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13231 Commits

Author SHA1 Message Date
Ludovic Courtès 8aa5e15ebd
download: Update CPAN mirrors. 
* guix/download.scm (%mirrors)[cpan]: Remove enstimac.fr, which seems
dead; add ibcp.fr.
 2016-07-02 16:24:35 +02:00
Alex Sassmannshausen abf18075ca
gnu: Add perl-ipc-system-simple. 
* gnu/packages/perl.scm (perl-ipc-system-simple): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-02 16:24:35 +02:00
Alex Sassmannshausen 2dca669e45
gnu: Add perl-guard. 
* gnu/packages/perl.scm (perl-guard): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-02 16:24:35 +02:00
Alex Sassmannshausen 7640c62dd2
gnu: Add perl-file-zglob. 
* gnu/packages/perl.scm (perl-file-zglob): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-02 16:24:35 +02:00
Alex Sassmannshausen d209710bd4
gnu: Add perl-config-ini. 
* gnu/packages/perl.scm (perl-config-ini): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-02 16:24:35 +02:00
Alex Sassmannshausen 4ca06e4c87
gnu: Add perl-mixin-linewise. 
* gnu/packages/perl.scm (perl-mixin-linewise): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-02 16:24:35 +02:00
Alex Sassmannshausen 77ff12c987
gnu: Add perl-perlio-utf8-strict. 
* gnu/packages/perl.scm (perl-perlio-utf8_strict): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-02 16:24:35 +02:00
Alex Sassmannshausen a65d0fdb7c
gnu: Add perl-test-class-most. 
* gnu/packages/perl.scm (perl-test-class-most): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-02 16:24:35 +02:00
Alex Sassmannshausen d2d6cd67c2
gnu: Add perl-test-class. 
* gnu/packages/perl.scm (perl-test-class): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-02 16:24:35 +02:00
Alex Sassmannshausen e957060ccb
gnu: perl-text-diff: Update perl-text-diff. 
* gnu/packages/perl.scm (perl-text-diff): Correct URL, update to 1.44.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-02 16:24:35 +02:00
John J. Foerch 6d3ef286b1
gnu: Add midicsv. 
* gnu/packages/music.scm (midicsv): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-02 16:24:35 +02:00
Leo Famulari 9996ab16e6
gnu: gimp: Fix CVE-2016-4994. 
* gnu/packages/patches/gimp-CVE-2016-4994.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gimp.scm (gimp): Use it.
 2016-07-02 10:13:55 -04:00
Ludovic Courtès a4bbf41b25
tests: install: Adjust to new 'marionette-service-type' interface. 
This is a followup to 037f9e07cd.
Reported by Mark H Weaver.

* gnu/tests/install.scm (%minimal-os): Pass a <marionette-configuration>
object as the value for the MARIONETTE-SERVICE-TYPE.
 2016-07-02 14:59:30 +02:00
Leo Famulari 328ae34112
gnu: python-sphinx-repoze-autointerface: Update to 0.8. 
* gnu/packages/python.scm (python-sphinx-repoze-autointerface,
python2-sphinx-repoze-autointerface): Update to 0.8.
 2016-07-01 20:55:53 -04:00
Leo Famulari 07abcc2e73
gnu: imagemagick: Update to 6.9.5-0. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.5-0.
 2016-07-01 20:27:09 -04:00
Leo Famulari 9c509ca9a6
gnu: python-cryptography, python-cryptography-vectors: Update to 1.3.4. 
* gnu/packages/python.scm (python-cryptography, python2-cryptography):
Update to 1.3.4.
[source]: Use pypi-uri.
(python-cryptography-vectors, python2-cryptography-vectors): Update to 1.3.4.
[source]: Use pypi-uri.
 2016-07-01 20:23:07 -04:00
Efraim Flashner d5da7ee418
gnu: rofi: Update to 1.1.0. 
* gnu/packages/xdisorg.scm (rofi): Update to 1.1.0.
 2016-07-01 17:30:16 +03:00
Efraim Flashner 5bf834225a
gnu: libreoffice: Update to 5.1.4.2 [fixes CVE-2016-4324]. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.1.4.2.
[native-inputs]: Switch python to python-wrapper.
[arguments]: Add '--without-doxygen' and '--disable-gtk3'.
 2016-07-01 15:53:08 +03:00
Efraim Flashner 2638ec61e0
gnu: orcus: Update to 0.9.2. 
* gnu/packages/libreoffice.scm (orcus): Update to 0.9.2.
 2016-07-01 15:51:32 +03:00
Ben Woodcroft 71830f0e49
gnu: vsearch: Update to 2.0.1. 
*  gnu/packages/bioinformatics.scm (vsearch): Update to 2.0.1.
 2016-07-01 09:01:28 +10:00
Ben Woodcroft c7f04517a6
gnu: Add r-glmnet. 
* gnu/packages/statistics.scm (r-glmnet): New variable.
 2016-07-01 09:01:20 +10:00
Efraim Flashner 84d08af653
gnu: busybox: Use 'modify-phases'. 
* gnu/packages/busybox.scm (busybox)[arguments]: Use 'modify-phases'.
 2016-06-30 19:11:45 +03:00
Efraim Flashner 2e5505e5ea
gnu: busybox: Update to 1.25.0. 
* gnu/packages/busybox.scm (busybox): Update to 1.25.0.
[native-inputs]: Add which.
 2016-06-30 19:11:27 +03:00
Efraim Flashner 5fc4df0cb5
gnu: owncloud-client: Remove some bundled libs. 
* gnu/packages/owncloud.scm (owncloud-client)[source]: Add a snippet
removing some of the 3rd party projects.
 2016-06-30 10:56:57 +03:00
Efraim Flashner 9b1c1ea129
gnu: owncloud-client: Update to 2.2.2. 
* gnu/packages/owncloud.scm (owncloud-client): Update to 2.2.2.
 2016-06-30 09:55:18 +03:00
Danny Milosavljevic f4155188c3
gnu: Add python-prompt-toolkit. 
* gnu/packages/python.scm (python-prompt-toolkit, python2-prompt-toolkit):
New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-06-29 22:31:05 -04:00
Leo Famulari e4875826d8
gnu: python-wcwidth: Add missing 'properties' field. 
This is a followup to commit a44fd439dc.

* gnu/packages/python.scm (python-wcwidth)[properties]: New field.
 2016-06-29 22:25:44 -04:00
Ludovic Courtès 468e0b18d1
gnu: ceres-solver: Propagate GLOG. 
* gnu/packages/maths.scm (ceres)[inputs]: Move GLOG to...
[propagated-inputs]: ... here.  New field.
 2016-06-29 16:08:46 +02:00
Jan Nieuwenhuizen ad85791265
gnu: linux-initrd: Support NVMe devices. 
* gnu/system/linux-initrd.scm (base-initrd): Add nvme to linux-modules.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-29 16:08:46 +02:00
David Thompson 242ad41c01
download: Use basic authentication when userinfo is present in URI. 
* guix/download.scm (url-fetch): Include (guix base64) module on the
  build-side.
* guix/build/download.scm (http-fetch): Add "Authorization" header when
  userinfo is present in the URI.
 2016-06-29 08:51:41 -04:00
Ben Woodcroft 8dec2229a2
gnu: blast+: Update to 2.4.0. 
* gnu/packages/bioinformatics.scm (blast+): Update to 2.4.0.
 2016-06-29 22:42:47 +10:00
Ludovic Courtès bc3a2e3503
gnu: ceres-solver: Depend on glog. 
* gnu/packages/maths.scm (ceres)[arguments]: Remove -DMINIGLOG=ON.
[inputs]: Add GLOG.
 2016-06-29 12:01:05 +02:00
Ludovic Courtès 53d159f843
gnu: Add glog. 
* gnu/packages/logging.scm (glog): New variable.
 2016-06-29 11:13:03 +02:00
Ludovic Courtès 2de091f0c8
gnu: node: Make sure 'npm' remains a symlink after 'patch-shebangs'. 
Fixes <http://bugs.gnu.org/23744>.
Reported by Jovany Leandro G.C <bit4bit@riseup.net>
and Jelle Licht <jlicht@fsfe.org>.

* gnu/packages/node.scm (node)[arguments]: Replace 'patch-shebangs'
phase.
 2016-06-29 10:06:18 +02:00
Ludovic Courtès c2c36f5fab
gnu: openexr: Install 'ImfStdIO.h'. 
* gnu/packages/graphics.scm (openexr)[source](snippet): Modify
IlmImf/Makefile.in so that it installs 'ImfStdIO.h'.
 2016-06-29 10:06:18 +02:00
Ricardo Wurmus b0069a6777
gnu: avrdude: Use libusb-compat. 
* gnu/packages/patches/avrdude-fix-libusb.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/flashing-tools.scm (avrdude)[source]: Remove patch.
[inputs]: Replace "libusb" with "libusb-compat".
 2016-06-29 07:15:33 +02:00
Ben Woodcroft 3bce0f14b2
gnu: star: Update to 2.5.2a. 
* gnu/packages/bioinformatics.scm (star): Update to 2.5.2a.
 2016-06-29 10:14:22 +10:00
Ben Woodcroft 6c737963f6
gnu: htslib: Update to 1.3.1. 
* gnu/packages/bioinformatics.scm (htslib): Update to 1.3.1.
 2016-06-29 10:14:22 +10:00
Ricardo Wurmus ec9466388e
gnu: Add SEEK. 
* gnu/packages/bioinformatics.scm (seek): New variable.
 2016-06-28 22:49:05 +02:00
Ben Woodcroft d6e374a0d9
gnu: mafft: Update to 7.299. 
* gnu/packages/bioinformatics.scm (mafft): Update to 7.299.
 2016-06-28 21:42:15 +10:00
Efraim Flashner 48d4ce6ea3
Revert "gnu: qtbase: Don't propagate mesa." 
This reverts commit 763a8e6e23.
 2016-06-28 14:33:37 +03:00
Ben Woodcroft 45469ebe52
gnu: metabat: Update to 0.26.3. 
* gnu/packages/bioinformatics.scm (metabat): Update to 0.26.3.
[arguments]: Update include and linking paths accordingly.
 2016-06-28 21:28:06 +10:00
Ben Woodcroft af45244e36
gnu: diamond: Update to 0.8.9. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.9.
 2016-06-28 19:31:25 +10:00
Ricardo Wurmus 05e9f30f1e
gnu: r: Add pango to inputs. 
* gnu/packages/statistics.scm (r)[inputs]: Remove cairo, add pango.
 2016-06-28 09:36:00 +02:00
Ludovic Courtès d2fa61bc35
tests: Add Avahi and NSS-mDNS test. 
* gnu/tests/base.scm (%avahi-os): New variable.
(run-nss-mdns-test): New procedure.
(%test-nss-mdns): New variable.
 2016-06-27 21:41:38 +02:00
Ludovic Courtès c8695f325d
services: avahi: Add #:debug? parameter. 
* gnu/services/avahi.scm (<avahi-configuration>)[debug?]: New field.
(avahi-shepherd-service): Honor it.
(avahi-service): Add #:debug? and honor it.
* doc/guix.texi (Networking Services): Adjust accordingly.
 2016-06-27 21:41:38 +02:00
Ludovic Courtès 194ccecf77
services: avahi: Pass --daemonize and check for the PID file. 
This makes sure the service's 'start' finishes when avahi-daemon is
ready to process requests.

* gnu/services/avahi.scm (avahi-shepherd-service): Use --daemonize
instead of --syslog and add #:pid-file.
 2016-06-27 21:41:38 +02:00
Ludovic Courtès 037f9e07cd
tests: 'marionette-service-type' nows takes a <marionette-configuration>. 
* gnu/tests.scm (<marionette-configuration>): New record type.
(marionette-shepherd-service): Argument now is a <marionette-configuration>.
(marionette-operating-system): Adjust accordingly.  Add #:requirements
parameter and honor it.
 2016-06-27 21:41:38 +02:00
Ludovic Courtès 858d372c98
tests: base: Add host name resolution tests. 
* gnu/tests/base.scm (run-basic-test)["host name resolution",
"host not found"]: New tests.
 2016-06-27 21:41:38 +02:00
Ludovic Courtès 9009538d84
services: Export more service types. 
* gnu/services/base.scm (syslog-service-type): Export.
(urandom-seed-service-type): Export.
 2016-06-27 21:41:38 +02:00