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Author SHA1 Message Date
Marius Bakke 33ef61ec72
gnu: fontforge: Remove superfluous input. 
Pango propagates Glib nowadays, no need to list it eplicitly.

* gnu/packages/fontutils.scm (fontforge)[inputs]: Remove GLIB.
 2019-07-13 19:10:09 +02:00
Marius Bakke 8cae550021
gnu: gexiv2: Enable tests on all platforms. 
* gnu/packages/gnome.scm (gexiv2)[arguments]: Remove.
 2019-07-13 18:53:23 +02:00
Marius Bakke e9194eb048
gnu: python-cython: Speed up test suite. 
* gnu/packages/python-xyz.scm (python-cython)[arguments]: In the CHECK phase,
disable compiler optimizations and enable (some) parallel tests.
 2019-07-13 18:51:16 +02:00
Marius Bakke da46086507
gnu: python2-cython: Fix failing test. 
This started failing because Python no longer bundles libexpat since
commit d1659c0fb2.

* gnu/packages/python-xyz.scm (python2-cython)[arguments]: New field.
 2019-07-13 18:50:59 +02:00
Marius Bakke 4c482696a6
gnu: node: Update to 10.16.0. 
* gnu/packages/node.scm (node): Update to 10.16.0.
[arguments]: Enable previously failing tests.  Disable
'sequential/test-performance.js' and 'parallel/test-dns.js'.
 2019-07-13 01:43:47 +02:00
Marius Bakke 7555d53924
gnu: gnome-online-accounts: Fix cyclic reference in outputs. 
This exploits a new feature of 'gobject-introspection-absolute-shlibs.patch'.

* gnu/packages/gnome.scm (gnome-online-accounts)[arguments]: Set the "outputs"
variable before building.
 2019-07-12 20:07:12 +02:00
Marius Bakke 70f2b0f97d
gnu: libgnomekbd: Update to 3.26.1. 
* gnu/packages/gnome.scm (libgnomekbd): Update to 3.26.1.
 2019-07-12 19:50:28 +02:00
Marius Bakke 838a52a5fd
gnu: vte: Update to 0.56.3. 
* gnu/packages/gnome.scm (vte): Update to 0.56.3.
 2019-07-12 19:45:47 +02:00
Marius Bakke 2f15e0a1eb
gnu: samba: Provide 'rpcgen'. 
Glibc no longer includes Sun/ONC RPC support since commit
3670ea70e2.

* gnu/packages/samba.scm (samba)[native-inputs]: Add RPCSVC-PROTO.
 2019-07-12 19:44:30 +02:00
Marius Bakke 56174ade33
gnu: Add rpcsvc-proto. 
* gnu/packages/onc-rpc.scm (rpcsvc-proto): New public variable.
 2019-07-12 19:44:30 +02:00
Marius Bakke 07ace64143
gnu: gnome-calculator: Update to 3.32.2. 
* gnu/packages/gnome.scm (gnome-calculator): Update to 3.32.2.
[inputs]: Change GTKSOURCEVIEW-3 to GTKSOURCEVIEW.
 2019-07-12 17:37:54 +02:00
Marius Bakke 44d9e575df
gnu: gtksourceview: Update to 4.2.0. 
* gnu/packages/gtk.scm (gtksourceview): Update to 4.2.0.
 2019-07-12 17:37:32 +02:00
Marius Bakke 03ecf85a76
gnu: gcr: Fix build with recent Glib. 
* gnu/packages/gnome.scm (gcr)[source](patches): New field.
 2019-07-12 16:51:57 +02:00
Marius Bakke 4b8f131345
gnu: glib-networking: Remove unused input. 
This is a follow-up to commit 0d75c64d78.

* gnu/packages/gnome.scm (glib-networking)[inputs]: Remove P11-KIT.
 2019-07-12 16:51:22 +02:00
Marius Bakke ee46474d54
gnu: glib: Fix argument handling in keyfile backend. 
* gnu/packages/patches/glib-keyfile-arguments.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/glib.scm (glib)[source](patches): Add it.
 2019-07-12 16:50:14 +02:00
Marius Bakke 60ccc1653a
gnu: Remove expat/fixed. 
The merge preceding this commit (fb9a23a3f3) ignored the replacement added in
5a836ce38c (gnu: expat: fix CVE-2018-20843), because the fix is already
present in Expat 2.2.7.  This commit removes the remaining bits.

* gnu/packages/patches/expat-CVE-2018-20843.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/xml.scm (expat/fixed): Remove variable.
 2019-07-12 01:05:13 +02:00
Marius Bakke fb9a23a3f3
Merge branch 'master' into core-updates 
Conflicts:
	gnu/local.mk
	gnu/packages/python-xyz.scm
	gnu/packages/xml.scm
	guix/gexp.scm
	po/guix/POTFILES.in
 2019-07-12 01:03:53 +02:00
Jack Hill 5a836ce38c
gnu: expat: fix CVE-2018-20843 
* gnu/packages/xml.scm (expat)[replacement]: New field.
(expat/fixed): New variable.
* gnu/packages/patches/expat-CVE-2018-20843.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch file.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-07-12 00:39:01 +02:00
Jack Hill f85c8dd8ae
gnu: expat: Add additional source URI 
The expat sourceforge page announces that the project is in the process of
moving to GitHub.

* gnu/packages/xml.scm (expat)[source]: Add GitHub URI.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-07-12 00:39:01 +02:00
Ricardo Wurmus c5ac35d750
gnu: mumi: Update to 0.0.0-4.ea0a28f. 
* gnu/packages/mail.scm (mumi): Update to 0.0.0-4.ea0a28f.
 2019-07-11 23:48:08 +02:00
Pierre Langlois c894b80324
gnu: sbcl-clx: Update to 0.7.5. 
* gnu/packages/lisp.scm (sbcl-clx): Update to 0.7.5.
[origin]: Drop "clx-remove-demo.patch" and the snippet that removes demo code.
* gnu/packages/patches/clx-remove-demo.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-11 23:15:00 +02:00
Ludovic Courtès 3fb666bd40
gnu: pies: Update to 1.4. 
* gnu/packages/admin.scm (pies): Update to 1.4.
[arguments]: Modify /bin/sh reference in src/comp.c as well.
 2019-07-11 23:13:27 +02:00
Marius Bakke 878a6baa4c
Merge branch 'staging' 2019-07-11 20:33:44 +02:00
Marius Bakke 1c4b72cb34
gnu: harfbuzz: Create hb-gobject-enums.h. 
* gnu/packages/gtk.scm (harfbuzz)[native-inputs]: Add GLIB:BIN.
 2019-07-11 19:17:57 +02:00
Mark H Weaver 1c65b0e9d5
gnu: linux-libre: Update to 5.1.17. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.17.
(%linux-libre-hash): Update hash.
 2019-07-11 12:16:40 -04:00
Mark H Weaver cba1dc68da
gnu: linux-libre@4.19: Update to 4.19.58. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.58.
(%linux-libre-4.19-hash): Update hash.
 2019-07-11 12:15:47 -04:00
Mark H Weaver 783ebb961e
gnu: linux-libre@4.14: Update to 4.14.133. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.133.
(%linux-libre-4.14-hash): Update hash.
 2019-07-11 12:14:56 -04:00
Mark H Weaver d6fa410c1d
gnu: linux-libre@4.9: Update to 4.9.185. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.185.
 2019-07-11 12:14:16 -04:00
Mark H Weaver 17f874c594
gnu: linux-libre@4.4: Update to 4.4.185. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.185.
 2019-07-11 12:13:30 -04:00
Marius Bakke dc23bb4513
gnu: python-pyicu: Update to 2.3.1. 
* gnu/packages/python-xyz.scm (python-pyicu): Update to 2.3.1.
 2019-07-11 15:42:42 +02:00
Marius Bakke 568d060327
gnu: libselinux: Install python bindings to separate output. 
This reduces the closure size of glib from 203.1 to 111.3 MiB.

* gnu/packages/selinux.scm (libselinux)[outputs]: New field.
[arguments]: Set PYSITEDIR to the new "python" output.
 2019-07-11 15:40:20 +02:00
Efraim Flashner deae64ce01
gnu: vim-airline-themes: Update to 0.0.0-2.e6f2332. 
* gnu/packages/vim.scm (vim-airline-themes): Update to 0.0.0-2.e6f2332.
[version]: Use 'git-version'.
[source]: Use 'git-file-name'.
 2019-07-11 14:57:38 +03:00
Efraim Flashner 34e549d813
gnu: msmtp: Install additional files. 
* gnu/packages/mail.scm (msmtp)[arguments]: Rename custom phase
install-msmtpq to install-additional-files. Install vim plugins.
 2019-07-11 09:56:08 +03:00
Tobias Geerinckx-Rice 78ca483a07
gnu: perl-xml-compile: Update to 1.63. 
* gnu/packages/xml.scm (perl-xml-compile): Update to 1.63.
 2019-07-11 00:27:27 +02:00
Tobias Geerinckx-Rice cf1b1ab007
gnu: perl-html-form: Update to 6.04. 
* gnu/packages/web.scm (perl-html-form): Update to 6.04.
 2019-07-11 00:27:27 +02:00
Tobias Geerinckx-Rice 4cf57c3c8d
gnu: xscreensaver: Remove CFLAG for old gcc versions. 
* gnu/packages/xdisorg.scm (xscreensaver)[arguments]: Do what the
comment tells us.
 2019-07-11 00:27:27 +02:00
Tobias Geerinckx-Rice 4995a40478
gnu: xscreensaver: Update to 5.43. 
* gnu/packages/xdisorg.scm (xscreensaver): Update to 5.43.
 2019-07-11 00:27:27 +02:00
Tobias Geerinckx-Rice 347b4c47b4
gnu: acpica: Update to 20190703. 
* gnu/packages/admin.scm (acpica): Update to 20190703.
 2019-07-10 23:23:45 +02:00
Tobias Geerinckx-Rice 975a0c15ea
gnu: sedsed: Edit description. 
* gnu/packages/admin.scm (sedsed)[description]: Use @command{} instead
of command(n) and do some minor editing.
 2019-07-10 23:23:45 +02:00
Tobias Geerinckx-Rice fbdabdad2d
gnu: sedsed: Use HTTPS home page. 
* gnu/packages/admin.scm (sedsed)[home-page]: Use HTTPS.
 2019-07-10 23:23:45 +02:00
Efraim Flashner bba3c48970
gnu: cvs: Rename patch file. 
* gnu/packages/version-control.scm (cvs)[source]: Rename patch.
* gnu/packages/patches/cvs-2017-12836.patch: Rename to ...
* gnu/packages/patches/cvs-CVE-2018-12836.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Register it.
 2019-07-10 21:33:48 +03:00
Efraim Flashner 5a4e5c26cc
gnu: libexif: Fix CVE-2018-20030. 
* gnu/packages/photo.scm (libexif)[source]: Add patch.
* gnu/packages/patches/libexif-CVE-2018-20030.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2019-07-10 21:33:48 +03:00
Efraim Flashner 037036cb19
gnu: strongswan: Update to 5.8.0 [fixes CVE-2018-17540, CVE-2018-2065{0,1}]. 
* gnu/packages/networking.scm (strongswan): Update to 5.8.0.
 2019-07-10 21:33:48 +03:00
Efraim Flashner 666879604c
gnu: net-snmp: Mark package not affected by CVE-2015-8100. 
* gnu/packages/networking.scm (net-snmp)[properties]: New field.
 2019-07-10 21:33:34 +03:00
Marius Bakke ff1e80d791
gnu: python-cram: Fix build. 
* gnu/packages/python-xyz.scm (python-cram)[arguments]: Do not require 100%
test coverage.  While here, do not move the 'check' phase, as
PYTHON-BUILD-SYSTEM now runs tests after install by default.
 2019-07-10 20:25:40 +02:00
Marius Bakke fa0d5854ef
gnu: ToME4: Fix FTBFS with GCC 7. 
* gnu/packages/games.scm (tome4)[arguments]: Preserve CPATH in 'set-sdl-paths'
phase..
 2019-07-10 20:23:46 +02:00
Tobias Geerinckx-Rice e14c06d87a
gnu: testdisk: Download over HTTPS. 
* gnu/packages/admin.scm (testdisk)[source]: Use HTTPS.
 2019-07-10 17:39:28 +02:00
Tobias Geerinckx-Rice 2b336e9354
gnu: testdisk: Update to 7.1. 
* gnu/packages/admin.scm (testdisk): Update to 7.1.
 2019-07-10 17:39:28 +02:00
Tobias Geerinckx-Rice bde9912506
gnu: sedsed: Update to 1.1. 
* gnu/packages/admin.scm (sedsed): Update to 1.1.
[arguments]: Use (default) Python (3).
 2019-07-10 17:39:28 +02:00
Tobias Geerinckx-Rice b7e26ec695
gnu: sedsed: Symlink after wrapping. 
Drop unused .sedsed-real symlink and avoid sedsed → sedsed.py
→ .sedsed.py-real exec chain.

* gnu/packages/admin.scm (sedsed)[arguments]: Move ‘symlink’ phase
after ‘wrap’.
 2019-07-10 17:39:28 +02:00
Tobias Geerinckx-Rice ec40227b2c
gnu: mutter: Remove duplicate gtk+ input. 
* gnu/packages/gnome.scm (mutter)[arguments]: Remove duplicate gtk+
from propagated-inputs.
 2019-07-10 17:39:28 +02:00
Efraim Flashner 841bddb4b4
gnu: a2ps: Fix CVE-2015-8107. 
* gnu/packages/pretty-print.scm (a2ps)[source]: Add patch.
* gnu/packages/patches/a2ps-CVE-2015-8107.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2019-07-10 12:47:47 +03:00
Efraim Flashner 3e4afe0298
gnu: mupdf: Update to 1.15.0 [fixes CVE-2018-18662, CVE-2018-19777, 
CVE-2018-1988{1,2}, CVE-2019-613{0,1}, CVE-2019-7321].

* gnu/packages/pdf.scm (mupdf): Update to 1.15.0.
[source]: Update source snippet.
 2019-07-10 12:46:02 +03:00
Efraim Flashner cb5b51498b
gnu: mujs: Update to 1.0.6 [fixes CVE-2019-1141{1,2,3}, CVE-2019-12798]. 
* gnu/packages/javascript.scm (mujs): Update to 1.0.6.
[source]: Download using url-fetch.
[arguments]: Update 'install-shared-library phase.
[home-page]: Update to new home-page.
 2019-07-10 12:45:35 +03:00
Efraim Flashner 05f386f103
gnu: plib: Fix CVE-2011-4620, CVE-2012-4552. 
* gnu/packages/game-development.scm (plib)[patches]: Add patches.
* gnu/packages/patches/plib-CVE-2011-4620.patch,
gnu/packages/patches/plib-CVE-2012-4552.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
 2019-07-10 12:45:34 +03:00
Efraim Flashner ba70479753
gnu: python-gnupg: Update to 0.4.4 [fixes CVE-2019-6690]. 
* gnu/packages/gnupg.scm (python-gnupg): Update to 0.4.4.
 2019-07-10 12:45:24 +03:00
Efraim Flashner 11450f15b4
gnu: gpgme: Add updater properties. 
* gnu/packages/gnupg.scm (gpgme)[properties]: New field. Add ftp-server,
ftp-directory.
 2019-07-10 11:40:55 +03:00
Efraim Flashner ec3f88af7e
gnu: npth: Add updater properties. 
* gnu/packages/gnupg.scm (npth)[properties]: New field. Add ftp-server,
ftp-directory.
 2019-07-10 11:39:09 +03:00
Efraim Flashner ee755b702f
gnu: gpa: Update to 0.10.0. 
* gnu/packages/gnupg.scm (gpa): Update to 0.10.0.
 2019-07-10 11:06:32 +03:00
Efraim Flashner 9a451a6740
gnu: gpa: Add updater properties. 
* gnu/packages/gnupg.scm (gpa)[properties]: New field, add ftp-server,
ftp-directory.
 2019-07-10 11:06:31 +03:00
Efraim Flashner 2d775ed2d6
gnu: postgresql@9: Update to 9.6.14 [fixes CVE-2018-1058, CVE-2019-9193] 
* gnu/packages/databases.scm (postgresql@9): Update to 9.6.14.
 2019-07-10 11:06:15 +03:00
Efraim Flashner e5b810f755
gnu: gnupg: Update to 2.2.17. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.17.
 2019-07-10 09:56:08 +03:00
Mark H Weaver 6c83c48391
gnu: icecat: Update to 60.8.0-guix1 [security fixes]. 
Includes fixes for CVE-2019-9811, CVE-2019-11709, CVE-2019-11711,
CVE-2019-11712, CVE-2019-11713, CVE-2019-11715, CVE-2019-11717,
CVE-2019-11719, CVE-2019-11729, and CVE-2019-11730.

* gnu/packages/gnuzilla.scm (%icecat-version): Update to 60.8.0-guix1.
(icecat-source)[upstream-firefox-source]: Update hash.
(icecat): Refresh some stale comments.
 2019-07-09 19:31:36 -04:00
Marius Bakke 7a05fdd0e1
Merge branch 'master' into staging 2019-07-10 00:55:42 +02:00
Marius Bakke 760d90cc6a
gnu: ungoogled-chromium: Increase build timeout. 
* gnu/packages/chromium.scm (ungoogled-chromium)[properties]: Set TIMEOUT to
40 hours.
 2019-07-10 00:54:29 +02:00
Marius Bakke c1f4073ff5
gnu: rapidjson: Fix FTBFS with GCC 7. 
* gnu/packages/patches/rapidjson-gcc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/web.scm (rapidjson)[source](patches): New field.
 2019-07-10 00:29:32 +02:00
Marius Bakke 78affefecc
gnu: oath-toolkit: Fix FTBFS with GCC 7. 
* gnu/packages/authentication.scm (oath-toolkit)[source](patches): Add
upstream patch.
 2019-07-09 23:35:30 +02:00
Tobias Geerinckx-Rice 12b1ec6617
gnu: iproute2: Update to 5.2.0. 
* gnu/packages/linux.scm (iproute): Update to 5.2.0.
 2019-07-09 23:08:50 +02:00
Marius Bakke 4e073dcd41
gnu: glib: Remove superfluous input. 
* gnu/packages/glib.scm (glib)[inputs]: Remove BASH.
 2019-07-09 22:17:39 +02:00
Marius Bakke 9e13a3e059
gnu: glib: Update to 2.60.5. 
* gnu/packages/glib.scm (glib): Update to 2.60.5.
 2019-07-09 22:16:30 +02:00
Marius Bakke e81b14f08d
gnu: freetype: Update to 2.10.1. 
* gnu/packages/fontutils.scm (freetype): Update to 2.10.1.
[source](uri): Adjust for new tarball name.
 2019-07-09 21:26:21 +02:00
Marius Bakke 7fe6dcf708
gnu: Remove indent@2.2.10. 
* gnu/packages/code.scm (indent): Update to 2.2.12.
[native-inputs]: Add TEXINFO.
(indent-2.2.12): Remove variable.
 2019-07-09 21:09:47 +02:00
Marius Bakke 33f460addf
gnu: flex: Remove superfluous input. 
The configure script will warn that "make indent" is unavailable, but
apart from that this input is not actually used for the build process.

* gnu/packages/flex.scm (flex)[inputs]: Remove INDENT.
* gnu/packages/commencement.scm (flex-boot0)[inputs]: Likewise.
 2019-07-09 21:07:13 +02:00
Marius Bakke 680bc34da4
gnu: Python: Update to 3.7.4. 
* gnu/packages/python.scm (python-3.7): Update to 3.7.4.
[source](snippet): Move disabled tests ...
[arguments]<#:make-flags>: ... here.  Enable previously failing tests.
<#:phases>: Add 'set-TZDIR'.
[native-inputs]: Add TZDATA-FOR-TESTS.
* gnu/packages/commencement.scm (python-boot0)[arguments]: Clear <#:make-flags>.
Delete 'set-TZDIR' phase.
* gnu/packages/patches/python-3-fix-tests.patch: Disable two new tests that do
not work in the build container.  Adjust context.
 2019-07-09 20:59:58 +02:00
Oleg Pykhalov 38a9b4b74e
gnu: python-internetarchive: Update to 1.8.5. 
* gnu/packages/web.scm (python-internetarchive)[version]: Update to 1.8.5.
[source](modules, snippet): New fields.
 2019-07-09 20:41:14 +03:00
Kei Kebreau d4137d84ac
gnu: make-glibc-locales: Adjust patch for glibc 2.29. 
The patch for glibc 2.28 and earlier replaces the same content, but the context
in the patch is different enough to fail to merge.

* gnu/packages/base.scm (make-glibc-locales)[source]: Add patch.
* gnu/packages/patches/glibc-locales.patch: Adjust for glibc 2.29 and move old
file...
* gnu/packages/patches/glibc-locales-2.28.patch: ...here.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-07-09 12:15:52 -04:00
Efraim Flashner 710f027765
gnu: wgetpaste: Update to 2.29. 
* gnu/packages/wget.scm (wgetpaste): Update to 2.29.
[arguments]: Replace default paste service. Install license file.
 2019-07-09 16:52:59 +03:00
Oleg Pykhalov 534ceb7de1
gnu: emacs-stumpwm-mode: Update to 0.0.1-1.8fbe071. 
* gnu/packages/emacs-xyz.scm (emacs-stumpwm-mode): Update to 0.0.1-1.8fbe071.
 2019-07-09 14:42:22 +03:00
Tobias Geerinckx-Rice 48182cff03
gnu: r-biocinstaller: Remove entirely. 
This follows up on commit 0971f8bd88,
which led to ‘r-biocmanager: unbound variable’ errors.  See
<https://lists.gnu.org/archive/html/guix-devel/2019-07/msg00120.html>.

* gnu/packages/bioinformatics.scm (r-biocinstaller): Remove variable.
 2019-07-09 13:26:26 +02:00
Hartmut Goebel 582de58c69
gnu: Add anonip. 
* gnu/packages/web.scm (anonip): New variable.
 2019-07-09 13:20:36 +02:00
Nicolas Goaziou 3c2bbbb0ff
gnu: snap: Update to 5.0.1. 
* gnu/packages/education.scm (snap): Update to 5.0.1.
 2019-07-09 09:13:43 +02:00
Nicolas Goaziou 032ca4baa7
gnu: musescore: Update to 3.2.3. 
* gnu/packages/music.scm (musescore): Update to 3.2.3.
 2019-07-09 09:02:50 +02:00
Tobias Geerinckx-Rice 3fd3dd33cb
gnu: libmicrohttpd: Update to 0.9.65. 
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.65.
 2019-07-09 04:48:02 +02:00
Carl Dong ca3757e1c2
gnu: glibc: Add 2.27 supported locales patch. 
The 'glibc-supported-locales.patch' was updated for glibc 2.29, breaking
compatibility with 2.27. Add a 2.27-specific supported locales patch.

* gnu/packages/patches/glibc-2.27-supported-locales.patch: New file.
* gnu/packages/base.scm (glibc-2.27)[source](patches): Use
'glibc-2.27-supported-locales.patch' instead.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2019-07-08 21:20:17 -04:00
Tobias Geerinckx-Rice 35014c402d
gnu: grub: Build ‘grub-mount’. 
This increases the closure size by a mere 1.8 MiB (0.8%).

* gnu/packages/bootloaders.scm (grub)[inputs]: Add fuse.
 2019-07-09 01:43:31 +02:00
Tobias Geerinckx-Rice 069ab3bbfd
gnu: grub: Update to 2.04. 
* gnu/packages/bootloaders.scm (grub): Update to 2.04.
[source]: Remove upstreamed patches.
[arguments]: Don't require Python.  Add a ‘disable-pixel-perfect-test’
phase to skip tests that fail with with our newer Unifont.
* gnu/packages/patches/grub-efi-fat-serial-number.patch: Adjust context.
* gnu/packages/patches/grub-binutils-compat.patch,
gnu/packages/patches/grub-check-error-efibootmgr.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2019-07-09 01:28:11 +02:00
Carl Dong bcfc54fff8
gnu: Update to 0.18.0. 
* gnu/packages/finance.scm (bitcoin-core): Update to 0.18.0.
[inputs]: Use bdb-4.8 for compatibility.
[arguments]: Remove --with-incompatible-bdb from configure flags and add
check-functional phase for functional tests.
 2019-07-08 16:22:01 -04:00
Carl Dong 883fe9bb91
gnu: bdb: Add 4.8.30. 
* gnu/packages/dbm.scm (bdb-4.8): New variable.
[arguments]: Configure and build from 'build_unix' directory as
mentioned in documentation.
(bdb-5.3): Inherit from bdb-4.8.
(bdb-6): Inherit from bdb-4.8.
(bdb): Point to bdb-6.
 2019-07-08 16:21:48 -04:00
Tobias Geerinckx-Rice 0971f8bd88
gnu: Remove r-biocinstaller. 
It requires R < 3.6 and is no longer supported.

* gnu/packages/bioinformatics.scm (r-biocinstaller): Define as
deprecated in favour of r-biocmanager.
 2019-07-08 16:13:11 +02:00
Tobias Geerinckx-Rice 1042e3481d
gnu: r-xbioc: Update to 0.1.16-1.6ff0670. 
This is needed to deprecate r-biocinstaller, which is no longer
distributed.

* gnu/packages/bioinformatics.scm (r-xbioc): Update to 0.1.16-1.6ff0670.
[propagated-inputs]: Replace deprecated r-biocinstaller with
r-biocmanager.
 2019-07-08 16:11:55 +02:00
Tobias Geerinckx-Rice ddfb62807d
gnu: cmh: Fix build. 
This follows up on commit 1de48e8f8a.

* gnu/packages/algebra.scm (fplll-4-cmh): New variable.
(cmh)[inputs]: Use it.
 2019-07-08 15:48:07 +02:00
Tobias Geerinckx-Rice 69e3512b7c
gnu: libomp: Download over HTTPS. 
* gnu/packages/llvm.scm (libomp)[source]: Use HTTPS.
 2019-07-08 15:33:35 +02:00
Tobias Geerinckx-Rice e2170c3192
gnu: libomp: Fix source hash. 
This is a follow-up to commit c5296e205b,
which updated llvm.

* gnu/packages/llvm.scm (libomp)[source]: Fix hash.
 2019-07-08 15:33:35 +02:00
Tobias Geerinckx-Rice 61242625ad
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.4.7. 
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
Update to 3.4.7.
 2019-07-08 15:33:35 +02:00
Joseph LaFreniere 377b0501c4
gnu: Add emacs-polymode-org. 
* gnu/packages/emacs-xyz.scm (emacs-polymode-org): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-08 13:05:56 +02:00
Joseph LaFreniere 85630d8042
gnu: emacs-polymode: Update to 0.2. 
* gnu/packages/emacs-xyz.scm (emacs-polymode): Update to 0.2.
[source]: Change URL of Git repository to Polymode GitHub project.
[homepage]: Change URL to polymode GitHub project.
[description]: Realign text.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-08 13:05:56 +02:00
ison 88a29b5cd3
gnu: i3blocks: Update to ec050e7. 
* gnu/packages/wm.scm (i3blocks): Update to ec050e7.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-08 13:05:56 +02:00
Pierre Langlois a55dd25d3e
gnu: dosfstools: Enable compat symlinks. 
Enable compatibility symlinks to provide commands such as `mkfs.vfat`.

* gnu/packages/disk.scm (dosfstools)[arguments]: Pass
"--enable-compat-symlinks" to configure.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-08 13:05:56 +02:00
Pierre Langlois b9a1d74de5
gnu: wireservice: New wireservice-package macro. 
Replace the parent 'base-package' variable with a 'wireservice-package' macro
that includes all common package fields.

* gnu/packages/wireservice.scm (base-package): Delete.
(wireservice-package): New macro.
(python-leather, python-agate, python-agate-sql, python-agate-dbf,
python-agate-excel): Use wireservice-package.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-08 13:05:55 +02:00
Christopher Baines 8747477deb
gnu: gobject-introspection: Update absolute-shlib-path.patch. 
Incorporate some changes from nixpkgs to the gobject-introspection package
patches.  This is motivated by looking at issues with libsoup and lollypop.
These changes mean that the share/gir-1.0/Soup-2.4.gir file within
libsoup (and the corresponding binary typelib) references libsoup-2.4.so.1
with an absolute filename, whereas previously, the filename wasn't absolute.

With an absolute filename in the typelib, loading libsoup from lollypop should
work.

* gnu/packages/patches/gobject-introspection-absolute-shlib-path.patch:
Incorporate changes from nixpkgs.
 2019-07-08 08:42:29 +01:00