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22882 Commits

Author SHA1 Message Date
Ben Woodcroft fd99d95b3f
gnu: bwa: Update to 0.7.15. 
* gnu/packages/bioinformatics.scm (bwa): Update to 0.7.15.
 2017-07-01 09:48:20 +10:00
Tobias Geerinckx-Rice 97d451540c
gnu: btrfs-progs: Update to 4.11.1. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.11.1.
 2017-07-01 01:23:41 +02:00
Tobias Geerinckx-Rice 0c7ce625b7
gnu: tor: Update to 0.3.0.9 [fixes CVE-2017-0377]. 
* gnu/packages/tor.scm (tor): Update to 0.3.0.9.
 2017-07-01 00:20:53 +02:00
Feng Shu f4ade9b6c8
gnu: Add emacs-exwm-x. 
* gnu/packages/emacs.scm (emacs-exwm-x): New variable.
 2017-06-30 23:30:31 +02:00
Feng Shu 58addd2b20
gnu: Add emacs-switch-window. 
* gnu/packages/emacs.scm (emacs-switch-window): New variable.
 2017-06-30 23:30:31 +02:00
Ludovic Courtès e3ddb1e832
gnu: guile-cairo: Switch to Guile 2.2. 
This patch adjusts dependent packages accordingly.

* gnu/packages/gtk.scm (guile-cairo)[inputs]: Switch to GUILE-2.2 and
GUILE-LIB.
(guile-rsvg)[inputs]: Likewise.
(guile-present)[inputs]: Likewise.
(guile-gnome)[inputs]: Likewise.
* gnu/packages/plotutils.scm (guile-charting)[inputs]: Switch go
GUILE-2.2.
 2017-06-30 23:20:34 +02:00
Ludovic Courtès ae5c6ef393
gnu: guile-gnome: Update to 2.16.5. 
* gnu/packages/gtk.scm (guile-gnome): Update to 2.16.5.
[arguments] <pre-configure>: Use @GUILE_EFFECTIVE_VERSION@ instead of
"2.0".
[properties]: New field.
 2017-06-30 23:20:34 +02:00
Ludovic Courtès 0fd8013fca
gnu: guile-rsvg: Update to commit 05c6a2fd. 
* gnu/packages/gtk.scm (guile-rsvg): Update to commit 05c6a2fd.
[source](url): Change to gitlab.com.
(snippet): Use @GUILE_EFFECTIVE_VERSION@ instead of "2.0".
* gnu/packages/patches/guile-rsvg-pkgconfig.patch: Use
"$GUILE_EFFECTIVE_VERSION" instead of "2.0".
 2017-06-30 23:20:34 +02:00
Ludovic Courtès 66b9183c4f
gnu: guile-lib: Switch to Guile 2.2. 
* gnu/packages/guile.scm (guile-lib)[inputs]: Replace GUILE-2.0 with
GUILE-2.2.
(guile2.0-lib): New variable.
(guile2.2-lib): Mark as deprecated.
* gnu/packages/guile.scm (guile-ics): Use GUILE2.0-LIB.
* gnu/packages/gtk.scm (guile-cairo, guile-rsvg)
(guile-present, guile-gnome): Likewise.
* gnu/packages/skribilo.scm (skribilo): Likewise.
 2017-06-30 23:20:33 +02:00
Ludovic Courtès 30f17d73d6
gnu: guile-lib: Update to 0.2.5.1. 
* gnu/packages/guile.scm (guile-lib): Update to 0.2.5.1.
 2017-06-30 23:20:33 +02:00
Leo Famulari f48a9d4a46
gnu: npth: Update to 1.5. 
* gnu/packages/gnupg.scm (npth): Update to 1.5.
 2017-06-30 16:54:05 -04:00
Leo Famulari 9570b01631
gnu: libreoffice: Update to 5.3.2.2. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.3.2.2.
 2017-06-30 16:11:45 -04:00
Ludovic Courtès 798b7678a0
gnu: hwloc: Add "lib" and "debug" outputs. 
* gnu/packages/mpi.scm (hwloc)[outputs]: New field.
[arguments]: Add 'avoid-circular-references' phase.
(openmpi)[inputs]: Use the "lib" output of HWLOC.
* gnu/packages/parallel.scm (slurm)[inputs]: Likewise.
 2017-06-30 18:44:41 +02:00
Ludovic Courtès 7eb9f31cd9
gnu: hwloc: Use /var as the localstatedir. 
* gnu/packages/mpi.scm (hwloc)[arguments]: Add #:configure-flags.
 2017-06-30 18:44:41 +02:00
Gregor Giesen 2973ebf504
gnu: Add mkvtoolnix. 
* gnu/packages/video.scm (mkvtoolnix): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-06-30 12:43:41 -04:00
Gregor Giesen 15f1d02aad
gnu: Add libmatroska. 
* gnu/packages/video.scm (libmatroska): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-06-30 12:43:41 -04:00
Gregor Giesen 5bc2d5798d
gnu: Add libebml. 
* gnu/packages/xml.scm (libebml): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-06-30 12:43:41 -04:00
Gregor Giesen bf7c369940
gnu: Add nlohmann-json-cpp. 
* gnu/packages/serialization.scm (nlohmann-json-cpp): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-06-30 12:43:40 -04:00
Leo Famulari ecb232bdfc
gnu: isc-dhcp: Update bundled bind to 9.9.10-P2 [fixes CVE-2017-{3142,3143}]. 
* gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.10-P2.
 2017-06-30 11:59:31 -04:00
Leo Famulari faa1369e3c
gnu: bind: Update to 9.11.1-P2 [fixes CVE-2017-{3142,3143}]. 
* gnu/packages/dns.scm (isc-bind): Update to 9.11.1-P2.
 2017-06-30 11:59:28 -04:00
Arun Isaac 0ac042324a
gnu: Add jo. 
* gnu/packages/web.scm (jo): New variable.
 2017-06-30 20:02:13 +05:30
Oleg Pykhalov c97979d629
gnu: Add emacs-org-edit-latex. 
* gnu/packages/emacs.scm (emacs-org-edit-latex): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-06-30 19:09:32 +05:30
Ricardo Wurmus 3a4d5df2b0
gnu: itpp: Use texlive-tiny and ghostscript. 
* gnu/packages/maths.scm (itpp)[native-inputs]: Replace texlive-minimal with
texlive-tiny; add ghostscript.
 2017-06-30 13:57:42 +02:00
Ricardo Wurmus 612a387fe7
gnu: gnuplot: Use texlive-tiny. 
* gnu/packages/maths.scm (gnuplot)[native-inputs]: Replace texlive-minimal
with texlive-tiny.
 2017-06-30 13:57:41 +02:00
Ricardo Wurmus a023ec6e4c
gnu: giac-xcas: Use texlive-tiny. 
* gnu/packages/algebra.scm (giac-xcas)[inputs]: Replace texlive-minimal with
texlive-tiny.
 2017-06-30 13:57:41 +02:00
Ricardo Wurmus a8b0948b7c
gnu: pari-gp: Use texlive-tiny. 
* gnu/packages/algebra.scm (pari-gp)[native-inputs]: Replace texlive-minimal
with texlive-tiny.
 2017-06-30 13:57:41 +02:00
Ricardo Wurmus 84889519bb
gnu: po4a: Use texlive-tiny. 
* gnu/packages/gettext.scm (po4a)[native-inputs]: Replace texlive-minimal with
texlive-tiny.
 2017-06-30 13:57:41 +02:00
Ludovic Courtès 87941d1df4
system: Use "@" to refer to the 'shadow' package. 
Reported by Mark H Weaver
at <https://lists.gnu.org/archive/html/guix-devel/2017-06/msg00349.html>.

* gnu/system.scm (%base-packages): Use '@' for shadow.  This fixes an
error on Guile 2.0 where 'shadow' alone resolves to the (gnu system
shadow) module.
 2017-06-30 11:27:30 +02:00
Mark H Weaver 588b22575d
gnu: linux-libre: Update to 4.11.8. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.11.8.
(%linux-libre-hash): Update hash.
 2017-06-30 00:13:36 -04:00
Mark H Weaver 426187d278
gnu: linux-libre@4.9: Update to 4.9.35. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.35.
 2017-06-30 00:12:55 -04:00
Mark H Weaver 5d7f9c156e
gnu: linux-libre@4.4: Update to 4.4.75. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.75.
 2017-06-30 00:12:16 -04:00
Mark H Weaver 5a1b5dccf0
gnu: linux-libre@4.1: Update to 4.1.42 [mitigates CVE-2017-1000364]. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.42.
 2017-06-30 00:11:10 -04:00
Ludovic Courtès 79bfa63829
maint: Disk image size is automatically guessed. 
* Makefile.am (GUIXSD_VM_IMAGE_SIZE): Remove.
(release): Remove --image-size argument from 'guix system disk-image'
command.
 2017-06-30 00:16:51 +02:00
Ludovic Courtès a2278922fe
vm: Use 'fold2' from (guix combinators). 
* gnu/build/vm.scm: Use (guix combinators).
(fold2): Remove.
 2017-06-30 00:16:51 +02:00
Ludovic Courtès a8ac4f081a
vm: Estimate the disk size by default. 
* gnu/build/vm.scm (estimated-partition-size): New procedure.
* gnu/system/vm.scm (expression->derivation-in-linux-vm):
Change #:disk-image-size default to 'guess.
[builder]: When DISK-IMAGE-SIZE is 'guess, use
'estimated-partition-size' and compute and estimate of the image size.
(qemu-image): Likewise.
* guix/build/store-copy.scm (file-size, closure-size): New procedures.
* guix/scripts/system.scm (%default-options): Change 'image-size' to
'guess.
* doc/guix.texi (Building the Installation Image): Remove '--image-size'
flag from example.
(Invoking guix system): Document the image size estimate.
 2017-06-30 00:16:50 +02:00
Ludovic Courtès a2cf57e79e
vm: Display the disk and partition sizes. 
* gnu/build/vm.scm (load-in-linux-vm): Add 'format' call when
MAKE-DISK-IMAGE? is true.
(initialize-partition-table): Show the size of the partitions being
created.
 2017-06-30 00:16:50 +02:00
Ludovic Courtès 6efb98ed3c
vm: Fix 'load-in-linux-vm' docstring. 
* gnu/build/vm.scm (load-in-linux-vm): Change default value of
  #:disk-image-size.  Update docstring to note that DISK-IMAGE-SIZE is
  in bytes.
 2017-06-30 00:16:50 +02:00
Ludovic Courtès 1d97fd8cb6
build: Remove check for broken (srfi srfi-37). 
This was for Guile < 2.0.9 and we've been requiring 2.0.9+ for some time
already.

* configure.ac: Remove 'GUIX_CHECK_SRFI_37' use and 'INSTALL_SRFI_37'
conditional.
* Makefile.am: Remove code in "if INSTALL_SRFI_37".
(EXTRA_DIST): Remove srfi/srfi-37.scm.in.
* srfi/srfi-37.scm.in: Remove.
* m4/guix.m4 (GUIX_CHECK_SRFI_37): Remove.
 2017-06-30 00:16:50 +02:00
Leo Famulari 95bbaa02aa
gnu: poppler: Fix CVE-2017-{9775,9776}. 
* gnu/packages/pdf.scm (poppler)[replacement]: New field.
(poppler-0.56.0): New variable.
(poppler-qt4, poppler-qt5): Use 'package/inherit'.
 2017-06-29 16:40:10 -04:00
Efraim Flashner 1b6d3b7a23
gnu: thermald: Add file-name for source. 
* gnu/packages/admin.scm (thermald)[source]: Add file-name field.
 2017-06-29 23:09:24 +03:00
Efraim Flashner 86ee76254b
gnu: thermald: Only build on i686 and x86_64. 
* gnu/packages/admin.scm (thermald)[supported-systems]: New field.
 2017-06-29 23:08:17 +03:00
Efraim Flashner ef2c7fb5da
gnu: libgcrypt: Add mitigation for CVE-2017-7526. 
* gnu/packages/gnupg.scm (libgcrypt)[replacment]: New field.
(libgcrypt-1.7.8): New variable.
(libgcrypt-1.5)[replacment]: New field.
 2017-06-29 21:04:33 +03:00
Jan Nieuwenhuizen 604e494dc0
gnu: mes: Update to 0.8. 
* gnu/packages/mes.scm (mes): Update to 0.8.
 2017-06-29 18:11:34 +02:00
Jan Nieuwenhuizen 9ae3fcb9e8
gnu: Add mescc-tools. 
* gnu/packages/mes.scm (mescc-tools): New variable.
 2017-06-29 18:09:42 +02:00
Ludovic Courtès c0f5eee4b2
system: Add 'shadow' to %BASE-PACKAGES. 
Suggested by Göktuğ Kayaalp <self@gkayaalp.com>.

* gnu/system.scm (%base-packages): Add SHADOW.
 2017-06-29 16:28:28 +02:00
Ricardo Wurmus b8d3a000ef
gnu: libxfce4ui: Do not propagate gtk+-2. 
Propagation of both gtk+ and gtk+-2 causes a conflict to be detected,
preventing the installation of xfce.

* gnu/packages/xfce.scm (libxfce4ui)[propagated-inputs]: Move "gtk+-2"...
[inputs]: ...to here.
(garcon)[inputs]: Add "gtk+-2".
(xfce4-appfinder)[inputs]: Add "gtk+-2".
(xfce4-power-manager)[inputs]: Add "gtk+-2".
(ristretto)[inputs]: Add "gtk+-2".
 2017-06-29 16:06:14 +02:00
Ricardo Wurmus c860d6ef23
gnu: xfce: Build union instead of propagating inputs. 
* gnu/packages/xfce.scm (xfce)[propagated-inputs]: Move all...
[inputs]: ...here.
[arguments]: Build a union.
 2017-06-29 16:06:14 +02:00
Alex Vong d34970ee2b
gnu: clojure: Update "tools-reader-src" to 1.0.0. 
* gnu/packages/java.scm (clojure)[inputs]: Update "tools-reader-src" to
1.0.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-06-29 15:21:18 +02:00
Dave Love a73e7dd3b0
gnu: Add procenv. 
* gnu/packages/linux.scm (procenv): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-06-29 15:21:18 +02:00
Jelle Licht b786661309
gnu: ansible: Apply experimental patch to deal with wrapping of ansible script. 
See <http://lists.gnu.org/archive/html/bug-guix/2017-05/msg00015.html> for the
rationale.

* gnu/packages/patches/ansible-wrap-program-hack.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (ansible)[source]: Use it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-06-29 15:21:18 +02:00