5e5d6613a3
download: Use ungrafted tools in 'url-fetch/tarbomb' and 'url-fetch/zipbomb'.
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Fixes <https://bugs.gnu.org/31085 >.
Reported by Diego Nicola Barbato <dnbarbato@posteo.de>.
* guix/download.scm (url-fetch/tarbomb): Pass #:graft? #f to
'gexp->derivation'.
(url-fetch/zipbomb): Likewise.
2018-04-23 15:25:56 +02:00
de7f03ce0a
gnu: Add runc.
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* gnu/packages/virtualization.scm (runc): New variable.
2018-04-23 11:22:58 +08:00
0ed7498a46
gnu: Add src.
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* gnu/packages/version-control.scm (src): New variable.
2018-04-23 11:22:58 +08:00
01224157b7
gnu: Add ocproxy.
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* gnu/packages/vpn.scm (ocproxy): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-04-22 23:50:49 +02:00
c51e592d6c
gnu: Add emacs-elisp-slime-nav.
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* gnu/packages/emacs.scm (emacs-elisp-slime-nav): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-04-22 23:50:49 +02:00
479c0e3f60
build: Fix possible race condition in 'test-env'.
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Reported by Mark H Weaver <mhw@netris.org>.
* build-aux/test-env.in: Add 'guile' invocation before 'guix download'
invocation to make sure 'guix-daemon' is listening.
2018-04-22 23:50:49 +02:00
b8a251d76e
gnu: libfive: Snippet returns a Boolean.
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Reported by Mark H Weaver <mhw@netris.org>.
* gnu/packages/engineering.scm (libfive)[source](snippet): Return #t.
2018-04-22 23:50:48 +02:00
3d7f9cbe75
gnu: pigx-chipseq: Update to 0.0.15.
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* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.15.
2018-04-22 23:00:51 +02:00
3ae45eb435
audacity: Update to 2.2.2.
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* gnu/packages/audio.scm (audacity): Update to 2.2.2.
2018-04-22 13:43:38 -04:00
5c1052039e
gnu: gcompris-qt: Update to 0.90.
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* gnu/packages/education.scm (gcompris-qt): Update to 0.90.
[source, home-page]: Use https.
[arguments]: Add 'wrap-executable phase to declare the QT_PLUGIN_PATH
and QML2_IMPORT_PATH without needing propagated inputs.
[native-inputs]: Add qttools.
[inputs]: Remove qt, add qtbase, qtdeclarative, qtgraphicaleffects,
qtmultimedia, qtquickcontrols, qtsensors, qtsvg, qtxmlpatterns.
2018-04-22 15:57:22 +03:00
f347c24acc
gnu: freeimage: Use bundled libjxr.
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* gnu/packages/image.scm (freeimage)[source]: Don't delete bundled
LibJXR directory.
[arguments]: Modify make-flags to not include external jxrlib.
[inputs]: Remove libjxr.
* gnu/packages/patches/freeimage-unbundle.patch: Modify to not unbundle
libjxr.
2018-04-22 12:20:15 +03:00
f1104d9009
services: Add dhcpd-service-type and <dhcpd-configuration>.
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* doc/guix.texi (Networking Services): Document it.
* gnu/services/networking.scm (dhcpd-service-type): Add it.
(dhcpd-configuration, dhcpd-configuration?): Add it.
(dhcpd-configuration-package): Add it.
(dhcpd-configuration-config-file): Add it.
(dhcpd-configuration-version): Add it.
(dhcpd-configuration-run-directory): Add it.
(dhcpd-configuration-lease-file): Add it.
(dhcpd-configuration-pid-file): Add it.
(dhcpd-configuration-interfaces): Add it.
* gnu/tests/networking.scm (minimal-dhcpd-v4-config-file)
(dhcpd-v4-configuration, %dhcpd-os, run-dhcpd-test, %test-dhcpd): New
variables.
2018-04-21 23:46:30 -07:00
e33498b868
gnu: cran.scm: Add missing module.
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This is a follow-up to 9ebfdcd36c
2018-04-22 09:43:36 +03:00
2cf42ec611
gnu: r-httpuv: Update to 1.4.1.
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* gnu/packages/web.scm (r-httpuv): Update to 1.4.1.
2018-04-21 23:07:52 +02:00
c36ce47635
gnu: r-seurat: Update to 2.3.0.
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* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.0.
[propagated-inputs]: Add r-cluster, r-dosnow, r-fitdistrplus, r-foreach,
r-lmtest, r-png, and r-rann.
2018-04-21 23:07:52 +02:00
3cf9ae2f75
gnu: Add r-dosnow.
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* gnu/packages/cran.scm (r-dosnow): New variable.
2018-04-21 23:07:52 +02:00
6ab97ed56a
gnu: r-lambda-r: Update to 1.2.2.
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* gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.2.
[arguments]: Remove.
[native-inputs]: Remove.
[propagated-inputs]: Add r-formatr.
2018-04-21 23:07:52 +02:00
5150a52d03
gnu: r-httpuv: Update to 1.4.0.
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* gnu/packages/web.scm (r-httpuv): Update to 1.4.0.
[propagated-inputs]: Add r-bh, r-later, and r-promises.
2018-04-21 23:07:52 +02:00
d9d66ba963
gnu: Add r-promises.
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* gnu/packages/cran.scm (r-promises): New variable.
2018-04-21 23:07:52 +02:00
284179bbb3
gnu: Add r-later.
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* gnu/packages/cran.scm (r-later): New variable.
2018-04-21 23:07:52 +02:00
500224cb4c
gnu: r-car: Update to 3.0-0.
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* gnu/packages/statistics.scm (r-car): Update to 3.0-0.
[propagated-inputs]: Add r-abind, r-cardata, r-lme4, r-maptools, r-nlme, and
r-rio.
2018-04-21 23:07:52 +02:00
08dac3d9e6
gnu: Add r-maptools.
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* gnu/packages/cran.scm (r-maptools): New variable.
2018-04-21 23:07:52 +02:00
c9920f2597
gnu: Add r-rio.
...
* gnu/packages/cran.scm (r-rio): New variable.
2018-04-21 23:07:52 +02:00
4b1f7a3e90
gnu: Add r-openxlsx.
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* gnu/packages/cran.scm (r-openxlsx): New variable.
2018-04-21 23:07:52 +02:00
0edd2fd186
gnu: r-ggridges: Update to 0.5.0.
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* gnu/packages/cran.scm (r-ggridges): Update to 0.5.0.
[propagated-inputs]: Add r-withr.
2018-04-21 23:07:52 +02:00
4f18423358
gnu: r-ddalpha: Update to 1.3.2.
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* gnu/packages/cran.scm (r-ddalpha): Update to 1.3.2.
[propagated-inputs]: Add r-geometry.
2018-04-21 23:07:52 +02:00
9604429d7b
gnu: Add r-geometry.
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* gnu/packages/cran.scm (r-geometry): New variable.
2018-04-21 23:07:52 +02:00
ce4e81cb86
gnu: Add r-magic.
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* gnu/packages/cran.scm (r-magic): New variable.
2018-04-21 23:07:52 +02:00
f1c7a24280
gnu: Add r-cardata.
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* gnu/packages/statistics.scm (r-cardata): New variable.
2018-04-21 23:07:52 +02:00
2acc0e5f8f
gnu: r-gsubfn: Update to 0.7.
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* gnu/packages/cran.scm (r-gsubfn): Update to 0.7.
2018-04-21 23:07:52 +02:00
7bd6ecd7fa
gnu: r-psych: Update to 1.8.3.3.
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* gnu/packages/cran.scm (r-psych): Update to 1.8.3.3.
2018-04-21 23:07:52 +02:00
d087f47d61
gnu: r-quantmod: Update to 0.4-13.
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* gnu/packages/cran.scm (r-quantmod): Update to 0.4-13.
2018-04-21 23:07:52 +02:00
cb9f404187
gnu: r-tinytex: Update to 0.5.
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* gnu/packages/cran.scm (r-tinytex): Update to 0.5.
2018-04-21 23:07:52 +02:00
1d310349bb
gnu: r-xts: Update to 0.10-2.
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* gnu/packages/cran.scm (r-xts): Update to 0.10-2.
2018-04-21 23:07:52 +02:00
2ab8cbcd1f
gnu: r-stringdist: Update to 0.9.4.7.
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* gnu/packages/cran.scm (r-stringdist): Update to 0.9.4.7.
2018-04-21 23:07:52 +02:00
9ee81a36aa
gnu: r-prodlim: Update to 2018.04.18.
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* gnu/packages/cran.scm (r-prodlim): Update to 2018.04.18.
2018-04-21 23:07:52 +02:00
3e00e3a885
gnu: r-lava: Update to 1.6.1.
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* gnu/packages/cran.scm (r-lava): Update to 1.6.1.
2018-04-21 23:07:52 +02:00
9ebfdcd36c
gnu: r-rmpi: Update to 0.6-7.
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* gnu/packages/cran.scm (r-rmpi): Update to 0.6-7.
[native-inputs]: Add pkg-config.
2018-04-21 23:07:52 +02:00
cf0da489ff
gnu: r-globaloptions: Update to 0.0.13.
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* gnu/packages/cran.scm (r-globaloptions): Update to 0.0.13.
2018-04-21 23:07:52 +02:00
9f17c0560f
gnu: r-bindrcpp: Update to 0.2.2.
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* gnu/packages/cran.scm (r-bindrcpp): Update to 0.2.2.
2018-04-21 23:07:52 +02:00
eb575e95fb
gnu: r-bindr: Update to 0.1.1.
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* gnu/packages/cran.scm (r-bindr): Update to 0.1.1.
2018-04-21 23:07:52 +02:00
dfd7299957
gnu: r-rcpp: Update to 0.12.16.
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* gnu/packages/cran.scm (r-rcpp): Update to 0.12.16.
2018-04-21 23:07:52 +02:00
0e94780446
gnu: r-plogr: Update to 0.2.0.
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* gnu/packages/cran.scm (r-plogr): Update to 0.2.0.
2018-04-21 23:07:52 +02:00
1d612cefc8
gnu: r-readxl: Update to 1.1.0.
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* gnu/packages/cran.scm (r-readxl): Update to 1.1.0.
2018-04-21 23:07:52 +02:00
41e8bd77f3
gnu: r-selectr: Update to 0.4-1.
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* gnu/packages/cran.scm (r-selectr): Update to 0.4-1.
[propagated-inputs]: Add r-r6.
2018-04-21 23:07:52 +02:00
aeca5f0c5b
gnu: r-scran: Update to 1.6.9.
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* gnu/packages/bioinformatics.scm (r-scran): Update to 1.6.9.
2018-04-21 23:07:52 +02:00
80323c3c13
gnu: r-hitc: Update to 1.22.1.
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* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.22.1.
2018-04-21 23:07:52 +02:00
b6d7deca55
gnu: r-ldblock: Update to 1.8.1.
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* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.8.1.
2018-04-21 23:07:52 +02:00
fb1dcfac46
gnu: r-erma: Update to 0.10.1.
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* gnu/packages/bioinformatics.scm (r-erma): Update to 0.10.1.
2018-04-21 23:07:52 +02:00
8defca1d94
gnu: r-gprofiler: Update to 0.6.6.
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* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.6.
2018-04-21 23:07:52 +02:00
Ludovic Courtès