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11574 Commits

Author SHA1 Message Date
Ricardo Wurmus f315f4fcab gnu: r-genomation: Update to 1.2.2. 
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.2.2.
 2016-03-30 11:59:16 +02:00
Ricardo Wurmus 571f0b63d5 gnu: r-genomicfeatures: Update to 1.22.13. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to
  1.22.13.
 2016-03-30 11:59:16 +02:00
Ricardo Wurmus ffaf72ad96 gnu: r-rtracklayer: Update to 1.30.4. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.30.4.
 2016-03-30 11:59:15 +02:00
Ricardo Wurmus ac2d8b0fb8 gnu: r-genomicalignments: Update to 1.6.3. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to
  1.6.3.
 2016-03-30 11:59:15 +02:00
Ricardo Wurmus 7eade1c5f9 gnu: r-summarizedexperiment: Update to 1.0.2. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to
  1.0.2.
 2016-03-30 11:59:15 +02:00
Ricardo Wurmus 53fd0f5e1d gnu: r-biostrings: Update to 2.38.4. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.38.4.
 2016-03-30 11:59:15 +02:00
Ricardo Wurmus 5fe3115415 gnu: r-genomicranges: Update to 1.22.4. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.22.4.
 2016-03-30 11:59:15 +02:00
Ricardo Wurmus 9cc22d28d8 gnu: r-genomeinfodb: Update to 1.6.3. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.6.3.
 2016-03-30 11:59:15 +02:00
Efraim Flashner 48fa9312ab gnu: libpaper: Update source url. 
Reported by shanemikel_ on irc.

* gnu/packages/ghostscript.scm (libpaper)[source]: Update source url to
download from Fedora.
[home-page]: Use https.
 2016-03-30 10:49:03 +03:00
Ludovic Courtès 61cdad351d gnu: guix: Ignore the user's 'GUILE_LOAD_COMPILED_PATH'. 
Reported by <rain1@openmailbox.org>.

* gnu/packages/package-management.scm (guix-0.10.0)[arguments]: Use '=
instead of 'prefix in call to 'wrap-program'.
 2016-03-29 22:13:20 +02:00
Rene Saavedra 3a9a4c51e8 gnu: Add libzapojit. 
* gnu/packages/gnome.scm (libzapojit): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-03-29 22:13:20 +02:00
Leo Famulari b7fbf297c8 gnu: khal: Disable failing tests. 
* gnu/packages/calendar.scm (khal)[arguments]: Disable failing tests in
'disable-tests' phase.
 2016-03-29 15:35:00 -04:00
Efraim Flashner d1ceedf8b1 gnu: gst-plugins-good: Update to 1.8.0. 
* gnu/packages/gstreamer.scm (gst-plugins-good): Update to 1.8.0.
[home-page]: Use https.
[arguments]: Disable tests that fail non-deterministically.
 2016-03-29 21:34:52 +03:00
Efraim Flashner 40dad30c5e gnu: gst-plugins-ugly: Update to 1.8.0. 
* gnu/packages/gstreamer.scm (gst-plugins-ugly): Update to 1.8.0.
[home-page]: Use https.
 2016-03-29 21:34:52 +03:00
Efraim Flashner d2b5dec5b0 gnu: python-gst: Update to 1.8.0. 
* gnu/packages/gstreamer.scm (python-gst, python2-gst): Update to 1.8.0.
[home-page]: Use https.
 2016-03-29 21:34:52 +03:00
Efraim Flashner 70e863e53e gnu: gst-plugins-base: Update to 1.8.0. 
* gnu/packages/gstreamer.scm (gst-plugins-base): Update to 1.8.0.
[home-page]: Use https.
 2016-03-29 21:34:52 +03:00
Efraim Flashner ab0a56201d gnu: gstreamer: Update to 1.8.0. 
* gnu/packages/gstreamer.scm (gstreamer): Update to 1.8.0.
 2016-03-29 21:34:52 +03:00
Ludovic Courtès 50ebd439c7 Merge branch 'version-0.10.0' 2016-03-29 16:13:41 +02:00
Ludovic Courtès f98b48dc51 gnu: guix: Update development snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to 7611393.
(guix): Set to GUIX-DEVEL.
 2016-03-29 09:35:22 +02:00
宋文武 67c2fc01a0 gnu: Add uwsgi. 
* gnu/packages/web.scm (uwsgi): New variable.
 2016-03-29 11:50:24 +08:00
宋文武 7ad1fee52e gnu: Add cgit. 
* gnu/packages/version-control.scm (cgit): New variable.
 2016-03-29 11:50:24 +08:00
Ludovic Courtès 7611393547 gnu: guix: Default to 0.10.0. 
This updates 58f0aae.

* gnu/packages/package-management.scm (guix): Set to GUIX-0.10.0.
 2016-03-28 23:54:48 +02:00
Ludovic Courtès 58f0aae5cb gnu: guix: Update to 0.10.0. 
* gnu/packages/package-management.scm (guix-0.8.3): Rename to...
(guix-0.10.0): ... this.  Adjust users.
(guix): Set to GUIX-0.10.0.
 2016-03-28 23:38:00 +02:00
Ludovic Courtès 34bf416e4a Update NEWS. 2016-03-28 22:51:18 +02:00
Ludovic Courtès 7f949db03e guix system: Warn against missing 'guix pull'. 
Suggested by Leo Famulari and others.

* guix/scripts/system.scm (maybe-suggest-running-guix-pull): New
procedure.
(perform-action): Call it when ACTION is 'reconfigure.
 2016-03-28 22:50:25 +02:00
Ludovic Courtès e2f41133e9 doc: We have even more than 3,000 packages. 
Suggested by Chris Marusich <cmmarusich@gmail.com>.

* doc/guix.texi (Limitations): Increase package count.
 2016-03-28 22:25:42 +02:00
Ludovic Courtès d70533cbe9 store: Prepend mirror.hydra.gnu.org to %DEFAULT-SUBSTITUTE-URLS. 
This allows GuixSD to default to the right list of URLs, with
mirror.hydra.gnu.org coming first.

Reported by Chris Marusich <cmmarusich@gmail.com>.

* guix/store.scm (%default-substitute-urls): Prepend
"mirror.hydra.gnu.org."
 2016-03-28 22:25:42 +02:00
Ludovic Courtès efa77c6c92 doc: Explain why the config file should be stored on the target. 
Suggested by Chris Marusich <cmmarusich@gmail.com>.

* doc/guix.texi (Proceeding with the Installation): Explain why the
config file should be on the target file system.
 2016-03-28 22:25:42 +02:00
Ludovic Courtès 15650ac2a0 doc: Suggest 'dhclient -v'. 
Suggested by Chris Marusich <cmmarusich@gmail.com>.

* doc/guix.texi (Preparing for Installation): Add "-v" for dhclient.
 2016-03-28 22:25:42 +02:00
Ludovic Courtès 9c18cf9bca doc: Suggest running "info info" during system installation. 
Based on a suggestion by Chris Marusich <cmmarusich@gmail.com>.

* doc/guix.texi (System Installation): Suggest running "info info".
 2016-03-28 22:25:42 +02:00
Ludovic Courtès b397c0d58a doc: Clarify 'cow-store'. 
Suggested by Chris Marusich <cmmarusich@gmail.com>.

* doc/guix.texi (Proceeding with the Installation): Clarify what
'cow-store' is about.
 2016-03-28 22:25:42 +02:00
Ludovic Courtès ff925d37e0 doc: Make it clear that networking is needed for GuixSD installation. 
Suggested by Jan Nieuwenhuizen <janneke@gnu.org>.

* doc/guix.texi (Preparing for Installation): Make it clear that
networking is required.
 2016-03-28 22:25:42 +02:00
Ludovic Courtès 09866b3962 doc: Augment documentation about security updates. 
* doc/guix.texi (Security Updates): Add paragraph on the big picture of
security updates.  Cross-reference 'guix lint'.
(Invoking guix lint): Add CVE URLs.
 2016-03-28 22:25:42 +02:00
Ludovic Courtès c3cfb7e330 nls: Update 'da' translation. 2016-03-28 22:25:42 +02:00
Ricardo Wurmus e0b90dbf65 gnu: qtractor: Update to 0.7.5. 
* gnu/packages/music.scm (qtractor): Update to 0.7.5.
 2016-03-28 09:52:16 +02:00
Leo Famulari 36c2c8c826 gnu: beets: Run tests with python-nose. 
* gnu/packages/music.scm (nose)[native-inputs]: Add python-nose.
[arguments]: Replace 'check' and use python-nose.
 2016-03-27 18:24:19 -04:00
David Thompson 13bc8d5e4f environment: Properly handle SIGINT. 
Switching to execlp means that the process spawned in a container is PID
1, which obsoleted one of the 'guix environment --container' tests
because the init process can't be killed in the usual manner.

* guix/scripts/environment.scm (launch-environment/fork): New procedure.
(launch-environment): Switch from system* to execlp.  Add handler for
SIGINT.
(guix-environment): Use launch-environment/fork.
* tests/guix-environment-container.sh: Replace abnormal exit test with
one that works now that the spawned process is PID 1.
 2016-03-27 15:09:21 -04:00
Ludovic Courtès c8786834ef Update 'NEWS'. 2016-03-27 19:23:26 +02:00
Leo Famulari d3e3468fb8 gnu: python-pyechonest: Clean up description. 
* gnu/packages/music.scm (pyechonest)[description]: Remove "open source" from
the description.
 2016-03-26 17:25:13 -04:00
Efraim Flashner e12f047f75 gnu: pspp: Update to 0.10.0. 
* gnu/packages/maths.scm (pspp): Update to 0.10.0.
[inputs]: Switch gtk+-2 to gtk+, gtksourceview-2 to gtksourceview.
 2016-03-26 22:39:29 +03:00
David Thompson 8d50632373 gnu: sdl2-ttf: Update to 2.0.14. 
* gnu/packages/sdl.scm (sdl2-ttf): Update to 2.0.14 and remove bundled
  libraries from source tarball.
 2016-03-26 13:35:06 -04:00
David Thompson 64ee72e124 gnu: sdl2-image: Update to 2.0.1. 
* gnu/packages/sdl.scm (sdl2-image): Update to 2.0.1.
 2016-03-26 13:35:06 -04:00
David Thompson efd75ade17 gnu: sdl2-mixer: Update to 2.0.1. 
* gnu/packages/sdl.scm (sdl2-mixer): Update to 2.0.1 and remove bundled
  libraries in source tarball.
 2016-03-26 13:35:06 -04:00
David Thompson a313e0850c gnu: sdl-mixer: Add ModPlug support. 
* gnu/packages/sdl.scm (sdl-mixer)[inputs]: Add libmodplug.
 2016-03-26 13:35:06 -04:00
David Thompson 4c0e59d1a8 gnu: sdl2: Update to 2.0.4. 
* gnu/packages/sdl.scm (sdl2): Update to 2.0.4.
 2016-03-26 13:35:06 -04:00
Mark H Weaver 641d05188d doc: Fix typo: "wpa_supplication" --> "wpa_supplicant". 
* doc/guix.texi (Preparing for Installation): Fix typo.
 2016-03-26 13:15:11 -04:00
David Thompson 7c776ddcc0 gnu: crossguid: Set explicit file name for source checkout. 
* gnu/packages/kodi.scm (crossguid)[source]: Set explicit file-name to
  satisfy linter.
 2016-03-26 09:52:28 -04:00
David Thompson a01ad63893 environment: container: Create dummy home directory and /etc/passwd. 
* guix/scripts/environment.scm (launch-environment/container): Change
$HOME to the current user's home directory instead of
/homeless-shelter.  Create a dummy /etc/passwd with a single entry for
the current user.
* doc/guix.texi ("invoking guix environment"): Add a note about the
dummy home directory and /etc/passwd.
 2016-03-26 09:38:27 -04:00
Mark H Weaver 51514e6959 gnu: expat: Update to 2.1.1. 
* gnu/packages/patches/expat-CVE-2015-1283.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/xml.scm (expat): Update to 2.1.1.
[source]: Use bz2 tarball.  Remove patch.
 2016-03-25 21:38:16 -04:00
Ludovic Courtès bf9eacd2af doc: Mention 'guix challenge' in "Features". 
* doc/guix.texi (Features): Mention trust and 'guix challenge'.
 2016-03-25 23:54:12 +01:00