16:13:21 +01:00
Federico Beffa
0fc06f3eba
gnu: Add emacs-el-search.
...
* gnu/packages/emacs.scm (emacs-el-search): New variable.
2016-10-31 16:13:17 +01:00
Federico Beffa
8f50634ba4
gnu: Add emacs-stream.
...
* gnu/packages/emacs.scm (emacs-stream): New varaible.
2016-10-31 16:13:09 +01:00
Ludovic Courtès
5bde4503ee
gnu: ld-wrapper-boot0: Work around strict evaluation of (%current-system).
...
Reported by Mark H Weaver <mhw@netris.org>
Partly fixes <http://bugs.gnu.org/24832 >.
'ld-wrapper-boot0' was evaluating strictly instead of lazily, leading to
invalid system types.
* gnu/packages/base.scm (make-ld-wrapper): Turn #:target into a
one-argument procedure. Honor it.
* gnu/packages/commencement.scm (ld-wrapper-boot0): Fix 'name' argument
to 'make-ld-wrapper'. Make #:target argument a procedure.
* gnu/packages/cross-base.scm (cross-gcc): Adjust #:target argument.
2016-10-31 16:06:30 +01:00
Marius Bakke
c907beec92
gnu: fio: Update to 2.15.
...
* gnu/packages/benchmark.scm (fio): Update to 2.15.
2016-10-31 11:15:08 +00:00
Marius Bakke
58fdab1d13
gnu: Add ccid.
...
* gnu/packages/security-token.scm (ccid): New variable.
2016-10-31 10:10:26 +00:00
Ricardo Wurmus
6d1b3bf55b
gnu: openocd: Correct license.
...
* gnu/packages/embedded.scm (openocd)[license]: Change to gpl2+.
2016-10-31 10:41:54 +01:00
Leo Famulari
77e9c9931e
gnu: shotwell: Fix build by including 'gtk-update-icon-cache'.
...
* gnu/packages/gnome.scm (shotwell)[native-inputs]: Add gtk+:bin.
2016-10-31 01:28:52 -04:00
Leo Famulari
205f0107bb
Merge branch 'master' into core-updates
2016-10-30 19:19:21 -04:00
Leo Famulari
b89cbf5832
gnu: libtiff: Fix CVE-2016-5652.
...
* gnu/packages/patches/libtiff-CVE-2016-5652.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff-fixed)[source]: Use it.
2016-10-30 19:07:49 -04:00
Ludovic Courtès
a7db8540a7
gnu: guix: Always depend on the development dependencies.
...
Suggested by Chris Marusich <cmmarusich@gmail.com> at
<https://lists.gnu.org/archive/html/guix-devel/2016-10/msg00425.html >.
* gnu/packages/package-management.scm (guix-0.11.0)[native-inputs]: Add
Autoconf, Automake, Gettext, Texinfo, Graphviz, and Help2man.
(guix-devel)[native-inputs]: Remove.
2016-10-30 23:14:27 +01:00
Ludovic Courtès
ffba9d598e
gnu: emacs-debbugs: Update to 0.11.
...
* gnu/packages/emacs.scm (emacs-debbugs): Update to 0.11.
2016-10-30 22:59:46 +01:00
Arun Isaac
b7f3cf2c9a
gnu: Add nethogs.
...
* gnu/packages/networking.scm (nethogs): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-30 15:38:40 -04:00
Danny Milosavljevic
45b4f12727
gnu: Add python-imagesize.
...
* gnu/packages/python.scm (python-imagesize, python2-imagesize): New variables.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-10-30 15:31:11 -04:00
Ricardo Wurmus
67a3b2dd4e
gnu: python-pyusb: Prettify library substitution.
...
* gnu/packages/libusb.scm (python-pyusb)[arguments]: Use srfi-1 to make
the "fix-libusb-reference" phase clearer.
2016-10-30 18:57:18 +01:00
Ricardo Wurmus
a8dd960ac0
gnu: python-joblib: Disable failing tests.
...
* gnu/packages/python.scm (python-joblib)[arguments]: Add phase to
disable failing tests.
2016-10-30 18:54:41 +01:00
Ricardo Wurmus
f34ef3317e
gnu: python-joblib: Update to 0.10.3.
...
* gnu/packages/python.scm (python-joblib): Update to 0.10.3.
[native-inputs]: Add python-sphinx, python-docutils, python-numpydoc.
2016-10-30 17:04:24 +01:00
Efraim Flashner
bae678296a
gnu: python-waf: Download over https.
...
* gnu/packages/python.scm (python-waf)[source]: Use https.
2016-10-30 10:43:53 +02:00
Efraim Flashner
31c6bfed58
gnu: samba: Update to 4.5.1.
...
* gnu/packages/samba.scm (samba): Update to 4.5.1.
2016-10-30 10:41:31 +02:00
Leo Famulari
e3c1311a5d
gnu: git: Update to 2.10.2.
...
* gnu/packages/version-control.scm (git): Update to 2.10.2.
2016-10-29 23:02:14 -04:00
Leo Famulari
593dfdc33b
Merge branch 'master' into core-updates
2016-10-29 22:16:47 -04:00
Leo Famulari
59f1298558
gnu: python-nltk: Disable the test suite.
...
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-nltk to fail.
* gnu/packages/python.scm (python-nltk, python2-nltk)[arguments]:
Disable the tests.
2016-10-29 22:16:19 -04:00
Leo Famulari
2ddbfa8c06
gnu: python-pyquery: Add inputs for test suite.
...
* gnu/packages/python.scm (python-pyquery,
python2-pyquery)[native-inputs]: Add python-webob and python-webtest.
2016-10-29 22:16:19 -04:00
宋文武
ad967bf08d
gnu: dico: Fix test failure.
...
* gnu/packages/dico.scm (dico)[source]: Add 'snippet' and 'modules'.
2016-10-30 09:53:11 +08:00
Leo Famulari
326f8285b3
gnu: python-graphql-core: Disable the test suite.
...
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-graph-ql to fail.
* gnu/packages/python.scm (python-graphql-core,
python2-graphql-core)[arguments]: Disable the tests.
2016-10-29 21:50:58 -04:00
Leo Famulari
062c7e43ed
Merge branch 'master' into core-updates
2016-10-29 21:44:44 -04:00
Leo Famulari
269d9172ff
gnu: python-pika: Add inputs for test suite.
...
* gnu/packages/python.scm (python-pika, python2-pika)[native-inputs]: Add
python-pyev, python-tornado.
2016-10-29 21:43:24 -04:00
Leo Famulari
329b4b3b69
gnu: Add python-pyev.
...
* gnu/packages/python.scm (python-pyev, python2-pyev): New variables.
2016-10-29 21:43:24 -04:00
Leo Famulari
bae1871059
gnu: python-prompt-toolkit: Disable the test suite.
...
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-prompt-toolkit to fail.
* gnu/packages/python.scm (python-prompt-toolkit,
python2-prompt-toolkit)[arguments]: Disable the tests.
2016-10-29 21:43:24 -04:00
Leo Famulari
10797a0ae0
gnu: python-publicsuffix2: Disable the test suite.
...
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-publicsuffix2 to fail.
* gnu/packages/python.scm (python-publicsuffix2, python2-publicsuffix2)
[arguments]: Disable the tests.
2016-10-29 21:43:23 -04:00
Leo Famulari
a2eab4223d
gnu: python-pyechonest: Remove package.
...
* gnu/packages/music.scm (python-pyechonest): Remove variable.
2016-10-29 21:43:14 -04:00
Theodoros Foradis
5b83b7b854
gnu: Add openocd.
...
* gnu/packages/embedded.scm (openocd): New variable.
* gnu/packages/patches/openocd-nrf52.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add the patch.
2016-10-30 02:34:26 +01:00
David Craven
91ba693586
gnu: Add jimtcl.
...
* gnu/packages/embedded.scm (jimtcl): New variable.
2016-10-30 02:33:58 +01:00
David Craven
e5e45c067d
gnu: Add libjaylink.
...
* gnu/packages/embedded.scm (libjaylink): New variable.
2016-10-30 02:33:53 +01:00
Theodoros Foradis
3d74f12e63
gnu: Add hidapi.
...
* gnu/packages/libusb.scm (hidapi): New variable.
2016-10-30 02:03:04 +02:00
Theodoros Foradis
94f36a4f5e
gnu: Add gdb-arm-none-eabi.
...
* gnu/packages/embedded.scm (gdb-arm-none-eabi): New variable.
2016-10-30 02:02:46 +02:00
Tobias Geerinckx-Rice
f4fe6c991c
gnu: cups-filters: Remove duplicate ‘--with-gs-path=’ flag.
...
* gnu/packages/cups.scm (cups-filters)[arguments]: Remove redundant
‘--with-gs-path=’ from #:configure-flags, left over from a botched merge.
2016-10-30 01:15:53 +02:00
Tobias Geerinckx-Rice
4ab016e0ab
gnu: cups-filters: Update to 1.11.5.
...
* gnu/packages/cups.scm (cups-filters): Update to 1.11.5.
[arguments]: Add ‘--with-gs-path=’ to #:configure-flags.
[inputs]: Add mupdf.
2016-10-30 01:08:15 +02:00
David Craven
eaf72e218e
gnu: icecat: Enable gtk3 support.
...
* gnu/packages/gnuzilla.scm (icecat)[inputs]: Add gtk+.
[arguments]: Use --enable-default-toolkit=cairo-gtk3.
2016-10-30 01:03:09 +02:00
David Craven
225d6c049e
gnu: sdcc: Enable ucsim.
...
* gnu/packages/sdcc.scm (arguments)[configure-flags]: Add --enable-ucsim.
2016-10-30 01:03:09 +02:00
Tobias Geerinckx-Rice
6cf626e8b3
gnu: Add yadifa.
...
* gnu/packages/dns.scm (yadifa): New variable.
2016-10-30 00:53:50 +02:00
Tobias Geerinckx-Rice
8ed14711dc
gnu: hplip: Update to 3.16.10.
...
* gnu/packages/cups.scm (hplip): Update to 3.16.10.
2016-10-30 00:47:28 +02:00
David Craven
9efa472fba
gnu: plasma-framework: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (plasma-framework): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
6c6e8b19e4
gnu: kxmlrpcclient: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kxmlrpcclient): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
19fbf93f34
gnu: kxmlgui: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kxmlgui): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
8b9b0e5eb7
gnu: kwallet: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kwallet): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
f07f67093d
gnu: ktextwidgets: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (ktextwidgets): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
b0791cf9aa
gnu: ktexteditor: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (ktexteditor): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
886d8155c1
gnu: kservice: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kservice): Update to 5.27.0.
[native-inputs]: Add bison and flex-2.6.1.
2016-10-29 23:51:43 +02:00
David Craven
dc219cc6da
gnu: krunner: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (krunner): Update to 5.27.0.
[arguments]: Return #t.
2016-10-29 23:51:43 +02:00
David Craven
3a1e972d50
gnu: kpeople: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kpeople): Update to 5.27.0.
[arguments]: Return #t.
2016-10-29 23:51:43 +02:00
David Craven
33fa4658bd
gnu: kparts: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kparts): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
59cb98e135
gnu: knotifyconfig: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (knotifyconfig): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
7064ad3fca
gnu: knewstuff: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (knewstuff): Update to 5.27.0.
[arguments]: Return #t.
2016-10-29 23:51:43 +02:00
David Craven
ed3634e756
gnu: kio: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kio): Update to 5.27.0.
[arguments]: Return #t.
2016-10-29 23:51:43 +02:00
David Craven
89d522a360
gnu: kinit: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kinit): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
c8ddc56e6c
gnu: kiconthemes: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kiconthemes): Update to 5.27.0.
[arguments]: Return #t.
2016-10-29 23:51:43 +02:00
David Craven
2b677becbd
gnu: kglobalaccel: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kglobalaccel): Update to 5.27.0.
[inputs]: Add kservice.
2016-10-29 23:51:43 +02:00
David Craven
25ebad65bf
gnu: kemoticons: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kemoticons): Update to 5.27.0.
[arguments]: Return #t.
2016-10-29 23:51:43 +02:00
David Craven
aa072198c6
gnu: kdesu: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kdesu): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
9caef00bd1
gnu: kdesignerplugin: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kdesignerplugin): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
8e963d123c
gnu: kded: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kded): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
46e1ac0be8
gnu: kdeclarative: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kdeclarative): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
986d0eae65
gnu: kconfigwidgets: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kconfigwidgets): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
8ed8a9f53a
gnu: kcmutils: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kcmutils): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
b58e9bea2e
gnu: kbookmarks: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kbookmarks): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
4902494f6d
gnu: kactivities-stats: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kactivities-stats): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
04fb93e0e3
gnu: kactivities: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kactivities): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
442f2beae0
gnu: baloo: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (baloo): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
f7c2026fea
gnu: kunitconversion: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kunitconversion): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
84164f7ff8
gnu: kpty: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kpty): Update to 5.27.0 and fix
indentation.
2016-10-29 23:51:43 +02:00
David Craven
0e6c305748
gnu: kpackage: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kpackage): Update to 5.27.0 and fix
indentation.
2016-10-29 23:51:43 +02:00
David Craven
7507399846
gnu: knotifications: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (knotifications): Update to 5.27.0 and
fix indentation.
2016-10-29 23:51:43 +02:00
David Craven
4a9f3bf33b
gnu: kjobwidgets: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kjobwidgets): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
2d64fdb157
gnu: kimageformats: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kimageformats): Update to 5.27.0 and
fix indentation.
2016-10-29 23:51:43 +02:00
David Craven
3f34662b12
gnu: kfilemetadata: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kfilemetadata): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
f5dae6aec1
gnu: kdoctools: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kdoctools): Update to 5.27.0 and fix
indentation.
2016-10-29 23:51:43 +02:00
David Craven
075eeb355b
gnu: kcrash: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kcrash): Update to 5.27.0 and fix
indentation.
2016-10-29 23:51:43 +02:00
David Craven
17b5144a18
gnu: kcompletion: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kcompletion): Update to 5.27.0 and
fix indentation.
2016-10-29 23:51:43 +02:00
David Craven
62dee732f4
gnu: kauth: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kauth): Update to 5.27.0 and fix
indentation.
2016-10-29 23:51:43 +02:00
David Craven
01fc411d96
gnu: threadweaver: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (threadweaver): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
71b37f7ab6
gnu: sonnet: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (sonnet): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
6ad3befef2
gnu: solid: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (solid): Update to 5.27.0.
[native-inputs]: Add flex-2.6.1.
2016-10-29 23:51:43 +02:00
David Craven
beb21382d3
gnu: oxygen-icons: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (oxygen-icons): Update to 5.27.0.
[native-inputs]: Add fdupes.
2016-10-29 23:51:43 +02:00
David Craven
c3fefc81ce
gnu: networkmanager-qt: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (networkmanager-qt): Update to 5.27.0
and fix indentation.
2016-10-29 23:51:43 +02:00
David Craven
48e789daa8
gnu: modemmanager-qt: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (modemmanager-qt): Update to 5.27.0
and fix indentation.
2016-10-29 23:51:43 +02:00
David Craven
48311df949
gnu: kwindowsystem: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kwindowsystem): Update to 5.27.0 and
fix indentation.
2016-10-29 23:51:43 +02:00
David Craven
5a3f070931
gnu: kwidgetsaddons: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kwidgetsaddons): Update to 5.27.0 and
fix indentation.
2016-10-29 23:51:43 +02:00
David Craven
3dfcaf33c8
gnu: kwayland: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kwayland): Update to 5.27.0 and fix
indentation.
2016-10-29 23:51:43 +02:00
David Craven
a7ec016cd5
gnu: kplotting: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kplotting): Update to 5.27.0 and fix
indentation.
2016-10-29 23:51:43 +02:00
David Craven
701d7a9b50
gnu: kitemviews: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kitemviews): Update to 5.27.0 and fix
indentation.
2016-10-29 23:51:43 +02:00
David Craven
110e4bea7a
gnu: kitemmodels: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kitemmodels): Update to 5.27.0 and
fix indentation.
2016-10-29 23:51:43 +02:00
David Craven
bdf84c9e2f
gnu: kidletime: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kidletime): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
e751556a14
gnu: ki18n: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (ki18n): Update to 5.27.0 and fix
indentation.
2016-10-29 23:51:43 +02:00
David Craven
ee6cebf6a9
gnu: kguiaddons: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kguiaddons): Update to 5.27.0 and fix
indentation.
2016-10-29 23:51:43 +02:00
David Craven
ce45f9ef7b
gnu: kdnssd: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kdnssd): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
e361ff6a2e
gnu: kdbusaddons: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kdbusaddons): Update to 5.27.0 and
fix indentation.
2016-10-29 23:51:43 +02:00
David Craven
b69b81ca2e
gnu: kcoreaddons: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kcoreaddons): Update to 5.27.0 and
fix indentation.
2016-10-29 23:51:43 +02:00
David Craven
a6fec16590
gnu: kconfig: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kconfig): Update to 5.27.0 and fix
indentation.
2016-10-29 23:51:43 +02:00
David Craven
78fc358f3e
gnu: kcodecs: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kcodecs): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
ea95b701dc
gnu: karchive: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (karchive): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
8fea1a2378
gnu: kapidox: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (kapidox): Update to 5.27.0 and fix
indentation.
2016-10-29 23:51:43 +02:00
David Craven
02dc8847c8
gnu: breeze-icons: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (breeze-icons): Update to 5.27.0.
[native-inputs]: Add fduptes and libxml2.
[arguments]: Disable tests.
2016-10-29 23:51:43 +02:00
David Craven
bfa96eba56
gnu: bluez-qt: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (bluez-qt): Update to 5.27.0 and
fix indentation.
2016-10-29 23:51:43 +02:00
David Craven
5eb1b33b6b
gnu: attica: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (attica): Update to 5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
84dee85291
gnu: phonon: Fix indentation.
...
* gnu/packages/kde-frameworks.scm (phonon): Fix indentation.
2016-10-29 23:51:43 +02:00
David Craven
bd0fc238f8
gnu: kpmcore: Fix indentation.
...
* gnu/packages/kde-frameworks.scm (kpmcore): Fix indentation.
2016-10-29 23:51:43 +02:00
David Craven
443a60aaae
gnu: gpgmepp: Update to 16.08.2.
...
* gnu/packages/kde-frameworks (gpgmepp): Update to 16.08.2.
2016-10-29 23:51:43 +02:00
David Craven
1c484e980f
gnu: extra-cmake-modules: Update to 5.27.0.
...
* gnu/packages/kde-frameworks.scm (extra-cmake-modules): Update to
5.27.0.
2016-10-29 23:51:43 +02:00
David Craven
b68bf48af9
gnu: Add flex-2.6.1.
...
* gnu/packages/flex.scm (flex-2.6.1): New variable.
2016-10-29 23:51:43 +02:00
Alex Vong
ee5fb7ee50
gnu: Add python2-rpython.
...
* gnu/packages/python.scm (python2-rpython): New variable.
2016-10-29 23:49:05 +02:00
Efraim Flashner
8f210c0e0e
gnu: ccache: Update to 3.3.3.
...
* gnu/packages/ccache.scm (ccache): Update to 3.3.3.
2016-10-30 00:05:26 +03:00
Efraim Flashner
7dd55dfeca
gnu: python-waf: Update to 1.9.5.
...
* gnu/packages/python.scm (python-waf): Update to 1.9.5.
[arguments]: Shorten custom build phase.
[source]: Use http.
[home-page]: Use http.
2016-10-30 00:05:13 +03:00
Efraim Flashner
603d55de4a
gnu: ffmpeg: Update to 3.2.
...
* gnu/packages/video.scm (ffmpeg): Update to 3.2.
2016-10-29 22:16:44 +03:00
Efraim Flashner
0b37c4cda7
gnu: vapoursynth: Update to 35.
...
* gnu/packages/video.scm (vapoursynth): Update to 35.
2016-10-29 22:16:44 +03:00
Efraim Flashner
812de5bf1e
gnu: offlineimap: Update to 7.0.9.
...
* gnu/packages/mail.scm (offlineimap): Update to 7.0.9.
2016-10-29 22:16:43 +03:00
Efraim Flashner
4d73cb5441
gnu: chess: Update to 6.2.4.
...
* gnu/packages/games.scm (chess): Update to 6.2.4.
[home-page]: Use https.
2016-10-29 22:16:42 +03:00
Marius Bakke
a7e75125c8
gnu: vim: Update to 8.0.0054.
...
* gnu/packages/vim.scm (vim): Update to 8.0.0054.
2016-10-29 20:04:57 +01:00
Tobias Geerinckx-Rice
dadf6622e9
gnu: borg: Update to 1.0.8.
...
* gnu/packages/backup.scm (borg): Update to 1.0.8.
2016-10-29 14:24:51 +02:00
Tobias Geerinckx-Rice
58c4f11e43
gnu: Add radeontop.
...
* gnu/packages/linux.scm (radeontop): New variable.
2016-10-29 14:19:01 +02:00
Mark H Weaver
b8df914f37
gnu: linux-libre: Update to 4.8.5.
...
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.5.
2016-10-28 20:11:20 -04:00
Mark H Weaver
a56b3229f4
gnu: linux-libre@4.4: Update to 4.4.28.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.28.
2016-10-28 20:09:02 -04:00
Eric Bavier
fba78d18c2
gnu: mumps: Upgrade to 5.0.2.
...
* gnu/packages/maths.scm (mumps): Upgrade to 5.0.2.
[arguments]: Properly return boolean from install phase.
2016-10-28 15:53:32 -05:00
Marius Bakke
a9afb956b3
gnu: vim: Update to 8.0.0051.
...
* gnu/packages/vim.scm (vim): Update to 8.0.0051.
[source]: Change to github release archive.
2016-10-28 20:55:09 +01:00
Leo Famulari
0df955401f
Merge branch 'master' into core-updates
2016-10-28 13:59:32 -04:00
Leo Famulari
044ac8d294
gnu: python-twobitreader: Update to 3.1.4.
...
* gnu/packages/bioinformatics.scm (python-twobitreader, python2-twobitreader):
Update to 3.1.4.
2016-10-28 13:59:11 -04:00
Leo Famulari
900fb8d005
gnu: python-twobitreader: Disable the test suite.
...
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-twobitreader to fail.
* gnu/packages/bioinformatics.scm (python-twobitreader,
python2-twobitreader)[arguments]: Disable the tests.
2016-10-28 13:59:11 -04:00
Roel Janssen
ed8bc028f7
gnu: Add emacs-org-trello.
...
* gnu/packages/emacs.scm (emacs-org-trello): New variable.
2016-10-28 19:50:32 +02:00
Leo Famulari
a6447e7fb6
Merge branch 'master' into core-updates
2016-10-28 13:40:17 -04:00
Leo Famulari
e359b31a60
gnu: python-wsgiproxy2: Disable the test suite.
...
* gnu/packages/python.scm (python-wsgiproxy2, python2-wsgiproxy2)[arguments]:
Disable the tests.
2016-10-28 13:39:38 -04:00
Leo Famulari
67fd4a12cb
gnu: python-beautifulsoup4: Update to 4.5.1.
...
* gnu/packages/python.scm (python-beautifulsoup4, python2-beautifulsoup4):
Update to 4.5.1.
2016-10-28 13:39:38 -04:00
Leo Famulari
5f37f0b66e
gnu: python-beautifulsoup4: Run the test suite.
...
* gnu/packages/python.scm (python-beautifulsoup4)[arguments]: Add field
run python-2 -> python-3 conversion script and test suite.
(python2-beautifulsoup4)[arguments]: Specify use of python-2.
2016-10-28 13:39:37 -04:00
Leo Famulari
92c3ef2cf3
gnu: python-feedparser: Disable the test suite.
...
The tests were silently skipped with Python 3.4. With Python 3.5, this caused
the build of python-feedparser to fail.
* gnu/packages/python.scm (python-feedparser, python2-feedparser)[arguments]:
Disable the tests.
2016-10-28 13:39:37 -04:00
Leo Famulari
95bff4f697
gnu: libwebp: Fix CVE-2016-9085.
...
* gnu/packages/patches/libwebp-CVE-2016-9085.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libwebp)[source]: Use it.
2016-10-28 13:39:37 -04:00
Leo Famulari
b2ed5ca7aa
gnu: libwebp: Update to 0.5.1.
...
* gnu/packages/image.scm (libwebp): Update to 0.5.1.
2016-10-28 13:39:33 -04:00
Roel Janssen
36e5d10387
gnu: Add emacs-request.
...
* gnu/packages/emacs.scm (emacs-request): New variable.
2016-10-28 19:29:35 +02:00
Thomas Danckaert
fc381a3325
gnu: Add qwt.
...
* gnu/packages/qt.scm (qwt): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-28 14:47:36 +01:00
宋文武
aa98b3b273
gnu: gxmessage: Don't install 'icon-theme.cache'.
...
* gnu/packages/gxmessage.scm (gxmessage)[arguments]: Add
'skip-gtk-update-icon-cache' phase.
[native-inputs]: Remove gtk+:bin.
2016-10-28 21:04:11 +08:00
Mark H Weaver
3d82676919
Merge branch 'master' into core-updates
2016-10-27 20:21:26 -04:00
Efraim Flashner
f9a65318dd
gnu: python-parse: Use 'modify-phases' syntax.
...
* gnu/packages/python.scm (python-parse)[arguments]: Use 'modify-phases'
syntax.
2016-10-27 23:29:56 +03:00
Efraim Flashner
aa6c09ed71
gnu: python-parse: Fix failing test.
...
* gnu/packages/python.scm (python-parse)[origin]: Add patch.
* gnu/packages/patches/python-parse-too-many-fields.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-10-27 23:28:07 +03:00
Efraim Flashner
d18c69aa2a
gnu: python-pytest-django: Add missing test input.
...
* gnu/packages/django.scm (python-pytest-django)[native-inputs]: Add
python-django.
2016-10-27 22:27:31 +03:00
Efraim Flashner
fa7cd33378
gnu: python-django-filter: Add inputs for tests.
...
* gnu/packages/django.scm (python-django-filter)[native-inputs]: Add
python-django, python-mock.
2016-10-27 22:18:30 +03:00
Efraim Flashner
13c4d8746b
gnu: python-wtforms: Skip optional tests.
...
* gnu/packages/python.scm (python-wtforms)[arguments]: Add a phase
preventing tests from failing when optional tests aren't run.
2016-10-27 22:13:22 +03:00
Efraim Flashner
b6e0804953
gnu: lightning: Add missing input.
...
* gnu/packages/assembly.scm (lightning)[native-inputs]: Add zlib.
2016-10-27 21:13:05 +03:00
Roel Janssen
7500e42b3e
gnu: Add r-mutationalpatterns.
...
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): New variable.
2016-10-27 20:07:05 +02:00
Efraim Flashner
377bfbc1f8
gnu: gxmessage: Add missing input.
...
* gnu/packages/gxmessage.scm (gxmessage)[native-inputs]: Add gtk+3-bin.
2016-10-27 21:03:08 +03:00
Efraim Flashner
327be74720
gnu: jasper: Updat eto 1.900.16.
...
* gnu/packages/image.scm (japer): Update to 1.900.16.
2016-10-27 20:14:17 +03:00
Kei Kebreau
233fbb6102
gnu: windowmaker: Add support for more image formats.
...
* gnu/packages/gnustep.scm (windowmaker)[inputs]: Add giflib, libpng,
and libtiff.
2016-10-27 10:51:05 -04:00
Roel Janssen
b5ce25cc0e
gnu: r: Use uname from Guix
...
* gnu/packages/statistics.scm (r): Use uname from Guix.
2016-10-27 16:37:24 +02:00
Marius Bakke
6178274d19
gnu: python-urllib3: Update to 1.18.1.
...
* gnu/packages/python.scm (python-urllib3): Update to 1.18.1.
[home-page]: Use https URL.
2016-10-27 14:03:07 +01:00
Ludovic Courtès
631fda7e90
gnu: Add mdadm-static.
...
* gnu/packages/linux.scm (mdadm-static): New variable.
2016-10-27 13:48:52 +02:00
Efraim Flashner
7d876afdd8
gnu: libmikmod: Update to 3.3.10.
...
* gnu/packages/sdl.scm (libmikmod): Update to 3.3.10.
2016-10-27 12:23:04 +03:00
Efraim Flashner
355d8e873b
gnu: sdl2: Update to 2.0.5.
...
* gnu/packages/sdl.scm (sdl2): Update to 2.0.5.
2016-10-27 12:23:04 +03:00
Efraim Flashner
5d5790ce44
gnu: Use 'https' for libsdl urls.
...
* gnu/packages/sdl.scm (sdl, sdl2, sdl-image, sdl-mixer, sdl-net)
(sdl-ttf, sdl2-image, sdl2-ttf)[source]: Use https.
[home-page]: Use https.
2016-10-27 12:23:03 +03:00
Tobias Geerinckx-Rice
483b7ce7ae
gnu: mcelog: Update to 144.
...
* gnu/packages/linux.scm (mcelog): Update to 144.
2016-10-27 11:03:34 +02:00
Tobias Geerinckx-Rice
6270769dc2
gnu: btrfs-progs: Update to 4.8.2.
...
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.2.
2016-10-27 11:03:34 +02:00
Mike Gerwitz
cd9ed6c1cb
gnu: gnupg: Add support for pcsc-lite.
...
* gnu/packages/gnupg.scm (gnupg)[inputs]: Add pcsc-lite.
[arguments]: Rename phase 'patch-config-files' to 'patch-paths'. Patch
`scd/scdaemon.c' with absolute path of libpcsclite.so.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-27 09:56:54 +01:00
Mike Gerwitz
a6b256affc
gnu: Add pcsc-lite.
...
* gnu/packages/security-token.scm (pcsc-lite): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-10-27 09:56:52 +01:00
ng0
8888fe826c
gnu: Add dbacl.
...
* gnu/packages/textutils.scm (dbacl): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-27 11:42:39 +03:00
Efraim Flashner
5fd84e288c
gnu: valgrind: Use 'modify-phases' syntax.
...
* gnu/packages/valgrind.scm (valgrind)[arguments]: Use 'modify-phases'
syntax.
2016-10-27 11:42:38 +03:00
Efraim Flashner
e68168eb87
gnu: valgrind: Update to 3.12.0.
...
* gnu/packages/valgrind.scm (valgrind): Update to 3.12.0.
2016-10-27 11:42:29 +03:00
Hartmut Goebel
49a531f545
gnu: python-pathlib2: Add comment.
...
As suggested by Efraim Flashner.
* gnu/packages/python.scm (python-pathlib2): Add comment.
2016-10-27 10:09:10 +02:00
Leo Famulari
f02fb6dd6b
gnu: btrfs-progs: Update to 4.8.2.
...
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.2.
2016-10-27 00:43:37 -04:00
Leo Famulari
9045c086df
gnu: blender: Update to 2.78a.
...
* gnu/packages/graphics.scm (blender): Update to 2.78a.
2016-10-27 00:30:47 -04:00
Leo Famulari
fad8bf977d
gnu: python-s3transfer: Run the tests.
...
* gnu/packages/python.scm (python-s3transfer, python2-s3transfer)[arguments]:
Use python-nose to run the tests.
[native-inputs]: Add python-mock and python-nose.
2016-10-26 21:41:28 -04:00
Leo Famulari
522fc32ebd
gnu: shotwell: Update to 0.25.0.
...
* gnu/packages/gnome.scm (shotwell): Update to 0.25.0.
[inputs]: Add gcr.
2016-10-26 20:10:05 -04:00
Leo Famulari
30b1267830
gnu: vdirsyncer: Update to 0.14.0.
...
* gnu/packages/dav.scm (vdirsyncer): Update to 0.14.0.
2016-10-26 19:56:15 -04:00
Leo Famulari
02c73adcdf
Merge branch 'master' into core-updates
2016-10-26 19:00:06 -04:00
Leo Famulari
a19da40630
gnu: perl-www-curl: Fix build failure.
...
* gnu/packages/patches/perl-www-curl-remove-symbol.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/web.scm (perl-www-curl)[source]: Use it.
2016-10-26 18:44:16 -04:00
ng0
5d73e30000
gnu: Add lci.
...
* gnu/packages/lolcode.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-26 20:39:27 +03:00
Christopher Allan Webber
8caeb11772
gnu: Add autossh.
...
* gnu/packages/ssh.scm (autossh): New variable.
2016-10-26 11:22:17 -05:00
Ricardo Wurmus
aba6463975
gnu: r: Update to 3.3.1.
...
* gnu/packages/statistics.scm (r): Update to 3.3.1.
2016-10-26 18:14:17 +02:00
Ricardo Wurmus
a8e893b0b8
gnu: r-matrixstats: Update to 0.51.0.
...
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.51.0.
2016-10-26 16:23:32 +02:00
Ricardo Wurmus
fd54f65e72
gnu: r-r-utils: Update to 2.4.0.
...
* gnu/packages/statistics.scm (r-r-utils): Update to 2.4.0.
2016-10-26 16:23:32 +02:00
Ricardo Wurmus
89242ea47f
gnu: r-irlba: Update to 2.1.2.
...
* gnu/packages/statistics.scm (r-irlba): Update to 2.1.2.
2016-10-26 16:23:31 +02:00
Ricardo Wurmus
4f2ebc16ce
gnu: r-codetools: Update to 0.2-15.
...
* gnu/packages/statistics.scm (r-codetools): Update to 0.2-15.
2016-10-26 16:23:31 +02:00
Ricardo Wurmus
cf738e961e
gnu: r-snow: Update to 0.4-2.
...
* gnu/packages/statistics.scm (r-snow): Update to 0.4-2.
2016-10-26 16:23:31 +02:00
Ricardo Wurmus
41bc22a7de
gnu: r-backports: Update to 1.0.4.
...
* gnu/packages/statistics.scm (r-backports): Update to 1.0.4.
2016-10-26 16:23:30 +02:00
Ricardo Wurmus
72263db73d
gnu: r-foreign: Update to 0.8-67.
...
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-67.
2016-10-26 16:23:30 +02:00
Ricardo Wurmus
130410d941
gnu: r-cluster: Update to 2.0.5.
...
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.5.
2016-10-26 16:23:29 +02:00
Ricardo Wurmus
e7622804aa
gnu: r-acepack: Update to 1.4.0.
...
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.0.
2016-10-26 16:23:29 +02:00
Ricardo Wurmus
bff4dc6324
gnu: r-r6: Update to 2.2.0.
...
* gnu/packages/statistics.scm (r-r6): Update to 2.2.0.
2016-10-26 16:23:29 +02:00
Ricardo Wurmus
e0a9093139
gnu: r-evaluate: Update to 0.10.
...
* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.
2016-10-26 16:23:28 +02:00
Ricardo Wurmus
2d9da70bbe
gnu: r-reshape2: Update to 1.4.2.
...
* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.2.
2016-10-26 16:23:28 +02:00
Ricardo Wurmus
c2a9e99134
gnu: r-stringi: Update to 1.1.2.
...
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.2.
2016-10-26 16:23:28 +02:00
Ricardo Wurmus
03f72a1e1f
gnu: r-matrix: Update to 1.2-7.1.
...
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-7.1.
2016-10-26 16:23:27 +02:00
Ricardo Wurmus
9e087a1fde
gnu: r-colorspace: Update to 1.2-7.
...
* gnu/packages/statistics.scm (r-colorspace): Update to 1.2-7.
2016-10-26 16:23:27 +02:00
Ricardo Wurmus
e1c2b7e2e1
gnu: r-jsonlite: Update to 1.1.
...
* gnu/packages/web.scm (r-jsonlite): Update to 1.1.
2016-10-26 16:23:27 +02:00
Ricardo Wurmus
2ffcd6607b
gnu: r-curl: Update to 2.2.
...
* gnu/packages/web.scm (r-curl): Update to 2.2.
2016-10-26 16:23:26 +02:00
Ricardo Wurmus
a46cc723ff
gnu: r-seqinr: Update to 3.3-3.
...
* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.3-3.
2016-10-26 16:23:26 +02:00
Ricardo Wurmus
062737a178
gnu: r-rcpparmadillo: Update to 0.7.500.0.0.
...
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.500.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.500.0.0.
2016-10-26 16:23:25 +02:00
Ricardo Wurmus
7397cd9e3f
gnu: armadillo: Update to 7.500.0.
...
* gnu/packages/maths.scm (armadillo): Update to 7.500.0.
2016-10-26 16:23:25 +02:00
Ricardo Wurmus
8e1369f19a
gnu: r-rmarkdown: Update to 1.1.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.1.
[propagated-inputs]: Add r-evaluate, r-tibble.
2016-10-26 16:23:25 +02:00
Ricardo Wurmus
c70271ec48
gnu: bioperl-minimal: Update to 1.7.0.
...
* gnu/packages/bioinformatics.scm (bioperl-minimal): Update to 1.7.0.
2016-10-26 16:23:24 +02:00
Marius Bakke
39df253e2b
gnu: mupdf: Modify CVE-2016-8674 patch to apply to 1.9a.
...
The fix from upstream did not apply cleanly due to many context changes.
This was adapted by cloning mupdf 1.9a from git and fixing conflicts
after applying our patches and cherry-picking upstream commit 1e03c06.
This is a follow-up to 47a04fca99
.
* gnu/packages/patches/mupdf-CVE-2016-8674.patch: Adapt to 1.9a.
2016-10-26 15:03:42 +01:00
ng0
b2a2232c33
gnu: python-certifi: Update to 2016.8.31.
...
* gnu/packages/python.scm (python-certifi): Update to 2016.8.31.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-26 14:31:16 +03:00
Marius Bakke
07b1fb8675
gnu: security-token: Use 'license:' prefix.
...
* gnu/packages/security-token.scm (libyubikey)[license]: Add prefix.
(ykclient)[license]: Add prefix.
2016-10-26 11:00:58 +01:00
Marius Bakke
f9c339603d
gnu: yubico.scm: Rename to security-token.scm.
...
* gnu/packages/yubico.scm: Delete file.
* gnu/packages/security-token.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
2016-10-26 10:45:49 +01:00
Marius Bakke
7a6213cbd7
gnu: offlineimap: Install documentation.
...
* gnu/packages/mail.scm (offlineimap)[native-inputs]: Add asciidoc and
libxslt.
[arguments]: Add phases 'build-documentation' and
'install-documentation' to build and install manpages. Also remove
unneeded key 'inputs' from 'wrap-binary' phase.
2016-10-26 10:45:49 +01:00
Marius Bakke
d2a9b531fb
gnu: notmuch: Update to 0.23.1.
...
* gnu/packages/patches/notmuch-emacs-25-compatibility-fix.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/mail.scm (notmuch): Update to 0.23.1. Remove patch.
2016-10-26 10:45:49 +01:00
Efraim Flashner
8f5f6c922f
gnu: vlc: Add x265 support.
...
* gnu/packages/video.scm (vlc)[inputs]: Add x265.
2016-10-26 12:19:19 +03:00
Efraim Flashner
e3cb00d210
gnu: gst-plugins-bad: Add x265 support.
...
* gnu/packages/gstreamer.scm (gst-plugins-bad)[inputs]: Add x265.
2016-10-26 12:19:18 +03:00
Efraim Flashner
d505801a06
gnu: ffmpeg: Add x265 support.
...
* gnu/packages/video.scm (ffmpeg)[inputs]: Add x265.
[arguments]: Add '--enable-libx265' flag.
2016-10-26 12:19:18 +03:00
Efraim Flashner
7bc7ffc243
gnu: Add x265.
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* gnu/packages/video.scm (x265): New variable.
2016-10-26 12:19:18 +03:00
ng0
1df790d50d
gnu: Add psyclpc.
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* gnu/packages/psyc.scm (psyclpc): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-26 11:29:35 +03:00
Ludovic Courtès
19262a718e
gnu: opensmtpd: Fix 'license' field.
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* gnu/packages/mail.scm (opensmtpd)[license]: Use LICENSE:OPENSSL, not
OPENSSL.
(opensmtpd-extras)[license]: Likewise.
2016-10-26 10:19:18 +02:00
Ricardo Wurmus
59198f8fff
gnu: r-genomationdata: Update to 1.6.0.
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* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.6.0.
2016-10-26 09:28:23 +02:00
Ricardo Wurmus
e357bec836
gnu: r-bamsignals: Update to 1.6.0.
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* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.6.0.
2016-10-26 09:28:23 +02:00
Ricardo Wurmus
53ca52f013
gnu: r-rhtslib: Update to 1.6.0.
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* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.6.0.
[native-inputs]: Add autoconf.
2016-10-26 09:28:23 +02:00
Ricardo Wurmus
da22da862b
gnu: r-zlibbioc: Update to 1.20.0.
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* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.20.0.
2016-10-26 09:28:22 +02:00
Ricardo Wurmus
809251e164
gnu: r-motifrg: Update to 1.18.0.
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* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.18.0.
2016-10-26 09:28:22 +02:00
Ricardo Wurmus
21d6c7a3e1
gnu: r-seqlogo: Update to 1.40.0.
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* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.40.0.
2016-10-26 09:28:22 +02:00
Ricardo Wurmus
51c3c4900f
gnu: r-genomation: Update to 1.6.0.
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* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.6.0.
[propagated-inputs]: Add r-rcpp, r-htslib, r-runit, r-s4vectors.
[inputs]: Add zlib.
2016-10-26 09:28:21 +02:00
Ricardo Wurmus
e92dd6f5e0
gnu: r-seqpattern: Update to 1.6.0.
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* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.6.0.
[propagated-inputs]: Add r-kernsmooth.
2016-10-26 09:28:21 +02:00
Ricardo Wurmus
acf6f7e0c3
gnu: r-impute: Update to 1.48.0.
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* gnu/packages/bioinformatics.scm (r-impute): Update to 1.48.0.
2016-10-26 09:28:21 +02:00
Ricardo Wurmus
3d74c04451
gnu: r-bsgenome: Update to 1.42.0.
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* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.42.0.
2016-10-26 09:28:20 +02:00
Ricardo Wurmus
30ec4de738
gnu: r-topgo: Update to 2.26.0.
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* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.26.0.
[propagated-inputs]: Add r-dbi.
2016-10-26 09:28:20 +02:00
Ricardo Wurmus
3587b464fc
gnu: r-graph: Update to 1.52.0.
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* gnu/packages/bioinformatics.scm (r-graph): Update to 1.52.0.
2016-10-26 09:28:19 +02:00
Ricardo Wurmus
d1b1587cad
gnu: r-go-db: Update to 3.4.0.
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* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.4.0.
2016-10-26 09:28:19 +02:00
Ricardo Wurmus
b17aac083e
gnu: r-genomicfeatures: Update to 1.26.0.
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* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.0.
2016-10-26 09:28:18 +02:00
Ricardo Wurmus
6a45fd9aea
gnu: r-rtracklayer: Update to 1.34.0.
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* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.34.0.
2016-10-26 09:28:18 +02:00
Ricardo Wurmus
4ab32f0cd6
gnu: r-genomicalignments: Update to 1.10.0.
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* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to
1.10.0.
2016-10-26 09:28:18 +02:00
Ricardo Wurmus
08da08d296
gnu: r-summarizedexperiment: Update to 1.4.0.
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* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to
1.4.0.
2016-10-26 09:28:17 +02:00
Ricardo Wurmus
c0ccef41ae
gnu: r-rsamtools: Update to 1.26.1.
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* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.26.1.
2016-10-26 09:28:17 +02:00
Ricardo Wurmus
47d39b6e7a
gnu: r-biostrings: Update to 2.42.0.
...
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.42.0.
2016-10-26 09:28:17 +02:00
Ricardo Wurmus
89559a124e
gnu: r-biocparallel: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.8.0.
2016-10-26 09:28:16 +02:00
Ricardo Wurmus
9405333186
gnu: r-biomart: Update to 2.30.0.
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* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.30.0.
2016-10-26 09:28:16 +02:00
Ricardo Wurmus
e45dc05781
gnu: r-annotationdbi: Update to 1.36.0.
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* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.36.0.
2016-10-26 09:28:16 +02:00
Ricardo Wurmus
464870caf7
gnu: r-biobase: Update to 2.34.0.
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* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.34.0.
2016-10-26 09:28:15 +02:00
Ricardo Wurmus
92a740afac
gnu: r-genomicranges: Update to 1.26.1.
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* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.26.1.
[propagated-inputs]: Add r-iranges, r-s4vectors.
2016-10-26 09:28:15 +02:00
Ricardo Wurmus
1d048589ca
gnu: r-xvector: Update to 0.14.0.
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* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.14.0.
2016-10-26 09:28:14 +02:00
Ricardo Wurmus
753bc32b8e
gnu: r-limma: Update to 3.30.0.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.0.
2016-10-26 09:28:14 +02:00
Ricardo Wurmus
37d96f1dde
gnu: r-variantannotation: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to
1.20.0.
[propagated-inputs]: Add r-biobase, r-biostrings, r-iranges,
r-rtracklayer, r-s4vectors, r-xvector.
2016-10-26 09:28:14 +02:00
Ricardo Wurmus
5e48005fa9
gnu: r-edger: Update to 3.16.0.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.0.
[propagated-inputs]: Add r-locfit.
2016-10-26 09:28:14 +02:00
Ricardo Wurmus
dece310a25
gnu: r-genomeinfodb: Update to 1.10.0.
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* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.0.
2016-10-26 09:28:13 +02:00
Ricardo Wurmus
7f354dafb1
gnu: r-iranges: Update to 2.8.0.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.0.
2016-10-26 09:28:13 +02:00
Ricardo Wurmus
b120c5f3a2
gnu: r-s4vectors: Update to 0.12.0.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.0.
2016-10-26 09:28:13 +02:00
Ricardo Wurmus
22c5d736af
gnu: r-dnacopy: Update to 1.48.0.
...
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.48.0.
2016-10-26 09:28:12 +02:00
Ricardo Wurmus
5c7b04e0c3
gnu: r-biocinstaller: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.24.0.
2016-10-26 09:28:12 +02:00
Ricardo Wurmus
f0b297e17b
gnu: r-biocgenerics: Update to 0.20.0.
...
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.20.0.
2016-10-26 09:28:11 +02:00
Ricardo Wurmus
c9b5046a18
gnu: r-grohmm: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.8.0.
2016-10-26 09:28:11 +02:00
Ricardo Wurmus
1265d3877b
gnu: r-systempiper: Update to 1.8.1.
...
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.8.1.
2016-10-26 09:28:11 +02:00
Ricardo Wurmus
b87b41a74d
gnu: r-shortread: Update to 1.32.0.
...
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.32.0.
2016-10-26 09:28:10 +02:00
Ricardo Wurmus
ae6899b683
gnu: r-gostats: Update to 2.40.0.
...
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.40.0.
2016-10-26 09:28:10 +02:00
Ricardo Wurmus
816599c1e7
gnu: r-category: Update to 2.40.0.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.40.0.
2016-10-26 09:28:10 +02:00
Ricardo Wurmus
558d02c361
gnu: r-gseabase: Update to 1.36.0.
...
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.36.0.
2016-10-26 09:28:09 +02:00
Ricardo Wurmus
700c780dcf
gnu: r-rbgl: Update to 1.50.0.
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* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.50.0.
2016-10-26 09:28:09 +02:00
Ricardo Wurmus
55cd914c3d
gnu: r-annotationforge: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.16.0.
[propagated-inputs]: Add r-rcurl.
2016-10-26 09:28:09 +02:00
Ricardo Wurmus
e1db8dd813
gnu: r-deseq2: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.14.0.
2016-10-26 09:28:08 +02:00
Ricardo Wurmus
1e66e71921
gnu: r-genefilter: Update to 1.56.0.
...
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.56.0.
2016-10-26 09:28:08 +02:00
Ricardo Wurmus
6faa2a48f0
gnu: r-geneplotter: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.52.0.
2016-10-26 09:28:08 +02:00
Ricardo Wurmus
9beba74f66
gnu: r-annotate: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.52.0.
2016-10-26 09:28:07 +02:00
Ricardo Wurmus
557a4b8e61
gnu: Add r-kernsmooth.
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* gnu/packages/statistics.scm (r-kernsmooth): New variable.
2016-10-26 09:28:07 +02:00
Ricardo Wurmus
f9875807e8
gnu: emacs-emms-player-mpv: Update to 0.0.10.
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* gnu/packages/emacs.scm (emacs-emms-player-mpv): Update to 0.0.10.
2016-10-26 09:28:07 +02:00
Leo Famulari
6c18c4f603
gnu: elfutils: Update to 0.167.
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* gnu/packages/elf.scm (elfutils): Update to 0.167.
2016-10-25 22:11:59 -04:00
Leo Famulari
3de764f7a7
gnu: gtk+-2: Update to 2.24.31 [fixes CVE-2013-7447].
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* gnu/packages/gtk.scm (gtk+-2): Update to 2.24.31.
2016-10-25 16:33:13 -04:00
Kei Kebreau
47a04fca99
gnu: mupdf: Fix CVE-2016-8674.
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* gnu/packages/patches/mupdf-CVE-2016-8674.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (mupdf): Use it.
2016-10-25 12:50:50 -04:00
Thomas Danckaert
4b12fe5cab
gnu: coda: Remove bundled libraries.
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* gnu/packages/maths.scm (coda): Remove bundled libraries.
[source]: Add patch and snippet to remove bundled zlib, pcre and expat.
[inputs]: Add system zlib, pcre and expat.
* gnu/packages/patches/coda-use-system-libs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-25 14:56:37 +02:00
Mark H Weaver
e9a19bde40
gnu: linux-libre@4.1: Update to 4.1.35.
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* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.35. Remove
patch.
* gnu/packages/patches/linux-libre-4.1-CVE-2016-5195.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-10-24 22:53:18 -04:00
Mark H Weaver
c4a667bfa5
gnu: Add missing module import to (gnu packages gl).
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This is a followup to commit f1267c872f
.
* gnu/packages/gl.scm: Import (gnu packages).
2016-10-24 22:45:38 -04:00
Mark H Weaver
f1267c872f
gnu: mesa: Fix 'wayland-egl-symbols-check' on MIPS.
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* gnu/packages/patches/mesa-wayland-egl-symbols-check-mips.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gl.scm (mesa)[source]: Add patch when building on MIPS.
2016-10-24 22:28:32 -04:00
Leo Famulari
19a65e7c8c
gnu: perl-eval-closure: Update to 0.14.
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* gnu/packages/perl.scm (perl-eval-closure): Update to 0.14.
2016-10-24 17:29:25 -04:00
Thomas Danckaert
d91025e3d0
gnu: Add coda.
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* gnu/packages/maths.scm (coda): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24 23:14:52 +02:00
Thomas Danckaert
d3c4f3bb00
gnu: Add hdf-eos2.
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* gnu/packages/maths.scm (hdf-eos2): New variable.
* gnu/packages/patches/hdf-eos2-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos2-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos2-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24 23:05:20 +02:00
Amirouche
3b5783fcd9
gnu: Add guile-bytestructures
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* gnu/packages/guile.scm (guile-bytestructures): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24 22:51:52 +02:00
Leo Famulari
4691428059
gnu: twolame: Make the test suite compatible with Perl 5.24.
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* gnu/packages/audio.scm (twolame)[source]: Add snippet to fix test.
2016-10-24 16:19:25 -04:00
Efraim Flashner
405be8dceb
gnu: efl: Update to 1.18.2.
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* gnu/packages/enlightenment.scm (efl): Update to 1.18.2.
2016-10-24 22:01:00 +03:00