a655d504aa
scripts: environment: Only rewrite user-specified mappings.
...
* guix/scripts/environment.scm (launch-environment/container): Only
apply override-user-mappings to user-mappings and cwd. Do not apply to
network configuration mapping and inputs.
2019-07-08 10:33:19 -04:00
0971f8bd88
gnu: Remove r-biocinstaller.
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It requires R < 3.6 and is no longer supported.
* gnu/packages/bioinformatics.scm (r-biocinstaller): Define as
deprecated in favour of r-biocmanager.
2019-07-08 16:13:11 +02:00
1042e3481d
gnu: r-xbioc: Update to 0.1.16-1.6ff0670.
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This is needed to deprecate r-biocinstaller, which is no longer
distributed.
* gnu/packages/bioinformatics.scm (r-xbioc): Update to 0.1.16-1.6ff0670.
[propagated-inputs]: Replace deprecated r-biocinstaller with
r-biocmanager.
2019-07-08 16:11:55 +02:00
ddfb62807d
gnu: cmh: Fix build.
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This follows up on commit 1de48e8f8a
2019-07-08 15:48:07 +02:00
69e3512b7c
gnu: libomp: Download over HTTPS.
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* gnu/packages/llvm.scm (libomp)[source]: Use HTTPS.
2019-07-08 15:33:35 +02:00
e2170c3192
gnu: libomp: Fix source hash.
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This is a follow-up to commit c5296e205b
2019-07-08 15:33:35 +02:00
61242625ad
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.4.7.
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* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
Update to 3.4.7.
2019-07-08 15:33:35 +02:00
377b0501c4
gnu: Add emacs-polymode-org.
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* gnu/packages/emacs-xyz.scm (emacs-polymode-org): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-08 13:05:56 +02:00
85630d8042
gnu: emacs-polymode: Update to 0.2.
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* gnu/packages/emacs-xyz.scm (emacs-polymode): Update to 0.2.
[source]: Change URL of Git repository to Polymode GitHub project.
[homepage]: Change URL to polymode GitHub project.
[description]: Realign text.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-08 13:05:56 +02:00
88a29b5cd3
gnu: i3blocks: Update to ec050e7.
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* gnu/packages/wm.scm (i3blocks): Update to ec050e7.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-08 13:05:56 +02:00
a55dd25d3e
gnu: dosfstools: Enable compat symlinks.
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Enable compatibility symlinks to provide commands such as `mkfs.vfat`.
* gnu/packages/disk.scm (dosfstools)[arguments]: Pass
"--enable-compat-symlinks" to configure.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-08 13:05:56 +02:00
b9a1d74de5
gnu: wireservice: New wireservice-package macro.
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Replace the parent 'base-package' variable with a 'wireservice-package' macro
that includes all common package fields.
* gnu/packages/wireservice.scm (base-package): Delete.
(wireservice-package): New macro.
(python-leather, python-agate, python-agate-sql, python-agate-dbf,
python-agate-excel): Use wireservice-package.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-08 13:05:55 +02:00
cdf689471a
channels: Key cached channel derivations by system.
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Previously, the channel instance to derivation mapping would be
independent of the system. Thus, building the same channel instance for
several different systems would always return the derivation that was
first computed.
This is a followup to c3ab921eed
2019-07-08 13:05:55 +02:00
8747477deb
gnu: gobject-introspection: Update absolute-shlib-path.patch.
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Incorporate some changes from nixpkgs to the gobject-introspection package
patches. This is motivated by looking at issues with libsoup and lollypop.
These changes mean that the share/gir-1.0/Soup-2.4.gir file within
libsoup (and the corresponding binary typelib) references libsoup-2.4.so.1
with an absolute filename, whereas previously, the filename wasn't absolute.
With an absolute filename in the typelib, loading libsoup from lollypop should
work.
* gnu/packages/patches/gobject-introspection-absolute-shlib-path.patch:
Incorporate changes from nixpkgs.
2019-07-08 08:42:29 +01:00
c7b757c46c
gnu: gama: Update to 2.06.
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* gnu/packages/gps.scm (gama): Update to 2.06.
2019-07-08 10:38:23 +03:00
d335ef51d7
gnu: diffoscope: Update to 116.
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* gnu/packages/package-management (diffoscope): Update to 116.
2019-07-07 18:57:28 -07:00
a7ed2d534c
gnu: python-pytest: Update to 4.4.2.
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This is necessary to fix a test failure on 32-bit platforms in 4.4.1.
* gnu/packages/check.scm (python-pytest): Update to 4.4.2.
2019-07-08 00:58:31 +02:00
e5731c0382
gnu: python-pluggy: Update to 0.11.0.
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* gnu/packages/python-xyz.scm (python-pluggy): Update to 0.11.0.
2019-07-08 00:58:09 +02:00
625801f500
gnu: webkitgtk: Build with Python 3.
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* gnu/packages/webkit.scm (webkitgtk)[native-inputs]: Change PYTHON-2 to
PYTHON-WRAPPER.
2019-07-08 00:37:03 +02:00
0403b04d76
gnu: jalv: Remove GCC5 workaround.
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* gnu/packages/audio.scm (jalv)[arguments]: Remove <#:phases>.
2019-07-07 23:27:37 +02:00
6fe808f4c3
gnu: mesa: Use the "release" Meson build type.
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* gnu/packages/gl.scm (mesa)[arguments]: Add <#:build-type>.
2019-07-07 22:05:34 +02:00
f826ac4704
gnu: doxygen: Build with Python 3.
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* gnu/packages/documentation.scm (doxygen)[native-inputs]: Change PYTHON-2 to PYTHON.
2019-07-07 20:07:22 +02:00
ff6850490f
gnu: doxygen: Don't build against special Flex variant.
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* gnu/packages/documentation.scm (doxygen)[native-inputs]: Change FLEX-2.6.1
to FLEX.
2019-07-07 20:00:21 +02:00
794c773d0c
gnu: libinput: Use the 'release' Meson build type.
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* gnu/packages/freedesktop.scm (libinput)[arguments]: Add <#:build-type>.
2019-07-07 19:19:39 +02:00
c43b090326
build-system/meson: Enable compiler optimizations.
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* guix/build-system/meson.scm (meson-build)[#:build-type]: Set to 'debugoptimized'.
2019-07-07 19:14:04 +02:00
f7e25e2ec7
gnu: libpsl: Python is a native input.
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* gnu/packages/web.scm (libpsl)[inputs]: Move PYTHON-WRAPPER ...
[native-inputs]: ... here.
2019-07-07 18:55:57 +02:00
c4fa39188a
gnu: graphite2: Build against Python 3.
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Previously, the Python tests were skipped, because they require Python 3.
* gnu/packages/fontutils.scm (graphite2)[arguments]: New field.
[native-inputs]: Change PYTHON-2 and PYTHON2-FONTTOOLS to PYTHON and PYTHON-FONTTOOLS.
2019-07-07 18:53:32 +02:00
b0dc2454cc
gnu: zziplib: Don't run failing tests.
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* gnu/packages/compression.scm (zziplib)[arguments]: Set <#:test-target>.
2019-07-07 18:38:19 +02:00
d0a52e65b5
gnu: zziplib: Don't use unstable tarball.
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* gnu/packages/compression.scm (zziplib)[source]: Change to GIT-FETCH.
[argumnents]: New field.
2019-07-07 18:38:19 +02:00
ee3a4d3678
gnu: libpsl: Build against Python 3.
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* gnu/packages/web.scm (libpsl)[inputs]: Change PYTHON-2 to PYTHON-WRAPPER.
2019-07-07 18:38:19 +02:00
2c886af911
gnu: ninja: Python is a regular input.
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Ninja uses Python at run time, so it must not be a native input.
* gnu/packages/ninja.scm (ninja)[native-inputs]: Change to ...
[inputs]: ... this.
2019-07-07 18:38:19 +02:00
b78491f857
gnu: ninja: Build against Python 3.
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* gnu/packages/ninja.scm (ninja)[native-inputs]: Change PYTHON-2 to PYTHON-WRAPPER.
2019-07-07 18:38:19 +02:00
cf3f7aa197
gnu: libevent: Use Python 3 for event_rpcgen.py.
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* gnu/packages/libevent.scm (libevent)[inputs]: Change PYTHON-2 to PYTHON-WRAPPER.
2019-07-07 18:38:18 +02:00
d7b63ba92d
gnu: itstool: Update to 2.0.6.
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* gnu/packages/glib.scm (itstool): Update to 2.0.6.
[inputs]: Change PYTHON2-LIBXML and PYTHON-2 to PYTHON-LIBXML and PYTHON.
* gnu/packages/gnome.scm (totem)[inputs]: Change PYTHON-2 to PYTHON.
2019-07-07 18:38:18 +02:00
53ffc043af
gnu: cURL: Build against Python 3.
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* gnu/packages/curl.scm (curl)[native-inputs]: Change PYTHON-2 to PYTHON-WRAPPER.
2019-07-07 18:38:11 +02:00
ac135287d2
gnu: icu4c: Enable tests on i686.
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* gnu/packages/icu4c.scm (icu4c)[arguments]: Don't override <#:tests?>.
2019-07-07 16:55:10 +02:00
a4c38f812c
gnu: icu4c: Use 'python-minimal' for tests.
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* gnu/packages/icu4c.scm (icu4c)[native-inputs]: Change PYTHON to
PYTHON-MINIMAL.
2019-07-07 16:54:15 +02:00
fcb5493793
gnu: Python: Avoid needless reference on coreutils.
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* gnu/packages/python.scm (python-2.7)[arguments]: Pass "INSTALL" and
"MKDIR_P" in <#:configure-flags>.
2019-07-07 16:51:26 +02:00
4f5fe46388
gnu: commencement: Fix Python build on non-x86 platforms.
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* gnu/packages/commencement.scm (python-boot0)[version, source]: Downgrade to 3.5.7.
[arguments]: Remove <#:make-flags>. Add <#:phases>.
[native-inputs]: Remove artifical dependency on PKG-CONFIG.
2019-07-07 16:32:53 +02:00
bf187d92e3
gnu: Add csvkit.
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* gnu/packages/wireservice.scm (csvkit): New variable.
* gnu/packages/patches/csvkit-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-07 15:48:20 +02:00
213b05f04e
gnu: Add python-agate-excel.
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* gnu/packages/wireservice.scm (python-agate-excel): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-07 15:48:20 +02:00
f1122a2c91
gnu: Add python-agate-dbf.
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* gnu/packages/wireservice.scm (python-agate-dbf): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-07 15:48:20 +02:00
9b2850c845
gnu: Add python-agate-sql.
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* gnu/packages/wireservice.scm (python-agate-sql): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-07 15:48:20 +02:00
dc835e75ce
gnu: Add python-agate.
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* gnu/packages/wireservice.scm (python-agate): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-07 15:48:20 +02:00
451742bcf6
gnu: Add python-leather.
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* gnu/packages/wireservice.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-07 15:48:20 +02:00
edeb04bfb7
gnu: Add python-dbfread.
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* gnu/packages/python-xyz.scm (python-dbfread): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-07 15:48:20 +02:00
450d5dc289
gnu: Add python-crate.
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* gnu/packages/databases.scm (python-crate): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-07 15:48:20 +02:00
0d5b7ea11f
gnu: Add python-pytimeparse.
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* gnu/packages/time.scm (python-pytimeparse): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-07 15:48:19 +02:00
6543bc80b4
gnu: Add python-slugify.
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* gnu/packages/python-web.scm (python-slugify): New variable.
* gnu/packages/patches/python-slugify-depend-on-unidecode.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-07 15:48:19 +02:00
e41ba8606f
gnu: Add emacs-moe-theme-el.
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* gnu/packages/emacs-xyz.scm (emacs-moe-theme-el): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-07 15:48:19 +02:00
Carl Dong