1ab867bebb
gnu: Add r-pdist.
...
* gnu/packages/cran.scm (r-pdist): New variable.
2017-10-22 12:10:33 +02:00
6efc999678
gnu: Update coq-interval to 3.3.0.
...
* gnu/packages/ocaml.scm (coq-interval): Update to 3.3.0.
[inputs]: Add coq-bignums.
2017-10-22 10:21:25 +02:00
dbfb1a596a
gnu: Add coq-bignums.
...
* gnu/packages/ocaml.scm (coq-bignums): New variable.
2017-10-22 10:21:22 +02:00
3ffd180cc5
gnu: Update coq-coquelicot to 3.0.1.
...
* gnu/packages/ocaml.scm (coq-coquelicot): Update to 3.0.1.
2017-10-22 10:21:19 +02:00
2e331c9c43
gnu: Update coq-mathcomp to 1.6.2.
...
* gnu/packages/ocaml.scm (coq-mathcomp): Update to 1..6.2.
2017-10-22 10:21:16 +02:00
b44f13e04c
gnu: Update coq-flocq to 2.6.0.
...
* gnu/packages/ocaml.scm (coq-flocq): Update to 2.6.0.
2017-10-22 10:21:14 +02:00
6e4da73710
gnu: Update coq to 8.7.0.
...
* gnu/packages/ocaml.scm (coq): Update to 8.7.0.
[build-system]: Use ocaml-build-system.
[inputs]: Add python-2.
[arguments]: Disable two failing tests.
2017-10-22 10:21:11 +02:00
07b4cd3a48
gnu: camlp5: install META file.
...
* gnu/packages/ocaml.scm (camlp5) [phases]: New install-meta phase.
2017-10-22 10:20:50 +02:00
3d679ab1e5
gnu: lame: Update to 3.100.
...
* gnu/packages/mp3.scm (lame): Update to 3.100.
[source]: Don't hard-code version.
2017-10-22 00:39:26 +02:00
28d0b52164
gnu: python-pyqt: Update to 5.9.
...
* gnu/packages/qt.scm (python-pyqt): Update to 5.9.
2017-10-21 22:38:55 +02:00
079e679219
gnu: python-sip: Update to 4.19.3.
...
* gnu/packages/qt.scm (python-sip): Update to 4.19.3.
2017-10-21 22:38:55 +02:00
a4194d1684
gnu: rest: Update to 0.8.1.
...
* gnu/packages/gnome.scm (rest): Update to 0.8.1.
2017-10-21 17:43:46 +02:00
4b9a65bf6e
gnu: gnome-disk-utility: Update to 3.26.1.
...
* gnu/packages/gnome.scm (gnome-disk-utility): Update to 3.26.1.
[build-system]: Use meson-build-system.
[native-inputs]: Add gtk+:bin.
2017-10-21 17:43:46 +02:00
b27991179e
gnu: perl-geo-ip: Update to 1.51.
...
* gnu/packages/networking.scm (perl-geo-ip): Update to 1.51.
2017-10-21 17:43:46 +02:00
5713bbf157
Use HTTPS for bioconductor.org.
...
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for
bioconductor.org URLs.
* gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter)
(r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category)
(r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews)
(r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata)
(r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi)
(r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray)
(r-summarizedexperiment, r-genomicalignments, r-rtracklayer)
(r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern)
(r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport)
(r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid)
(r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)
(r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db)
(r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db)
(r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9)
(r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene)
(r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10)
(r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]:
Likewise.
* gnu/packages/statistics.scm (r-rcurl)[source]: Likewise.
* guix/build-system/r.scm (bioconductor-uri): Likewise.
* guix/import/cran.scm (%cran-url, bioconductor-package?)
(bioconductor-data-package?, bioconductor-experiment-package?): Likewise.
2017-10-21 17:43:40 +02:00
82bdcfe821
gnu: schismtracker: Update to 20170910.
...
* gnu/packages/music.scm (schismtracker): Update to 20170910.
2017-10-21 09:44:28 -04:00
fd75eb6cd4
gnu: Fix the hashes of mutated GitHub archives.
...
Fixes <https://bugs.gnu.org/28745 >.
* gnu/packages/audio.scm (csound): Fix hash.
* gnu/packages/engineering.scm (fritzing): Likewise.
* gnu/packages/erlang.scm (erlang): Likewise.
* gnu/packages/fonts.scm (font-google-material-design-icons): Likewise.
* gnu/packages/graphics.scm (ogre): Likewise.
* gnu/packages/java.scm (java-plexus-interpolation, antlr3): Likewise.
* gnu/packages/serialization.scm (yaml-cpp): Likewise.
* gnu/packages/version-control.scm (libgit2): Likewise.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-20 22:55:51 +02:00
7827032a7c
gnu: libvirt: Fix CVE-2017-1000256.
...
* gnu/packages/patches/libvirt-CVE-2017-1000256.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (libvirt)[source]: Use it.
2017-10-20 15:36:43 -04:00
48f8b07082
gnu: mysql: Update to 5.7.20.
...
* gnu/packages/databases.scm (mysql): Update to 5.7.20.
2017-10-20 15:36:42 -04:00
3890df5800
gnu: webkitgtk: Update to 2.18.1.
...
* gnu/packages/webkit.scm (webkitgtk): Update to 2.18.1.
2017-10-20 15:36:39 -04:00
a6e70e1169
gnu: youtube-dl: Update to 2017.10.20.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.10.20.
2017-10-20 19:48:34 +02:00
5a740d06b6
gnu: dovecot: Update to 2.2.33.2.
...
* gnu/packages/mail.scm (dovecot): Update to 2.2.33.2.
2017-10-20 19:48:34 +02:00
fa9ac83ec4
gnu: ola: Build with protobuf@2.
...
This follows up commit dd12d4aad0
2017-10-20 19:48:33 +02:00
77aa706ab6
gnu: font-hack: Update to 3.000.
...
* gnu/packages/fonts.scm (font-hack): Update to 3.000.
[source]: Download from new account.
[license]: Explicitly list all licences.
2017-10-20 19:48:33 +02:00
c812f46058
gnu: Add aegisub.
...
* gnu/packages/video.scm (aegisub): New variable.
2017-10-20 19:41:57 +02:00
6779ae27e6
gnu: Add ffms2.
...
* gnu/packages/video.scm (aegisub): New variable.
2017-10-20 19:41:34 +02:00
f71ce2824d
gnu: speexdsp: Fix building on aarch64-linux.
...
* gnu/packages/xiph.scm (speexdsp)[arguments]: On aarch64-linux, disable
neon optimisations.
2017-10-20 16:23:48 +03:00
6df274073a
gnu: Add emacs-json-snatcher.
...
* gnu/packages/emacs.scm (emacs-json-snatcher): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-20 14:41:41 +02:00
49d3d1d937
gnu: shellcheck: Update to 0.4.6.
...
* gnu/packages/haskell.scm (shellcheck): Update to 0.4.6.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-20 14:41:41 +02:00
3b2fa47879
gnu: dos2unix: Update to 7.4.0.
...
* gnu/packages/textutils.scm (dos2unix): Update to 7.4.0.
2017-10-20 02:16:56 +02:00
6c0c175271
gnu: cowsay: Swap ‘build’ and ‘install’ phases.
...
* gnu/packages/games.scm (cowsay)[arguments]: Invoke ‘install.sh’ during the
‘install’ phase. Delete the ‘build’ phase, as there's nothing to be built.
2017-10-20 02:16:55 +02:00
46ba5337c0
gnu: cowsay: Update to 3.04.
...
* gnu/packages/games.scm (cowsay): Update to 3.04.
[source]: Download from new location.
[home-page]: Point directly to the relevant page.
[description]: Correct mark-up and expand slightly.
2017-10-20 02:16:54 +02:00
8cccd09d3e
gnu: colordiff: Use HTTPS home page.
...
* gnu/packages/patchutils.scm (colordiff)[home-page]: Use HTTPS.
2017-10-20 02:16:54 +02:00
fc622383a7
gnu: unbound: Update to 1.6.7.
...
* gnu/packages/dns.scm (unbound): Update to 1.6.7.
2017-10-20 02:16:53 +02:00
378140e591
gnu: neofetch: Update to 3.3.0.
...
* gnu/packages/admin.scm (neofetch): Update to 3.3.0.
[arguments]: Add ‘install’ phase replacement that manually invokes make.
2017-10-20 02:16:52 +02:00
1e9433cf4d
gnu: qtox: Update to 1.12.1.
...
* gnu/packages/messaging.scm (qtox): Update to 1.12.1.
2017-10-20 02:16:52 +02:00
57473bfc51
gnu: speedtest-cli: Update to 1.0.7.
...
* gnu/packages/networking.scm (speedtest-cli): Update to 1.0.7.
2017-10-20 02:16:51 +02:00
47b85a69c0
gnu: cppcheck: Update to 1.81.
...
* gnu/packages/check.scm (cppcheck): Update to 1.81.
2017-10-20 02:16:51 +02:00
7f65202990
gnu: python-sge-pygame: Update source URL.
...
* gnu/packages/game-development.scm (python-sge-pygame)[source]: Update URL.
2017-10-19 18:01:37 -04:00
9ccce79910
gnu: musl: Update to 1.1.17.
...
* gnu/packages/musl.scm (musl): Update to 1.1.17.
[source]: Remove patch.
* gnu/packages/patches/musl-CVE-2016-8859.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-10-19 17:37:25 -04:00
37ce440dcf
download: Download a nar when a VCS checkout fails.
...
Fixes <https://bugs.gnu.org/28709 >.
* guix/build/download-nar.scm: New file.
* Makefile.am (MODULES): Add it.
* guix/cvs-download.scm (cvs-fetch)[zlib, config.scm, modules]: New
variables.
[build]: Use MODULES. Add call to 'download-nar'.
* guix/git-download.scm (git-fetch): Likewise.
* guix/hg-download.scm (hg-fetch): Likewise.
2017-10-19 23:21:49 +02:00
8c3488259e
Add (guix progress).
...
Among other things, this removes (guix utils), (guix ui), (guix config),
etc. from the closure of (guix build download), as was the case since
798648515b
2017-10-19 23:21:49 +02:00
347fa4aebf
download: Make 'http-fetch' public.
...
* guix/build/download.scm (http-fetch): Remove 'file' parameter. Change
to return an input port and the content-length. Make public.
(url-fetch): Adjust accordingly.
2017-10-19 23:21:49 +02:00
b3ac341d4e
download: Remove old-Guile leftovers.
...
This is a followup to 36626c556e
2017-10-19 23:21:49 +02:00
9b396c0cab
vm: Always use GRUB/i386.
...
Fixes <https://bugs.gnu.org/28768 >.
Reported by Oleg Pykhalov <go.wigust@gmail.com>.
* gnu/system/vm.scm (virtualized-operating-system): Override the
'bootloader' field.
2017-10-19 23:21:49 +02:00
b11962067b
gnu: linux-libre: Update to 4.13.8.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.8.
(%linux-libre-hash): Update hash.
2017-10-19 15:31:47 -04:00
7a402621ec
gnu: linux-libre@4.9: Update to 4.9.57.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.57.
2017-10-19 15:31:02 -04:00
a7c3dfeb6c
gnu: linux-libre@4.4: Update to 4.4.93.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.93.
2017-10-19 15:30:30 -04:00
a8401c4ef1
gnu: linux-libre@4.1: Update to 4.1.45.
...
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.45.
Remove patch that is now included upstream.
2017-10-19 15:29:09 -04:00
8c1db4fc58
gnu: yadifa: Update to 2.2.6.
...
* gnu/packages/dns.scm (yadifa): Update to 2.2.6.
2017-10-19 21:21:01 +02:00
Ricardo Wurmus