0a1b447e2b
gnu: r-rprojroot: Update to 1.3-1.
...
* gnu/packages/statistics.scm (r-rprojroot): Update to 1.3-1.
2017-12-19 20:35:06 +01:00
102a271870
gnu: r-rcpparmadillo: Update to 0.8.300.1.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.300.1.0.
2017-12-19 20:35:06 +01:00
0300cacae1
gnu: r-plotrix: Update to 3.7.
...
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7.
2017-12-19 20:35:06 +01:00
004e108aad
gnu: r-git2r: Update to 0.20.0.
...
* gnu/packages/statistics.scm (r-git2r): Update to 0.20.0.
2017-12-19 20:35:06 +01:00
069e3b5c09
gnu: r-backports: Update to 1.1.2.
...
* gnu/packages/statistics.scm (r-backports): Update to 1.1.2.
2017-12-19 20:35:05 +01:00
1028f9ef11
gnu: r-yaml: Update to 2.1.16.
...
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.16.
2017-12-19 20:35:05 +01:00
de3fd9253f
gnu: r-reshape2: Update to 1.4.3.
...
* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.3.
2017-12-19 20:35:05 +01:00
d0c1a402db
gnu: r-digest: Update to 0.6.13.
...
* gnu/packages/statistics.scm (r-digest): Update to 0.6.13.
2017-12-19 20:35:05 +01:00
2960f9658f
gnu: r-vcd: Update to 1.4-4.
...
* gnu/packages/cran.scm (r-vcd): Update to 1.4-4.
2017-12-19 20:35:05 +01:00
f46a74e9f0
gnu: r-proxy: Update to 0.4-20.
...
* gnu/packages/cran.scm (r-proxy): Update to 0.4-20.
2017-12-19 20:35:04 +01:00
b9e8a5c594
gnu: r-biomart: Update to 2.34.1.
...
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.34.1.
[propagated-inputs]: Add r-httr.
2017-12-19 20:35:04 +01:00
11e42209a8
gnu: r-gviz: Update to 1.22.2.
...
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.22.2.
2017-12-19 20:35:04 +01:00
2ccd850192
gnu: r-gqtlstats: Update to 1.10.1.
...
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.10.1.
2017-12-19 20:35:04 +01:00
28d25d037e
gnu: r-rtracklayer: Update to 1.38.2.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.38.2.
2017-12-19 20:35:04 +01:00
d41f678420
gnu: r-limma: Update to 3.34.4.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.4.
2017-12-19 20:35:03 +01:00
ab0dd8ac10
gnu: r-edger: Update to 3.20.2.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.2.
2017-12-19 20:35:03 +01:00
7665fb39f5
gnu: r-biocstyle: Update to 2.6.1.
...
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.6.1.
2017-12-19 20:35:03 +01:00
756ac7254c
gnu: r-dexseq: Update to 1.24.2.
...
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.2.
2017-12-19 20:35:03 +01:00
8d11ef4470
gnu: r-vegan: Update to 2.4-5.
...
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-5.
2017-12-19 20:35:02 +01:00
68f1869cfc
gnu: xfce4-session: Disable (duplicate) Gtk+ icon cache generation.
...
* gnu/packages/xfce.scm (xfce4-session)[arguments]: Add make-flags to disable
Gtk+ icon cache generation.
2017-12-19 18:11:56 +01:00
9a56cf2b5b
services: urandom-seed: Try using a HWRNG to seed the Linux CRNG at boot.
...
* gnu/services/base.scm (urandom-seed-shepherd-service): Try to read from
'/dev/hwrng' at boot, as a supplement to any saved random seed.
* doc/guix.texi (Base Services): Document the new feature.
2017-12-19 11:31:24 -05:00
a8db968fa4
gnu: wxmaxima: Update to 17.10.1.
...
* gnu/packages/maths.scm (wxmaxima): Update to 17.10.1.
2017-12-19 11:26:16 -05:00
7a070f020b
gnu: Add quakespasm.
...
* gnu/packages/games.scm (quakespasm): New variable.
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2017-12-19 10:21:14 -05:00
0464dc1c1e
gnu: gajim: Update to 0.16.9.
...
* gnu/packages/messaging.scm (gajim): Update to 0.16.9.
2017-12-19 13:17:17 +01:00
f3b985fa61
gnu: python-nbxmpp: Update to 0.6.1.
...
* gnu/packages/messaging.scm (python-nbxmpp): Update to 0.6.1.
2017-12-19 13:17:16 +01:00
21bc352664
gnu: dino: Update to 0.0-3.f25fadde2.
...
* gnu/packages/messaging.scm (dino): Update to 0.0-3.f25fadde2.
2017-12-19 13:16:53 +01:00
79b43bc3a1
gnu: pcsc-lite: Update to 1.8.23.
...
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.23.
[arguments]: Disable libsystemd check.
2017-12-19 13:16:42 +01:00
b28e05d45e
gnu: antiword: Fix broken embedded directory name.
...
* gnu/packages/textutils.scm (antiword)[arguments]: Replace "configure" phase
to substitute reference to "/usr/share/antiword" with the actual directory in
the store.
2017-12-19 13:16:36 +01:00
fb6ca493f1
gnu: Update gwl to 0.1.1.
...
* gnu/packages/package-management.scm (gwl): Update to 0.1.1.
2017-12-19 12:27:43 +01:00
ba1ba9fcbd
gnu: emulation-station: Add missing file-name field.
...
* gnu/packages/games.scm (emulation-station)[source]: Add missing
file-name field.
2017-12-19 12:19:04 +02:00
28fc96cb1e
gnu: Update r-cowplot to 0.9.2.
...
* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.2.
2017-12-19 10:47:19 +01:00
a1ac7bf361
tests: Adjust php-fpm test to new nginx API.
...
Fixes <https://bugs.gnu.org/29769 >.
Reported by Mark H Weaver <mhw@netris.org>.
This is a followup to 8b223ceac4
2017-12-19 09:53:56 +01:00
4a408d847e
gnu: mpd: Update to 0.20.13.
...
* gnu/packages/mpd.scm (mpd): Update to 0.20.13.
2017-12-19 02:28:06 -05:00
4fad6598c6
gnu: keepassxc: Update to 2.2.4.
...
* gnu/packages/password-utils.scm (keepassxc): Update to 2.2.4.
2017-12-19 01:18:24 -05:00
4498cbd7ad
gnu: GnuPG pinentry: Update to 1.1.0.
...
* gnu/packages/gnupg.scm (pinentry-tty, pinentry-gtk2, pinentry-gnome3,
pinentry-qt): Update to 1.1.0.
2017-12-18 23:25:20 -05:00
7a6a08c945
gnu: linux-libre: Update to 4.14.7.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.7.
(%linux-libre-hash): Update hash.
2017-12-18 19:52:02 -05:00
48e1f44415
gnu: linux-libre@4.9: Update to 4.9.70.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.70.
2017-12-18 19:51:22 -05:00
86300e61b9
gnu: linux-libre@4.4: Update to 4.4.106.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.106.
2017-12-18 19:50:39 -05:00
98bd11cfe7
gnu: termite: Update to 13.
...
* gnu/packages/terminals.scm (termite): Update to 13.
2017-12-19 01:37:22 +01:00
972fa87039
gnu: pcsc-lite: Update to 1.8.23.
...
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.23.
[arguments]<#:configure-flags>: Add "--disable-libsystemd".
[license]: Adjust to removed sd-daemon files.
2017-12-19 01:30:14 +01:00
937790df9d
gnu: qemu: Update to 2.10.2.
...
* gnu/packages/patches/qemu-CVE-2017-15118.patch,
gnu/packages/patches/qemu-CVE-2017-15119.patch,
gnu/packages/patches/qemu-CVE-2017-15268.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/virtualization.scm (qemu): Update to 2.10.2.
[source](patches): Remove obsolete.
2017-12-19 01:15:09 +01:00
2ea3333504
gnu: libjpeg-turbo: Update to 1.5.3.
...
* gnu/packages/image.scm (libjpeg-turbo): Update to 1.5.3.
2017-12-18 23:25:20 +01:00
7bd9af7376
gnu: libsodium: Update to 1.0.16.
...
* gnu/packages/crypto.scm (libsodium): Update to 1.0.16.
2017-12-18 23:25:20 +01:00
8e9b3c6647
gnu: expect: Update to 5.45.3.
...
* gnu/packages/tcl.scm (expect): Update to 5.45.3.
2017-12-18 23:25:20 +01:00
63dc763816
gnu: deutex: Update to 5.1.0.
...
* gnu/packages/games.scm (deutex): Update to 5.1.0.
2017-12-18 17:19:58 -05:00
147d42fc03
gnu: emacspeak: Update to 47.0.
...
* gnu/packages/emacs.scm (emacspeak): Update to 47.0.
[source]: Remove snippet.
[arguments]: Set SHELL environment variable.
2017-12-18 16:50:45 -05:00
91675d5082
gnu: rsync: Patch CVE-2017-{16548,17433,17434}.
...
* gnu/packages/rsync.scm (rsync)[source]: Add patches.
[properties]: Mark CVE-2017-15994 as not relevant.
* gnu/packages/patches/rsync-CVE-2017-16548.patch,
gnu/packages/patches/rsync-CVE-2017-17433.patch,
gnu/packages/patches/rsync-CVE-2017-17433-fix-tests.patch,
gnu/packages/patches/rsync-CVE-2017-17434-pt1.patch,
gnu/packages/patches/rsync-CVE-2017-17434-pt2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2017-12-18 22:53:46 +02:00
b50a9cc008
gnu: psm: Update home page URL.
...
* gnu/packages/linux.scm (psm)[home-page]: Update.
[source](uri): Use it.
2017-12-18 17:52:58 +01:00
4e9dfe399b
gnu: Fix ambiguous 'zip' reference.
...
* gnu/packages/photo.scm: Hide 'zip' from (srfi srfi-1).
2017-12-18 17:52:58 +01:00
9f1e39d1fc
system: examples: Add a template for BeagleBone Black.
...
* gnu/system/examples/beaglebone-black.tmpl: New file.
* Makefile.am (EXAMPLES): Add it.
* gnu/system/install.scm (/etc/configuration-files): Add it.
2017-12-18 15:28:14 +01:00
af8c547d33
gnu: claws-mail: Update to 3.16.0.
...
* gnu/packages/mail.scm (claws-mail): Update to 3.16.0.
2017-12-18 15:22:08 +01:00
b05e8ee120
services: nginx: Allow to add raw content to the server blocks.
...
* doc/guix.texi (Web Services): Document 'raw-content'.
* gnu/services/web.scm (<nginx-server-configuration>)[raw-content]: New field.
(emit-nginx-server-config): Add it.
2017-12-18 12:03:14 +01:00
8b223ceac4
services: nginx: Replace 'http-port' and 'https-port' with 'listen'.
...
* doc/guix.texi (Web Services, Version Control Services): Update accordingly.
* gnu/services/certbot.scm (certbot-nginx-server-configurations): Likewise.
* gnu/services/version-control.scm (%cgit-configuration-nginx): Likewise.
* gnu/services/web.scm (<nginx-server-configuration>,
emit-nginx-server-config): Likewise.
* gnu/tests/version-control.scm (%cgit-configuration-nginx,
%git-nginx-configuration): Likewise.
* gnu/tests/web.scm (%nginx-servers, %php-fpm-nginx-server-blocks): Likewise.
2017-12-18 12:03:14 +01:00
f1a2b1cb20
gnu: r-seurat: Update to 2.1.0.
...
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.1.0.
[propagated-inputs]: Add r-diffusionmap, r-dtw, r-ggjoy, r-hmisc, r-ica,
r-mass, r-matrix, r-nmf, r-plotly, r-sdmtools, r-tidyr; remove r-plyr,
r-rcppeigen, r-fastica.
2017-12-18 12:01:35 +01:00
fff9b88439
gnu: Add r-diffusionmap.
...
* gnu/packages/graph.scm (r-diffusionmap): New variable.
2017-12-18 12:01:35 +01:00
007f6d9885
gnu: Add r-ggjoy.
...
* gnu/packages/cran.scm (r-ggjoy): New variable.
2017-12-18 12:01:34 +01:00
f90018e568
gnu: Add r-ggridges.
...
* gnu/packages/cran.scm (r-ggridges): New variable.
2017-12-18 12:01:34 +01:00
ae3f207951
gnu: Add r-scatterplot3d.
...
* gnu/packages/cran.scm (r-scatterplot3d): New variable.
2017-12-18 12:01:34 +01:00
15ef07f00e
gnu: Add r-sdmtools.
...
* gnu/packages/cran.scm (r-sdmtools): New variable.
2017-12-18 12:01:34 +01:00
bf025ff6f2
gnu: Add r-dtw.
...
* gnu/packages/cran.scm (r-dtw): New variable.
2017-12-18 12:01:34 +01:00
ae16426007
gnu: Add r-ica.
...
* gnu/packages/cran.scm (r-ica): New variable.
2017-12-18 12:01:34 +01:00
8271b8d22a
gnu: r-seurat: Fix ModularityOptimizer.jar.
...
* gnu/packages/bioinformatics.scm (r-seurat)[arguments]: Include Main-Class
attribute in manifest.
2017-12-18 12:01:34 +01:00
b6313997ad
gnu: qmidiarp: Update to 0.6.5.
...
* gnu/packages/music.scm (qmidiarp): Update to 0.6.5.
2017-12-18 12:01:33 +01:00
cf31d5e114
gnu: Add noise-repellent.
...
* gnu/packages/audio.scm (noise-repellent): New variable.
2017-12-18 12:01:33 +01:00
13edf1b9ea
gnu: Add aj-snapshot.
...
* gnu/packages/music.scm (aj-snapshot): New variable.
2017-12-18 12:01:33 +01:00
39b335849b
gnu: Add jack-capture.
...
* gnu/packages/music.scm (jack-capture): New variable.
2017-12-18 12:01:33 +01:00
4071379357
gnu: Add qjackrcd.
...
* gnu/packages/audio.scm (qjackrcd): New variable.
2017-12-18 12:01:33 +01:00
92b36e3aa5
gnu: Add whysynth.
...
* gnu/packages/music.scm (whysynth): New variable.
2017-12-18 12:01:33 +01:00
f7ce213404
gnu: Add sonivox-eas.
...
* gnu/packages/music.scm (sonivox-eas): New variable.
2017-12-18 12:01:32 +01:00
2ca712bdba
vm: Pass the host's /dev/urandom to the guest at /dev/hwrng.
...
* gnu/build/vm.scm (load-in-linux-vm): Use QEMU's virtio-rng-pci.
* gnu/system/vm.scm (common-qemu-options): Likewise.
2017-12-18 00:39:40 -05:00
87dbb634a9
gnu: openssl: Update replacement to 1.0.2n [fixes CVE-2017-{3737,3738}].
...
* gnu/packages/tls.scm (openssl)[replacement]: Use openssl-1.0.2n.
(openssl-1.0.2m): Replace with ...
(openssl-1.0.2n): ... this updated version. Update comment.
2017-12-17 21:10:45 -05:00
98cf8ca89a
gnu: Add mod-wsgi.
...
* gnu/packages/web.scm (mod-wsgi): New variable.
2017-12-17 20:46:46 +00:00
e0d96774dd
gnu: system: vm: Use loose cache for 9p file system.
...
This improves the performance of the shared store for operations involving
lots of files, e.g. searching through the store.
* gnu/system/vm.scm (mapping->file-system): Add cache=loose to options.
2017-12-17 20:46:40 +00:00
56d924a59b
gnu: grammalecte: Fix 'license' field.
...
* gnu/packages/dictionaries.scm (grammalecte)[license]: Change name to
'gpl3+'.
2017-12-17 21:38:03 +01:00
e8a051ee7c
services: certbot: Fix certbot renewal job.
...
Quote the list of hosts, to avoid generating a broken job definition.
* gnu/services/certbot.scm (certbot-renewal-jobs): Quote the hosts when
passing them in to the job gexp.
2017-12-17 20:37:12 +00:00
ad564a06ad
gnu: Add grammalecte.
...
* gnu/packages/dictionaries.scm (grammalecte): New variable.
2017-12-17 18:58:17 +01:00
217f704c6a
gnu: gourmet: Fix runtime failure and enhance plugin.
...
Fixes <https://bugs.gnu.org/29227 >.
Reported by Caleb Herbert <csh@bluehome.net>.
* gnu/packages/nutrition.scm (gourmet)[inputs]: Add python-lxml.
[arguments]: Custom install phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-17 17:22:31 +01:00
f845793237
gnu: pinentry-tty: Add meta-data for 'guix refresh'.
...
* gnu/packages/gnupg.scm (pinentry-tty)[properties]: New field.
2017-12-17 16:49:45 +01:00
e25ca462e5
services: cleanup: Remove "/run/udev/watch.old" directory.
...
* gnu/services.scm (cleanup-gexp): Remove "/run/udev/watch.old" directory.
2017-12-17 08:32:37 +01:00
bc3d607748
gnu: global: Update to 6.6.1 [fixes CVE-2017-17531].
...
* gnu/packages/code.scm (global): Update to 6.6.1.
2017-12-17 08:51:26 +02:00
bef02e9e1c
gnu: python-dulwich: Update to 0.18.6 [fixes CVE-2017-16228].
...
* gnu/packages/python.scm (python-dulwich, python2-dulwich): Update to 0.18.6.
2017-12-16 17:04:05 -05:00
1475d5c6c7
gnu: krita: Enhance krita.
...
* gnu/packages/kde.scm (krita)[inputs]: Add libjpeg-turbo, ilmbase and openexr.
[native-inputs]: Add vc.
[arguments]: Set path to headers for ilmbase.
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2017-12-16 16:50:31 -05:00
e908a5af89
gnu: borg: Fix a data loss bug.
...
See <https://github.com/borgbackup/borg/issues/3444 > for more information.
* gnu/packages/patches/borg-fix-archive-corruption-bug.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/backup.scm (borg)[source]: Use it.
2017-12-16 16:33:32 -05:00
ca6182a1be
gnu: guix: Update snapshot to 02345c.
...
* gnu/packages/package-management.scm (guix): Update to 02345c.
2017-12-16 18:43:49 +01:00
25504aaff8
gnu: lookingglass: Limit to Intel compatable systems.
...
* gnu/packages/virtualization.scm (lookingglass)[supported-systems]: New
field.
2017-12-16 19:19:15 +02:00
d9f65bd32d
gnu: gx-saturator-lv2: Update to 0-3.605330f43.
...
* gnu/packages/music.scm (gx-saturator-lv2): Update to 0-3.605330f43.
2017-12-16 18:06:08 +01:00
d921a1f4dd
gnu: gx-slow-gear-lv2: Update to 0-3.5d37e775b.
...
* gnu/packages/music.scm (gx-slow-gear-lv2): Update to 0-3.5d37e775b.
2017-12-16 18:06:08 +01:00
1b74b126fe
gnu: gx-vbass-preamp-lv2: Update to 0-2.eb999b0ca.
...
* gnu/packages/music.scm (gx-vbass-preamp-lv2): Update to 0-2.eb999b0ca.
[inputs]: Add gtk+-2.
[native-inputs]: Add pkg-config.
(gx-overdriver-lv2, gx-tone-mender-lv2, gx-push-pull-lv2,
gx-switchless-wah-lv2): Inherit from gx-guvnor-lv2.
2017-12-16 18:06:08 +01:00
67df7164e0
gnu: Add libvdpau-va-gl.
...
* gnu/packages/video.scm (libvdpau-va-gl): New variable.
* gnu/packages/patches/libvdpau-va-gl-unbundle.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-12-16 18:58:50 +02:00
02345c963e
gnu: Add knights.
...
* gnu/packages/games.scm (knights): New variable.
2017-12-16 10:23:05 +01:00
341bddb315
gnu: axoloti-runtime: Update ChibiOS URL.
...
* gnu/packages/axoloti.scm (axoloti-runtime)[inputs]: Update URL for ChibiOS
sources.
2017-12-16 09:01:57 +01:00
fe049d2180
gnu: mod-utilities: Update to 0-2.80ea3ea9f.
...
* gnu/packages/music.scm (mod-utilities): Update to 0-2.80ea3ea9f.
[arguments]: Set PREFIX and CC.
2017-12-16 09:01:57 +01:00
0febd67387
gnu: gx-vintage-fuzz-master-lv2: Fetch sources from git.
...
* gnu/packages/music.scm (gx-vintage-fuzz-master-lv2)[source]: Fetch from git.
2017-12-16 09:01:57 +01:00
5057535f29
gnu: gx-super-fuzz-lv2: Fetch sources from git.
...
* gnu/packages/music.scm (gx-super-fuzz-lv2)[source]: Fetch from git.
2017-12-16 09:01:56 +01:00
d42c66132e
gnu: gx-voodoo-fuzz-lv2: Fetch sources from git
...
* gnu/packages/music.scm (gx-voodoo-fuzz-lv2)[source]: Fetch from git.
2017-12-16 09:01:56 +01:00
37519239ac
gnu: gx-hyperion-lv2: Fetch sources from git.
...
* gnu/packages/music.scm (gx-hyperion-lv2)[source]: Fetch from git.
2017-12-16 09:01:56 +01:00
48b95a193c
gnu: gx-suppa-tone-bender-lv2: Fetch sources from git.
...
* gnu/packages/music.scm (gx-suppa-tone-bender-lv2)[source]: Fetch from git.
2017-12-16 09:01:56 +01:00
45ab28a713
gnu: gx-vbass-preamp-lv2: Inherit phases from gx-guvnor-lv2.
...
* gnu/packages/music.scm (gx-vbass-preamp-lv2)[arguments]: Remove field.
2017-12-16 09:01:56 +01:00
6ac8c78c89
gnu: gx-guvnor-lv2: Download sources from git.
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* gnu/packages/music.scm (gx-guvnor-lv2)[source]: Download from git.
[arguments]: Decouple "install" target from build target.
2017-12-16 09:01:56 +01:00
4b35953257
gnu: gx-guvnor-lv2: Correct license.
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* gnu/packages/music.scm (gx-guvnor-lv2)[license]: Use GPLv3+.
2017-12-16 09:01:55 +01:00
Ricardo Wurmus