Commit Graph

37913 Commits

Author SHA1 Message Date
Christopher Baines 9718265eec
gnu: mash: Use C++ 14.
I'm looking to upgrade capnproto, and mash fails to build with 0.7. Therefore,
tweak the compilation to allow it to build with 0.7. The package also builds
with the current version of capnproto. I got the idea of changing the c++
version from here [1].

1: https://github.com/marbl/Mash/issues/98

* gnu/packages/bioinformatics.scm (mash)[arguments]: Add new use-c++14 phase.
2018-12-05 20:29:12 +00:00
Leo Famulari 07315efc65
gnu: Syncthing: Update to 0.14.54.
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.54.
2018-12-05 15:23:55 -05:00
Rene e8338e9101
gnu: filezilla: Update to 3.39.0.
* gnu/packages/ftp.scm (filezilla): Update to 3.39.0.
2018-12-05 14:54:01 -05:00
Rene 07df80d195
gnu: libfilezilla: Update to 0.15.1.
* gnu/packages/ftp.scm (libfilezilla): Update to 0.15.1.
[inputs]: Add nettle.
2018-12-05 14:54:00 -05:00
Rene e920165979
gnu: balsa: Update to 2.5.6.
* gnu/packages/mail.scm (balsa): Update to 2.5.6.
[source]: Update URI.
2018-12-05 14:54:00 -05:00
Rene 7da4dbb3f2
gnu: pdfgrep: Update to 2.1.2.
* gnu/packages/pdf.scm (pdfgrep): Update to 2.1.2.
2018-12-05 14:54:00 -05:00
Laura Lazzati 214e55fa87
doc: Fix typo
* doc/guix.texi (Invoking guix system): Fix typo.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-12-05 14:34:24 -05:00
Leo Famulari 8f11439c36
gnu: eyeD3: Update to 0.8.8.
* gnu/packages/mp3.scm (eyed3): Update to 0.8.8.
2018-12-05 14:08:39 -05:00
Ludovic Courtès 676c3adc14
gnu: guix: Update to c845323. 2018-12-05 18:30:16 +01:00
Ludovic Courtès c845323d4b
gnu: guix: Update to 0.16.0. 2018-12-05 16:30:58 +01:00
Ludovic Courtès 4a0b87f0ec
guix-install.sh: Use the "ci.guix.info.pub" file name for clarity.
* etc/guix-install.sh (sys_authorize_build_farms): Use the
"ci.guix.info.pub" file name rather "berlin.guixsd.org.pub".
2018-12-05 16:26:55 +01:00
Ludovic Courtès 970ebdae8c
services: guix-daemon: Fix authorization of multiple keys.
Previously, the 'unless (file-exists? "/etc/guix/acl")' guard would mean
that only the first key in the list would get registered since were were
generating one registration snippet per key.  This fixes that.

* gnu/services/base.scm (hydra-key-authorization): Change to be a
'for-each' loop iterating on #$KEYS.
2018-12-05 16:24:50 +01:00
Danny Milosavljevic aa00797877
gnu: beets: Make it compatible with Python 3.7.
* gnu/packages/music.scm (beets)[arguments]<#:phases>
[make-python3.7-compatible]: New phase.
2018-12-05 14:58:20 +01:00
Leo Famulari 3a2627b83c
gnu: khal: Disable another test.
Normally we shouldn't disable tests just because they fail.  However,
since the recent glibc update, it's not possible to keep using an old
khal, because khal requires locales to be set up properly.

* gnu/packages/calendar.scm (khal)[arguments]: Disable a failing test.
2018-12-05 00:12:56 -05:00
Pierre Langlois 4b193da3f9
gnu: sbcl-stumpwm: Drop ECL lisp support and rename to 'stumpwm'.
StumpWM version 1.0.0 was the last version to support lisps other than SBCL.
This patch renames the current version of Stumpwm to simply 'stumpwm' instead
of 'sbcl-stumpwm' since it's redundant, and removes the unmaintained
'ecl-stumpwm' package.

* gnu/packages/lisp.scm (sbcl-stumpwm): Deprecate in favor of 'stumpwm'.
[name]: Rename to 'stumpwm'.
[arguments]: Set '#:asd-system-name' to 'stumpwm'.
[properties]: Replace ecl-variant with cl-source-variant.
(ecl-stumpwm): Remove variable.
(cl-stumpwm): Replace 'sbcl-stumpwm' with 'stumpwm' and adapt.
(sbcl-stumpwm+slynk): Deprecate in favor of 'stumpwm+slynk'.
[name]: Rename to 'stumpwm-with-slynk'.
[inherit, inputs, arguments]: Replace 'sbcl-stumpwm' with 'stumpwm'.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2018-12-05 07:32:09 +03:00
Leo Famulari f224ea365b
gnu: go-github-com-client-golang-prometheus: Update to 0.9.1-0.7e9098b.
* gnu/packages/syncthing.scm (go-github-com-client-golang-prometheus):
Update to 0.9.1-0.7e9098b.
[arguments]: Skip the test suite.
2018-12-04 21:36:34 -05:00
Leo Famulari f2bf63d029
gnu: go-github-com-syncthing-notify: Update to 0.0.0-3.116c45b.
* gnu/packages/syncthing (go-github-com-syncthing-notify): Update to 0.0.0-3.116c45b.
2018-12-04 21:36:34 -05:00
Leo Famulari c7c0b3a98b
gnu: Syncthing: Update to 0.14.53.
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.53.
[source]: Use bundled libraries.
[inputs]: Remove field.
[arguments]: Simplify the 'build' phase.
2018-12-04 21:33:49 -05:00
Oleg Pykhalov 79a0eabd2a
gnu: Add python-xmltodict.
* gnu/packages/xml.scm (python-xmltodict): New variable.
2018-12-05 03:22:55 +03:00
Pierre Neidhardt 89ca445c29
gnu: sbcl-next: Update to 1.1.0.
* gnu/packages/web-browsers.scm (sbcl-next): Update to 1.1.0.
2018-12-05 00:38:58 +01:00
Pierre Neidhardt b96bd82133
gnu: next-gtk-webkit: Update to 1.1.0.
* gnu/packages/web-browsers.scm (next-gtk-webkit): Update to 1.1.0.
2018-12-05 00:38:44 +01:00
Ludovic Courtès eeedb094ec
Update NEWS. 2018-12-05 00:11:22 +01:00
Ludovic Courtès e3c03952be
maint: update-NEWS: Don't produce full package lists.
The lists of new and upgraded packages in 'NEWS' had become way too long
and redundant with what 'guix pull' reports.

* build-aux/update-NEWS.scm (write-packages-added): Don't print ADDED.
(write-packages-updates)[important, table, latest, noteworthy]: New
variables.
Print NOTEWORTHY rather than all of UPGRADED.
(main): Print PREVIOUS-VERSION and NEW-VERSION.
2018-12-05 00:08:34 +01:00
Ludovic Courtès 273cce9875
Update NEWS. 2018-12-05 00:08:28 +01:00
Ludovic Courtès bd3e1f1694
doc: Update "Limitations".
* doc/guix.texi (Limitations): Update package count.
2018-12-05 00:08:28 +01:00
Ludovic Courtès c16c119d0a
gnu: quilt: Use shorter file names for patches.
We were reaching the 99-character limit of POSIX tar.

* gnu/packages/patches/quilt-compat-getopt-fix-option-with-nondigit-param.patch:
Rename to...
* gnu/packages/patches/quilt-getopt-nondigit-param.patch: ... this.
* gnu/packages/patches/quilt-compat-getopt-fix-second-separator.patch:
Rename to...
* gnu/packages/patches/quilt-getopt-second-separator.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/patchutils.scm (quilt)[source](patches): Likewise.
2018-12-05 00:08:28 +01:00
Christopher Baines fe5969656a
gnu: mongo-tools: Fix build.
I guess this broke when upgrading go. I did try upgrading to the later patch
and minor releases, but they had similar problems, so lets upgrade separately.

* gnu/packages/databases.scm (mongo-tools)[arguments]: Add patch-source phase.
2018-12-04 20:27:04 +00:00
Marius Bakke b4c684cdf3
gnu: mbedtls-apache: Update to 2.14.1 [fixes CVE-2018-19608].
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.14.1.
2018-12-04 21:13:31 +01:00
Marius Bakke 17074cae32
gnu: samba.scm: Sort module imports.
* gnu/packages/samba.scm (gnu): Sort imports.
2018-12-04 21:13:31 +01:00
Marius Bakke bdf161251a
gnu: ldb: Update to 1.4.3.
* gnu/packages/samba.scm (ldb): Update to 1.4.3.
[inputs]: Add LMDB.
2018-12-04 21:13:31 +01:00
Marius Bakke 44eff75ea3
gnu: samba: Update to 4.9.3.
* gnu/packages/samba.scm (samba): Update to 4.9.3.
[inputs]: Add GPGME, JANSSON, LIBARCHIVE and LMDB.
2018-12-04 21:13:31 +01:00
Marius Bakke 69d30ba280
gnu: re2: Update to 2018-12-01.
* gnu/packages/regex.scm (re2): Update to 2018-12-01.
2018-12-04 21:13:31 +01:00
Marius Bakke 56302fc1ec
gnu: re2: Download sources from git.
* gnu/packages/regex.scm (re2)[source]: Change to GIT-FETCH.
2018-12-04 21:13:31 +01:00
Marius Bakke db2db1296b
gnu: python-django: Update to 1.11.17.
* gnu/packages/django.scm (python-django): Update to 1.11.17.
2018-12-04 21:13:31 +01:00
Christopher Baines 69a64ecd66
gnu: go-gopkg.in-tomb.v2: Fix build.
Looks like this test isn't compiling with newer versions of go, so fix it to
get the package building again.

* gnu/packages/golang.scm (go-gopkg.in-tomb.v2)[arguments]: Add new
patch-source phase.
2018-12-04 19:53:04 +00:00
Ludovic Courtès 040ae18819
tests: Increase root partitions size to 1.2G.
The system closure has grown slightly above 1GiB so adjust accordingly.

* gnu/tests/install.scm (%simple-installation-script): Increase vdb2 size of
1.2G,
(%extlinux-gpt-installation-script); ditto
(%simple-installation-script-for-/dev/vda): ditto,
(%separate-store-installation-script): ditto for vdb3,
(%encrypted-root-installation-script): ditto.
2018-12-04 20:30:50 +01:00
Arun Isaac 30a1f6e214
gnu: Add apertium.
* gnu/packages/dictionaries.scm (apertium): New variable.
2018-12-04 23:08:45 +05:30
Arun Isaac d2e1d02253
gnu: Add lttoolbox.
* gnu/packages/dictionaries.scm (lttoolbox): New variable.
2018-12-04 23:08:45 +05:30
Arun Isaac 5790d163a4
gnu: dictionaries: Use license prefix.
* gnu/packages/dictionaries.scm: Import (guix licenses) with license:
prefix. Fix all license fields.
2018-12-04 23:08:33 +05:30
Ricardo Wurmus 42c3e00c20
gnu: pigx-rnaseq: Update to 0.0.5.
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.5.
[inputs]: Replace snakemake-4 with snakemake.
2018-12-04 16:21:50 +01:00
Ludovic Courtès 606b1a1e6b
doc: Update substitute server.
Fixes an accidental revert in commit
0a5fa004f7.

* doc/guix.texi (SUBSTITUTE-SERVER): Really change to ci.guix.info.
2018-12-04 15:28:07 +01:00
Andreas Enge 4ebfe99a3f
gnu: pari-gp: Update to 2.11.1.
* gnu/packages/algebra.scm (pari-gp): Update to 2.11.1.
2018-12-04 13:38:16 +01:00
Tim Gesthuizen f5a15a86b0
gnu: emacs-irony-mode: Fetch source using git.
* gnu/packages/emacs.scm (emacs-irony-mode)[source]: Rewrite in terms of GIT-FETCH.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-12-04 11:14:21 +01:00
Timo Eisenmann 3a1835128d
gnu: enlightenment: Use absolute path to 'edje_cc'.
* gnu/packages/enlightenment.scm (enlightenment)[arguments]: In
'set-system-actions', set absolute file name to 'edje_cc'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-12-04 11:06:00 +01:00
Paul Garlick dd6cb4a0af
gnu: fenics: Skip extra demo in 'check' phase.
* gnu/packages/simulation.scm (fenics)[arguments]: Add 'curl-curl'
demo to list of demos that require meshes supplied by git-lfs.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-12-04 10:58:56 +01:00
Paul Garlick af5236739e
gnu: petsc-openmpi: Configure with support for HYPRE preconditioner.
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add hypre-openmpi.
[arguments]: Add 'with-hypre=1' flag.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-12-04 10:58:50 +01:00
Ludovic Courtès 7bc5657f84
grafts: Mark as non substitutable.
* guix/grafts.scm (graft-derivation/shallow): Pass #:substitutable? to
'build-expression->derivation'.
2018-12-04 10:57:56 +01:00
Ludovic Courtès 9300e2e893
refresh: '--list-dependents' ignores deprecated packages.
* guix/scripts/refresh.scm (all-packages): Filter out deprecated packages.
2018-12-04 10:57:56 +01:00
Ludovic Courtès 0a5fa004f7
build: Default to https://ci.guix.info for substitutes.
* config-daemon.ac (guix_substitute_urls): Always default to
"https://ci.guix.info".
* doc/guix.texi (SUBSTITUTE-SERVER): Switch to ci.guix.info.
* guix/scripts/build.scm (%default-log-urls): Likewise.
* guix/scripts/substitute.scm (%default-substitute-urls): Likewise.
* guix/store.scm (%default-substitute-urls): Likewise.
2018-12-04 10:57:56 +01:00
Ludovic Courtès 0bc02becca
Remove most references to hydra.gnu.org.
* Makefile.am (assert-binaries-available): Don't mention hydra.gnu.org
in comment.
* build-aux/check-available-binaries.scm: Likewise.
* build-aux/check-final-inputs-self-contained.scm: Likewise.
* doc/guix.texi (SUBSTITUTE-SERVER): New variable.
Use it throughout instead of "mirror.hydra.gnu.org".
* doc/contributing.texi (Submitting Patches): Likewise.
* gnu/services/base.scm (hydra-key-authorization)
(guix-activation): Remove mentions of "hydra.gnu.org" in comments and
messages.
* gnu/system/install.scm (%installation-services): Likewise.
* guix/scripts/size.scm (guix-size): Likewise.
2018-12-04 10:57:56 +01:00