0ef54303f3
gnu: c-graph: Update to 2.0.1.
...
* gnu/packages/maths.scm (c-graph): Update to 2.0.1.
2019-03-07 22:00:52 +02:00
0ae735bcc8
activation: Build account databases with (gnu build accounts).
...
* gnu/build/activation.scm (enumerate, current-users, current-groups)
(add-group, add-user, modify-user, ensure-user): Remove.
(activate-users+groups)[touch, activate-user]: Remove.
[make-home-directory]: New procedure.
Rewrite in terms of 'user+group-databases', 'write-group', etc.
* gnu/build/install.scm (directives): Remove "/root".
* gnu/system/shadow.scm (account-activation): Remove (setenv "PATH" ...)
expression, which is now unneeded.
2019-03-07 20:05:09 +01:00
ec600e4544
Add (gnu build accounts).
...
* gnu/build/accounts.scm, tests/accounts.scm: New files.
* Makefile.am (SCM_TESTS): Add tests/accounts.scm.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add build/accounts.scm.
2019-03-07 20:05:09 +01:00
6061d01512
activation: Operate on <user-account> and <user-group> records.
...
* gnu/system/accounts.scm (sexp->user-group, sexp->user-account): New
procedures.
* gnu/system/shadow.scm (account-activation): Call them in the arguments
to 'activate-users+groups'.
(account-shepherd-service): Likewise.
* gnu/build/activation.scm (activate-users+groups): Expect a list of
<user-account> and a list of <user-group>. Replace uses of 'match' on
tuples with calls to record accessors.
(activate-user-home): Likewise.
2019-03-07 20:05:09 +01:00
f6f67b87c0
system: Add (gnu system accounts).
...
The (gnu system accounts) module is meant to be used both on the build-
and on the host-side.
* gnu/system/shadow.scm <top level>: Call 'default-shell'.
(<user-account>, <user-group>): Move to...
* gnu/system/accounts.scm: ... here. New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add system/accounts.scm.
2019-03-07 20:04:02 +01:00
b60e9fb82f
gnu: fuseiso: Fix typo in description.
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* gnu/packages/linux.scm (fuseiso)[description]: Fix typo.
2019-03-07 17:12:46 +01:00
1e1142d8cb
gnu: Add nullmailer.
...
* gnu/packages/mail.scm (nullmailer): New public variable.
2019-03-07 15:39:46 +01:00
3189fad217
gnu: neovim: Let build phase return #T.
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* gnu/packages/vim.scm (neovim)[arguments]: Return #T from "patch-tic" phase.
2019-03-07 13:39:45 +01:00
3b296475bf
gnu: cd-hit: Support longer sequences.
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* gnu/packages/bioinformatics.scm (cd-hit)[arguments]: Pass MAX_SEQ to make
flags.
2019-03-07 13:38:01 +01:00
237ee6f2b2
gnu: python2-fastlmm: Disable tests.
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* gnu/packages/machine-learning.scm (python2-fastlmm)[arguments]: Disable
tests.
2019-03-07 13:37:58 +01:00
9fd6ad3e35
gnu: wireguard: Update to 0.0.20190227.
...
* gnu/packages/vpn.scm (wireguard): Update to 0.0.20190227.
[arguments]: Disable tests.
2019-03-07 12:23:43 +01:00
9cb4bda222
gnu: nftables: Update to 0.9.0.
...
* gnu/packages/linux.scm (nftables): Update to 0.9.0.
[arguments]: Add "--disable-man-doc" configure flag.
2019-03-07 12:08:21 +01:00
ccf2446730
gnu: minetest: Update to 5.0.0.
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* gnu/packages/games.scm (minetest-data, minetest): Update to 5.0.0.
2019-03-07 05:31:19 -05:00
0a10abf73e
gnu: neovim: Fix #34616 .
...
This fixes a segmentation fault in neovim, where an error return value
is passed in as a pointer.
* gnu/packages/vim.scm (neovim)[arguments](phases): Add 'patch-tic phase.
2019-03-07 11:08:31 +01:00
2702aa9136
gnu: unibilium: Update to 2.0.0.
...
* gnu/packages/terminal.scm (unibilium): Update to 2.0.0.
[native-inputs]: Add perl.
2019-03-07 09:48:03 +01:00
abe6e670d3
gnu: sane-backends-minimal: Fix USB support.
...
* gnu/packages/scanner.scm (sane-backends-minimal)[inputs]: Replace
libusb-compat with libusb.
[arguments]: Disable tests that require USB access.
2019-03-07 02:13:26 +01:00
d40ec4a0d0
pack: Add '--save-provenance'.
...
* guix/scripts/pack.scm (show-help, %options): Add '--save-provenance'.
(guix-pack)[manifest-from-args]: Honor it.
* doc/guix.texi (Invoking guix pack): Document it.
2019-03-07 00:00:18 +01:00
2cb658a9a7
describe: Add 'package-provenance'.
...
* guix/scripts/package.scm (package-provenance): Move to...
* guix/describe.scm (package-provenance): ... here.
2019-03-07 00:00:18 +01:00
a4678c6ba1
database: Make 'register-items' transactional.
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* guix/store/database.scm (SQLITE_BUSY, register-output-sql): New variables.
(add-references): Don't try finalizing after each use, only after all the
uses (otherwise a finalized statement would be used if #:cache? was #f).
(call-with-transaction): New procedure.
(register-items): Use call-with-transaction to prevent broken intermediate
states from being visible.
* .dir-locals.el (call-with-transaction): indent it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-07 00:00:18 +01:00
274fa49100
gnu: linux-libre: Update to 5.0.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.
(%linux-libre-hash): Update hash.
(%linux-libre-4.20-patches): Rename to ...
(%linux-libre-5.0-patches): ... this.
(linux-libre, linux-libre-arm-generic, linux-libre-arm-omap2plus):
Use %linux-libre-5.0-patches instead of %linux-libre-4.20-patches.
* gnu/packages/aux-files/linux-libre/4.20-arm.conf,
gnu/packages/aux-files/linux-libre/4.20-arm64.conf,
gnu/packages/aux-files/linux-libre/4.20-i686.conf,
gnu/packages/aux-files/linux-libre/4.20-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/5.0-arm.conf,
gnu/packages/aux-files/linux-libre/5.0-arm64.conf,
gnu/packages/aux-files/linux-libre/5.0-i686.conf,
gnu/packages/aux-files/linux-libre/5.0-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Adjust accordingly.
2019-03-06 17:51:55 -05:00
9870f3ec61
gnu: linux-libre@4.19: Update to 4.19.27.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.27.
(%linux-libre-4.19-hash): Update hash.
2019-03-06 17:51:12 -05:00
1b1a6c028b
gnu: linux-libre@4.14: Update to 4.14.105.
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* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.105.
(%linux-libre-4.14-hash): Update hash.
2019-03-06 17:50:21 -05:00
7850fa891d
gnu: linux-libre@4.9: Update to 4.9.162.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.162.
2019-03-06 17:49:26 -05:00
38e37e73c7
nls: Add Swedish translation.
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* po/guix/sv.po: New file.
* po/guix/LINGUAS: Add 'sv'.
2019-03-06 23:35:08 +01:00
fc240e7e05
gnu: synthv1: Update to 0.9.5.
...
* gnu/packages/music.scm (synthv1): Update to 0.9.5.
2019-03-06 22:26:07 +01:00
6ef147bd1d
gnu: drumkv1: Update to 0.9.5.
...
* gnu/packages/music.scm (drumkv1): Update to 0.9.5.
2019-03-06 22:26:07 +01:00
cf6195906c
gnu: samplv1: Update to 0.9.5.
...
* gnu/packages/music.scm (samplv1): Update to 0.9.5.
2019-03-06 22:26:07 +01:00
4b159add6f
gnu: padthv1: Update to 0.9.5.
...
* gnu/packages/music.scm (padthv1): Update to 0.9.5.
2019-03-06 22:26:07 +01:00
d935f69b11
gnu: yoshimi: Update to 1.5.10.2.
...
* gnu/packages/music.scm (yoshimi): Update to 1.5.10.2.
2019-03-06 22:26:06 +01:00
01d8a2a3d9
gnu: electron-cash: Update to 3.3.6.
...
* gnu/packages/finance (electron-cash): Update to 3.3.6.
Signed-off-by: Leo Famulari <leo@famulari.name>
2019-03-06 16:06:26 -05:00
307603dd88
gnu: electrum: Update to 3.3.4.
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* gnu/packages/finance (electrum): Update to 3.3.4.
Signed-off-by: Leo Famulari <leo@famulari.name>
2019-03-06 16:06:26 -05:00
11599cff1e
gnu: diffoscope: Update to 113.
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* gnu/packages/package-management (diffoscope): Update to 113.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-03-06 22:05:07 +01:00
61e265d294
gnu: Add multitime.
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* gnu/packages/benchmark.scm (multitime): New variable.
2019-03-06 21:55:14 +01:00
8035819f4c
gnu: r-org-mm-eg-db: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-mm-eg-db): ...to here.
2019-03-06 21:43:33 +01:00
d56df35a25
gnu: r-org-hs-eg-db: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-hs-eg-db): ...to here.
2019-03-06 21:42:39 +01:00
f8780e96ff
gnu: r-org-dm-eg-db: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-dm-eg-db): ...to here.
2019-03-06 21:41:48 +01:00
3a08940e1a
gnu: r-org-ce-eg-db: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-ce-eg-db): ...to here.
2019-03-06 21:35:20 +01:00
7bc5d1b0e1
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
Move from here...
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
...to here.
2019-03-06 21:33:17 +01:00
13dabd6947
gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-bsgenome-dmelanogaster-ucsc-dm3):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3):
...to here.
2019-03-06 21:31:41 +01:00
0c792ffbd1
gnu: r-bsgenome-celegans-ucsc-ce10: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce10):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce10): ...to here.
2019-03-06 21:30:30 +01:00
b7d93cf508
gnu: r-bsgenome-celegans-ucsc-ce6: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce6):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce6): ...to here.
2019-03-06 21:29:20 +01:00
c3adc83054
gnu: r-bsgenome-mmusculus-ucsc-mm10: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm10):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10): ...to here.
2019-03-06 21:26:54 +01:00
5acb9052cf
gnu: r-bsgenome-mmusculus-ucsc-mm9: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm9):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9): ...to here.
2019-03-06 21:25:18 +01:00
fe0b76e215
gnu: r-bsgenome-hsapiens-ucsc-hg19: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19): ...to here.
2019-03-06 21:23:42 +01:00
40a6505711
gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-1000genomes-hs37d5):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-1000genomes-hs37d5):
...to here.
2019-03-06 21:23:20 +01:00
66e35ce63b
gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): Move
from here...
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): ...to
here.
2019-03-06 21:16:33 +01:00
bfb93b4889
gnu: r-geneplotter: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-geneplotter): Move from here...
* gnu/packages/bioconductor.scm (r-geneplotter): ...to here.
2019-03-06 21:13:38 +01:00
9f8698ad1c
gnu: Add guile-stis-parser.
...
* gnu/packages/guile-xyz.scm (guile-stis-parser): New variable.
2019-03-06 21:07:49 +01:00
3d13b448e5
gnu: r-copynumber: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-copynumber): Move from here...
* gnu/packages/bioconductor.scm (r-copynumber): ...to here.
2019-03-06 21:07:49 +01:00
6aa896d82e
gnu: Update copyright headers.
...
This is a follow-up to commit 1fe9a36173
2019-03-06 21:07:49 +01:00
Efraim Flashner