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44541 Commits

Author SHA1 Message Date
Ricardo Wurmus 371c73b2e6
gnu: r-rhisat2: Update to 1.0.1. 
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.0.1.
 2019-05-20 15:05:48 +02:00
Ricardo Wurmus b8f6b813c9
gnu: r-regioner: Update to 1.16.2. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.2.
 2019-05-20 15:04:56 +02:00
Ricardo Wurmus 7a94438130
gnu: r-scater: Update to 1.12.1. 
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.12.1.
 2019-05-20 12:00:38 +02:00
Ricardo Wurmus 461fb28ac5
gnu: r-seurat: Update to 3.0.1. 
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.0.1.
 2019-05-20 12:00:37 +02:00
Ricardo Wurmus d94c698a13
gnu: r-maldiquant: Update to 1.19.3. 
* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.19.3.
 2019-05-20 12:00:37 +02:00
Ricardo Wurmus 7c97f45700
gnu: r-edger: Update to 3.26.1. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.1.
 2019-05-20 12:00:37 +02:00
Ricardo Wurmus 2e2e8d4f9e
gnu: r-dalex: Update to 0.4. 
* gnu/packages/cran.scm (r-dalex): Update to 0.4.
 2019-05-20 12:00:37 +02:00
Ricardo Wurmus 12242ffb4a
gnu: r-dqrng: Update to 0.2.1. 
* gnu/packages/cran.scm (r-dqrng): Update to 0.2.1.
 2019-05-20 12:00:37 +02:00
Ricardo Wurmus 2785e61558
gnu: r-repr: Update to 1.0.1. 
* gnu/packages/cran.scm (r-repr): Update to 1.0.1.
 2019-05-20 12:00:37 +02:00
Ricardo Wurmus ecf4ccb944
gnu: r-gamlss-dist: Update to 5.1-4. 
* gnu/packages/cran.scm (r-gamlss-dist): Update to 5.1-4.
 2019-05-20 12:00:37 +02:00
Ricardo Wurmus 9e7526ada2
gnu: r-fields: Update to 9.8-1. 
* gnu/packages/cran.scm (r-fields): Update to 9.8-1.
 2019-05-20 12:00:36 +02:00
Ricardo Wurmus 13f9e5d1be
gnu: r-bigrquery: Update to 1.1.1. 
* gnu/packages/cran.scm (r-bigrquery): Update to 1.1.1.
 2019-05-20 12:00:36 +02:00
Ricardo Wurmus cb4a6e67da
gnu: r-grimport: Update to 0.9-2. 
* gnu/packages/cran.scm (r-grimport): Update to 0.9-2.
 2019-05-20 12:00:36 +02:00
Ricardo Wurmus c468cf3094
gnu: r-rcppannoy: Update to 0.0.12. 
* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.12.
 2019-05-20 12:00:36 +02:00
Ricardo Wurmus 1aeb0b8de2
gnu: r-ggeffects: Update to 0.10.0. 
* gnu/packages/cran.scm (r-ggeffects): Update to 0.10.0.
 2019-05-20 12:00:36 +02:00
Ricardo Wurmus 3585740f14
gnu: r-raster: Update to 2.9-5. 
* gnu/packages/cran.scm (r-raster): Update to 2.9-5.
 2019-05-20 12:00:36 +02:00
Ricardo Wurmus 720748957e
gnu: r-flextable: Update to 0.5.4. 
* gnu/packages/cran.scm (r-flextable): Update to 0.5.4.
 2019-05-20 12:00:36 +02:00
Ricardo Wurmus 70a4748bc7
gnu: r-insight: Update to 0.3.0. 
* gnu/packages/cran.scm (r-insight): Update to 0.3.0.
 2019-05-20 12:00:35 +02:00
Ricardo Wurmus fa8d78df4a
gnu: r-snakecase: Update to 0.10.0. 
* gnu/packages/cran.scm (r-snakecase): Update to 0.10.0.
 2019-05-20 12:00:35 +02:00
Ricardo Wurmus 394d118dea
gnu: r-zip: Update to 2.0.2. 
* gnu/packages/cran.scm (r-zip): Update to 2.0.2.
 2019-05-20 12:00:35 +02:00
Ricardo Wurmus 756f2d3527
gnu: r-xfun: Update to 0.7. 
* gnu/packages/cran.scm (r-xfun): Update to 0.7.
 2019-05-20 12:00:35 +02:00
Ricardo Wurmus 372f65ad94
gnu: r-mice: Update to 3.5.0. 
* gnu/packages/cran.scm (r-mice): Update to 3.5.0.
 2019-05-20 12:00:35 +02:00
Ricardo Wurmus 1541f0a00c
gnu: r-gower: Update to 0.2.1. 
* gnu/packages/cran.scm (r-gower): Update to 0.2.1.
 2019-05-20 12:00:35 +02:00
Ricardo Wurmus 7e8ac56afa
gnu: r-progress: Update to 1.2.2. 
* gnu/packages/cran.scm (r-progress): Update to 1.2.2.
 2019-05-20 12:00:35 +02:00
Ricardo Wurmus bd9f147974
gnu: r-reprex: Update to 0.3.0. 
* gnu/packages/cran.scm (r-reprex): Update to 0.3.0.
 2019-05-20 12:00:35 +02:00
Ricardo Wurmus c86da03a11
gnu: r-amap: Update to 0.8-17. 
* gnu/packages/cran.scm (r-amap): Update to 0.8-17.
[inputs]: Move gfortran from here...
[native-inputs]: ...to here.
 2019-05-20 12:00:34 +02:00
Ricardo Wurmus 089ac9af76
gnu: r-dendextend: Update to 1.12.0. 
* gnu/packages/cran.scm (r-dendextend): Update to 1.12.0.
[propagated-inputs]: Remove r-fpc and r-whisker.
 2019-05-20 12:00:34 +02:00
Ricardo Wurmus 8bfc6dc507
gnu: r-rvest: Update to 0.3.4. 
* gnu/packages/cran.scm (r-rvest): Update to 0.3.4.
 2019-05-20 12:00:34 +02:00
Ricardo Wurmus 524c71889b
gnu: r-vegan: Update to 2.5-5. 
* gnu/packages/cran.scm (r-vegan): Update to 2.5-5.
 2019-05-20 12:00:34 +02:00
Ricardo Wurmus 33ba81359c
gnu: r-pillar: Update to 1.4.0. 
* gnu/packages/cran.scm (r-pillar): Update to 1.4.0.
[propagated-inputs]: Add r-vctrs.
 2019-05-20 12:00:34 +02:00
Ricardo Wurmus 6004bc1a8f
gnu: Add r-vctrs. 
* gnu/packages/cran.scm (r-vctrs): New variable.
 2019-05-20 12:00:34 +02:00
Ricardo Wurmus c87a335860
gnu: Add r-zeallot. 
* gnu/packages/cran.scm (r-zeallot): New variable.
 2019-05-20 12:00:34 +02:00
Ricardo Wurmus 154c2b0bc5
gnu: r-tinytex: Update to 0.13. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.13.
 2019-05-20 12:00:33 +02:00
Ricardo Wurmus 5da9918ded
gnu: r-heatmaply: Update to 0.16.0. 
* gnu/packages/cran.scm (r-heatmaply): Update to 0.16.0.
[propagated-inputs]: Remove r-gplots and r-knitr.
 2019-05-20 12:00:33 +02:00
Ricardo Wurmus 40b2f7bc0e
gnu: r-xcms: Update to 3.6.1. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.6.1.
 2019-05-20 12:00:33 +02:00
Ricardo Wurmus b9a7f9c065
gnu: r-sn: Update to 1.5-4. 
* gnu/packages/statistics.scm (r-sn): Update to 1.5-4.
 2019-05-20 12:00:33 +02:00
Ricardo Wurmus b02a960275
gnu: r-robustbase: Update to 0.93-5. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-5.
 2019-05-20 12:00:33 +02:00
Ricardo Wurmus 89428ef7fb
gnu: r-ggthemes: Update to 4.2.0. 
* gnu/packages/statistics.scm (r-ggthemes): Update to 4.2.0.
 2019-05-20 12:00:33 +02:00
Ricardo Wurmus b1b9212d1a
gnu: r-hexbin: Update to 1.27.3. 
* gnu/packages/statistics.scm (r-hexbin): Update to 1.27.3.
 2019-05-20 12:00:33 +02:00
Ricardo Wurmus c5f6d1798c
gnu: r-segmented: Update to 0.5-4.0. 
* gnu/packages/statistics.scm (r-segmented): Update to 0.5-4.0.
 2019-05-20 12:00:32 +02:00
Ricardo Wurmus 179a477cd7
gnu: r-rcpparmadillo: Update to 0.9.400.3.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.400.3.0.
 2019-05-20 12:00:32 +02:00
Ricardo Wurmus 7762b5825f
gnu: r-batchjobs: Update to 1.8. 
* gnu/packages/statistics.scm (r-batchjobs): Update to 1.8.
 2019-05-20 12:00:32 +02:00
Ricardo Wurmus 9a6da53fc7
gnu: r-dplyr: Update to 0.8.1. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.8.1.
 2019-05-20 12:00:32 +02:00
Ricardo Wurmus bf5320aaf5
gnu: r-nlme: Update to 3.1-140. 
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-140.
 2019-05-20 12:00:32 +02:00
Ricardo Wurmus ee7e2ebf61
gnu: r-svglite: Update to 1.2.2. 
* gnu/packages/statistics.scm (r-svglite): Update to 1.2.2.
[native-inputs]: Move r-rcpp from here...
[propagated-inputs]: ...to here.
 2019-05-20 12:00:28 +02:00
Ludovic Courtès 996ecaf64e
maint: update-NEWS: Track "gcc-toolchain", not "gcc". 
This is a followup to d78010b81e.

* build-aux/update-NEWS.scm (write-packages-updates)[important]: Replace
"gcc" by "gcc-toolchain".
 2019-05-20 11:50:21 +02:00
Ludovic Courtès 99f47b53f7
Merge branch 'version-1.0.1' 2019-05-20 11:48:57 +02:00
Pierre Neidhardt 8d036f3ecf
gnu: youtube-dl: Update to 2019.05.11. 
* gnu/packages/video.scm (youtube-dl): Update to 2019.05.11.
 2019-05-20 11:15:50 +02:00
Pierre Neidhardt 6e0c5fec83
gnu: emacs-evil-collection: Update to 20190519. 
* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 20190519.
 2019-05-20 11:14:33 +02:00
Tobias Geerinckx-Rice 0f469c172e
gnu: xf86-video-voodoo: Ship patch locally. 
The ORIGIN patch has been modified in place, probably *wild guessing
sounds* by a server-side cgit update.

* gnu/packages/xorg.scm (xf86-video-voodoo)[source]: Use SEARCH-PATCHES.
* gnu/packages/patches/xf86-video-voodoo-pcitag.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-05-20 05:02:26 +02:00