Commit Graph

38206 Commits

Author SHA1 Message Date
Pierre Neidhardt 8894668cd2
gnu: discrover: Comment on attempt of minimal texlive-union.
* gnu/packages/bioinformatics.scm (discrover): Comment on attempt of minimal
  texlive-union.
2018-12-20 12:07:40 +01:00
Ricardo Wurmus 10a1cacb16
import: cran: Try import via CRAN if package is not on Bioconductor.
* guix/import/cran.scm (fetch-description): Return #F on failure.
(cran->guix-package): Retry from CRAN on failure to fetch description from
bioconductor.
2018-12-20 09:42:22 +01:00
Rutger Helling 0290f533cc
gnu: Add grim.
* gnu/packages/image.scm (grim): New variable.
2018-12-20 08:59:36 +01:00
Rutger Helling e2dd54c090
gnu: Add scdoc.
* gnu/packages/man.scm (scdoc): New variable.
2018-12-20 08:59:36 +01:00
Rutger Helling 36e1ab842d
gnu: Add flatpak.
* gnu/packages/package-management.scm (flatpak): New variable.
2018-12-20 08:07:56 +01:00
Mark H Weaver 9378206468
gnu: linux-libre: Update to 4.19.11.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.19.11.
(%linux-libre-hash): Update hash.
2018-12-19 23:44:21 -05:00
Ludovic Courtès 9012d226fa
services: zabbix-front-end: Tweak error and hint messages.
* gnu/services/monitoring.scm (zabbix-front-end-config): Adjust error
and hint mssages.
2018-12-20 00:04:50 +01:00
Ludovic Courtès 40cc850aeb
download: 'built-in-builders*' relies on the functional cache.
The previous caching strategy, which used STORE as an 'eq?' key, would
no longer work when the functional cache is used because subsequent
store values are not 'eq?'.

* guix/download.scm (built-in-builders*): Rewrite in terms of
'mcached'.
2018-12-19 23:52:25 +01:00
Ludovic Courtès 87b711d200
utils: Memoize 'absolute-dirname'.
* guix/utils.scm (absolute-dirname): Wrap in 'mlambda'.
2018-12-19 23:52:25 +01:00
Ludovic Courtès 0b1be8fd57
packages: Turn 'cache!' into a single-value-return cache.
* guix/packages.scm (cache!): Assume THUNK returns a single value.
(cached): Likewise.
2018-12-19 23:52:24 +01:00
Ludovic Courtès b334674fe5
Use 'mapm' instead of 'sequence' + 'map'.
Previously we'd use the (sequence M (map P L)) idiom just because 'mapm'
was slower (not specialized for the given monad).  This is no longer the
case since commit dcb95c1fc9.

* guix/gexp.scm (lower-inputs): Use (mapm M P L) instead of (sequence
M (map P L)).
(lower-references, gexp->sexp, imported-files): Likewise.
* guix/profiles.scm (profile-derivation): Likewise.
* guix/scripts/environment.scm (inputs->requisites): Likewise.
* guix/scripts/system.scm (copy-closure): Likewise.
2018-12-19 23:52:24 +01:00
Ludovic Courtès 73b0ebdd5e
store: Add 'GUIX_PROFILING' support for the object cache.
* guix/store.scm (profiled?): New procedure.
(record-operation): Use it.
(record-cache-lookup!): New procedure.
(lookup-cached-object): Use it.
2018-12-19 23:52:24 +01:00
Nicolas Goaziou 207a79b2fe
gnu: python-duniterpy: Improve description.
* gnu/packages/finance.scm (python-duniterpy)[description]: Expound features
  to match list in homepage.
2018-12-19 23:49:46 +01:00
Nicolas Goaziou 42a57df874
gnu: python-duniterpy: Build documentation.
* gnu/packages/finance.scm (python-duniterpy)[arguments]: Build and install
  documentation.
2018-12-19 23:49:15 +01:00
Nicolas Goaziou 4b3d6b899f
gnu: python-duniterpy: Update to 0.51.0.
* gnu/packages/finance.scm (python-duniterpy): Update to 0.51.0.
2018-12-19 23:48:13 +01:00
Ricardo Wurmus 80eebee9f7
ui: Report profile hooks separately.
* guix/ui.scm (profile-hook-derivation?): New procedure.
(show-what-to-build): Distinguish among BUILD derivations that match
'profile-hook-derivation?'.  Report them separately.
* guix/status.scm (hook-message): New procedure.
(print-build-event): Display profile hooks with readable hook name.
* guix/profiles.scm (info-dir-file, ghc-package-cache-file,
ca-certificate-bundle, glib-schemas, gtk-icon-themes, gtk-im-modules,
xdg-desktop-database, xdg-mime-database, fonts-dir-file, manual-database):
Augment derivation with "type" and "hook" properties.
2018-12-19 23:46:38 +01:00
Oleg Pykhalov 0485717ee9
services: zabbix-front-end: Improve hint and error messages.
* gnu/services/monitoring.scm (zabbix-front-end-config): Improve hint and
error messages.
2018-12-19 21:15:12 +03:00
Hartmut Goebel 9a50cedc6b
gnu: plasma-framework: Fix build.
* gnu/packages/plasma-framework.scm (plasma-framework)[inputs]: Add
  qtquickcontrols2.
2018-12-19 18:54:56 +01:00
Christopher Lemmer Webber af8c90e862
stumpwm: Add comment saying patch can be removed in next release.
* gnu/packages/lisp.scm (stumpwm): Add comment saying patch can be removed in
  next release.
2018-12-19 09:47:52 -05:00
Pierre Langlois dba83d7d14
gnu: stumpwm: Fix gnew command.
The new release of StumpWM broken the interactive 'gnew' command.  It was
fixed upstream [0] and will be part of the next release.

0: https://github.com/stumpwm/stumpwm/pull/538

* gnu/packages/patches/stumpwm-fix-broken-read-one-line.patch: New file.
* gnu/packages/lisp.scm (stumpwm)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-12-19 09:45:39 -05:00
Alex Vong 38abef124b
gnu: sqlite: Replace with 3.26.0 [security fixes].
Fixes <https://bugs.gnu.org/33751>.
Reported by Marius Bakke <mbakke@fastmail.com>.

* gnu/packages/databases.scm (sqlite-3.26.0): New public variable.
(sqlite)[replacement]: Use it.
(sqlite-with-fts5): Use 'package/inherit'.
(sqlite-with-column-metadata): Likewise.

Modified-by: Mark H Weaver <mhw@netris.org>
2018-12-18 20:20:16 -05:00
Ludovic Courtès a934e9fc1c
vm: Re-enable KVM on i386.
The workaround is apparently no longer needed with Linux-libre 4.19.2
in the host.

* gnu/build/vm.scm (load-in-linux-vm): Remove special case for
"qemu-system-i386", thereby re-enabling KVM.
2018-12-19 00:14:00 +01:00
Ludovic Courtès 439a4c7511
gnu: guix: Update to 5de5f81.
* gnu/packages/package-management.scm (guix): Update to 5de5f81.
2018-12-19 00:14:00 +01:00
Alex Kost bc7743b99e
gnu: emacs-build-farm: Update to 0.2.2.
* gnu/packages/emacs.scm (emacs-build-farm): Update to 0.2.2.
2018-12-19 00:33:05 +03:00
Alex Kost c7d67b894c
gnu: emacs-bui: Update to 1.2.1.
* gnu/packages/emacs.scm (emacs-bui): Update to 1.2.1.
2018-12-19 00:33:05 +03:00
Julien Lepiller 34d5314e9c
gnu: ocaml-lambda-term: Use dune-build-system.
* gnu/packages/ocaml.scm (ocaml-lambda-term): Use dune-build-system.
2018-12-18 22:17:12 +01:00
Julien Lepiller 426e629e0c
gnu: ocaml-camomile: Use dune-build-system.
* gnu/packages/ocaml.scm (ocaml-camomile): Use dune-build-system.
2018-12-18 22:16:57 +01:00
Julien Lepiller d6fa189eef
gnu: ocaml-re: Use dune-build-system.
* gnu/packages/ocaml.scm (ocaml-re): Use dune-build-system.
2018-12-18 22:16:55 +01:00
Julien Lepiller 48b27902de
gnu: ocaml-cppo: Use dune-build-system.
* gnu/packages/ocaml.scm (ocaml-cppo): Use dune-build-system.
2018-12-18 22:16:52 +01:00
Julien Lepiller 5d0712638f
gnu: ocaml-lwt-log: Use dune-build-system.
* gnu/packages/ocaml.scm (ocaml-lwt-log): Use dune-build-system.
2018-12-18 22:16:50 +01:00
Julien Lepiller f880b03bca
gnu: ocaml-lwt: Use dune-build-system.
* gnu/packages/ocaml.scm (ocaml-lwt): Use dune-build-system.
2018-12-18 22:16:48 +01:00
Julien Lepiller f93246a541
gnu: ocaml-bitstring: Use dune-build-system.
* gnu/packages/ocaml.scm (ocaml-bitstring): Use dune-build-system.
(ocaml4.02-bitstring)[build-system]: Use ocaml-build-system explicitly.
2018-12-18 22:16:45 +01:00
Julien Lepiller 59fa09e1cd
gnu: ocaml-ppx-tools-versioned: Use dune-build-system.
* gnu/packages/ocaml.scm (ocaml-ppx-tools-versioned): Use
dune-build-system.  Remove duplicate definition.
2018-12-18 22:16:41 +01:00
Julien Lepiller effc8325a5
gnu: ocaml-migrate-parsetree: Use dune-build-system.
* gnu/packages/ocaml.scm (ocaml-migrate-parsetree): Use
dune-build-system.
2018-12-18 22:16:37 +01:00
Julien Lepiller 6e8986c838
build: Add dune-build-system.
* guix/build/dune-build-system.scm,
  guix/build-system/dune.scm: New files.
* Makefile.am (MODULES): Add them.
* doc/guix.texi (Build Systems): Document dune-build-system.
* guix/build-system/ocaml.scm (lower, default-findlib, default-ocaml): Export
them.
(package-with-explicit-ocaml): Also transform packages built with
dune-build-system.
2018-12-18 22:16:23 +01:00
Nam Nguyen d852cf9e33
gnu: Add sct.
* gnu/packages/xdisorg.scm (sct): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-12-18 17:23:39 +01:00
Ludovic Courtès 5de5f81845
file-systems: Have the emergency REPL output to /dev/console.
This fixes a bug whereby all emergency REPL output would go to /dev/klog
and thus, each line would be prefixed by "[12324.432] shepherd[1]: ".

* gnu/build/file-systems.scm (check-file-system): Wrap 'start-repl' call
in 'with-output-to-file'.
2018-12-18 16:04:26 +01:00
Ludovic Courtès 6ea6e1476f
file-systems: Spawn a REPL only when interaction is possible.
Fixes <https://bugs.gnu.org/23697>.
Reported by Jan Nieuwenhuizen <janneke@gnu.org>.

* gnu/build/file-systems.scm (check-file-system): Call 'start-repl' only
if current-input-port passes 'isatty?'.
* gnu/services/shepherd.scm (shepherd-configuration-file): After
'for-each' expression, call 'redirect-port'.
* gnu/tests/base.scm (run-basic-test)["stdin is /dev/null"]: New test.
2018-12-18 16:04:26 +01:00
Ludovic Courtès 65c8a04370
doc: Remove stale reference to 'hydra.gnu.org'.
Reported by Thomas Schmitt <scdbackup@gmx.net>.

* doc/guix.texi (Binary Installation): Refer to SUBSTITUTE-SERVER, not
to 'hydra.gnu.org'.
2018-12-18 16:04:25 +01:00
swedebugia bd5a81f9b8
guix system: Clarify the three strategies available.
* guix/scripts/system.scm (show-help): Clarify the three choices.
* doc/guix.texi (Invoking guix system): Add 3 @cindex to make on-error=strategy
easier to find.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-12-18 16:04:25 +01:00
Ludovic Courtès 4d55431d89
doc: Fix typo in '.guix-channel' example.
* doc/guix.texi (Channels): Remove extra quote in '.guix-channel'
example.
2018-12-18 16:04:25 +01:00
Timothy Sample 6616a35202
ui: Report file names in 'system-error' exceptions from 'execlp'.
Fixes <https://bugs.gnu.org/33755>.

* guix/ui.scm (apply-formals): New macro.
(execlp): New error-reporting wrapper.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-12-18 16:04:25 +01:00
Rutger Helling 83d4da1211
gnu: libostree: Update to 2018.9.1.
* gnu/packages/package-management.scm (libostree): Update to 2018.9.1.
2018-12-18 14:53:43 +01:00
Jelle Licht b8d5fbd86f
doc: Replace 'https-port' with 'listen' in nginx php example.
* doc/guix.texi (Web Services): Update accordingly.
2018-12-18 14:50:47 +01:00
Jelle Licht 232cc1001d
gnu: emacs-daemons: Update to 2.0.0.
* gnu/packages/emacs.scm (emacs-daemons): Update to 2.0.0.
2018-12-18 11:34:41 +01:00
Pierre Neidhardt ad01ab1610
gnu: emacs-helpful: Update to 0.15.
* gnu/packages/emacs.scm (emacs-helpful): Update to 0.15.
2018-12-18 10:40:54 +01:00
Pierre Neidhardt 809b959680
gnu: emacs-evil-collection: Update to 20181218.
* gnu/packages/emacs.scm (emacs-evil-collection): Update to 20181218.
2018-12-18 09:33:05 +01:00
Rutger Helling c340d8dc74
gnu: git: Update to 2.20.1.
* gnu/packages/version-control.scm (git): Update to 2.20.1.
2018-12-18 09:26:17 +01:00
Arun Isaac 01cb4d4757
gnu: ansible: Work around issues with Guix wrapper scripts.
* gnu/packages/admin.scm (ansible)[source]: Remove
ansible-wrap-program-hack.patch from patches.
[arguments]: Add hide-wrapping and fix-symlinks phases.
* gnu/packages/patches/ansible-wrap-program-hack.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Unregister it.
2018-12-18 11:20:56 +05:30
Mark H Weaver 6a9659f5d8
gnu: linux-libre: Update to 4.19.10.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.19.10.
(%linux-libre-hash): Update hash.
2018-12-17 23:36:03 -05:00