5c9d15055f
gnu: Add r-affyio.
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* gnu/packages/bioinformatics.scm (r-affyio): New variable.
2017-01-17 21:46:49 +01:00
71676a1f4c
gnu: Add r-mzr.
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* gnu/packages/bioinformatics.scm (r-mzr): New variable.
2017-01-17 21:46:49 +01:00
ae26217430
gnu: Add r-protgenerics.
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* gnu/packages/bioinformatics.scm (r-protgenerics): New variable.
2017-01-17 21:46:49 +01:00
0e7d058e44
gnu: Add r-maldiquant.
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* gnu/packages/bioinformatics.scm (r-maldiquant): New variable.
2017-01-17 21:46:49 +01:00
1f40e73cb5
gnu: Add r-raremetals2.
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* gnu/packages/bioinformatics.scm (r-raremetals2): New variable.
2017-01-17 21:46:48 +01:00
fb1e528ef1
gnu: Add r-seqminer.
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* gnu/packages/bioinformatics.scm (r-seqminer): New variable.
2017-01-17 21:46:48 +01:00
26a281ef27
gnu: Add r-compquadform.
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* gnu/packages/statistics.scm (r-compquadform): New variable.
2017-01-17 21:46:48 +01:00
769fc6bb18
gnu: Add ribodiff.
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* gnu/packages/bioinformatics.scm (ribodiff): New variable.
2017-01-17 21:46:48 +01:00
e84efc50d7
gnu: Add hisat2.
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* gnu/packages/bioinformatics.scm (hisat2): New variable.
2017-01-17 21:46:48 +01:00
5f764dd7ff
gnu: Add r-fivethirtyeight.
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* gnu/packages/statistics.scm (r-fivethirtyeight): New variable.
2017-01-17 21:46:47 +01:00
40effef7ca
gnu: powertabeditor: Update to 2.0.0-alpha9.
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* gnu/packages/music.scm (powertabeditor): Update to 2.0.0-alpha9.
[source]: Simplify snippet.
[arguments]: Adjust phases; remove unnecessary configure flag.
2017-01-17 21:46:25 +01:00
46076d08ed
Revert "gnu: cups-filters: Disable mutool integration."
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This change would cause 594 packages to be rebuilt, so it was moved to
the staging branch.
This reverts commit 58a7bbc5fe
2017-01-17 15:13:54 -05:00
cf3768fa06
gnu: webkitgtk: Update to 2.14.3 [security fixes].
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Fixes CVE-2016-{7586,7589,7592,7599,7623,7632,7635,7639,7641,7645,7652,7654,7656}.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.14.3.
2017-01-17 14:56:13 -05:00
58a7bbc5fe
gnu: cups-filters: Disable mutool integration.
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* gnu/packages/cups.scm (cups-filters)[arguments]: Add ‘--disable-mutool’
to #:configure-flags.
[inputs]: Remove mupdf.
2017-01-17 18:42:37 +01:00
16869cecf6
gnu: libpsl: Update to 0.17.0.
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* gnu/packages/web.scm (libpsl): Update to 0.17.0.
2017-01-17 18:42:36 +01:00
cdb93e50ea
gnu: proxychains-ng: Update to 4.12.
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* gnu/packages/networking.scm (proxychains-ng): Update to 4.12.
2017-01-17 18:42:34 +01:00
718c12786b
gnu: password-store: Install bash completions.
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* gnu/packages/password-utils.scm (password-store)[arguments]: Add
'install-shell-completions' phase.
2017-01-17 16:18:35 +01:00
c554c6bab8
gnu: gnucash: Update to 2.6.15.
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* gnu/packages/gnucash.scm (gnucash): Update to 2.6.15.
2017-01-17 15:07:08 +01:00
065d012511
gnu: Add proj.4.
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* gnu/packages/geo.scm (proj.4): New variable.
(gnome-maps): Use license: prefix.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-01-17 14:41:08 +01:00
f68647299c
gnu: xscreensaver: Update to 5.36.
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* gnu/packages/xdisorg.scm (xscreensaver): Update to 5.36.
2017-01-17 14:21:10 +01:00
ae6591efa5
gnu: perl-image-exiftool: Update to 10.40.
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* gnu/packages/photo.scm (perl-image-exiftool): Update to 10.40.
[synopsis, description]: Mention more capabilities.
2017-01-17 03:50:36 -05:00
265afbdfe7
gnu: ghc-quickcheck-instances: Update to 0.3.12.
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* gnu/packages/haskell.scm (ghc-quickcheck-instances): Update to 0.3.12.
[inputs]: Add ghc-scientific and ghc-vector.
2017-01-17 03:58:19 +01:00
19083a5eee
gnu: imagemagick: Update to 6.9.7-4 [security fixes].
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* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.7-4.
2017-01-16 18:39:41 -05:00
9381a02a53
gnu: Add scrypt.
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* gnu/packages/crypto.scm (scrypt): New variable.
2017-01-16 18:02:14 -05:00
ce9701fb95
gnu: Add emacs-stripe-buffer.
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* gnu/packages/emacs.scm (emacs-stripe-buffer): New variable.
2017-01-16 23:37:43 +01:00
0b35f11d76
gnu: Add emacs-git-timemachine.
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* gnu/packages/emacs.scm (emacs-git-timemachine): New variable.
2017-01-16 23:37:43 +01:00
ae21519f63
gnu: guile-sqlite3: Provide a new source URL.
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* gnu/packages/guile.scm (guile-sqlite3)[home-page]: Change.
2017-01-16 23:27:23 +01:00
384344198d
file-systems: 'file-system-needed-for-boot?' is #t for parents of the store.
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Suggested by John Darrington <john@darrington.wattle.id.au>.
* gnu/system/file-systems.scm (%not-slash): New variable.
(file-prefix?): New procedure.
(file-system-needed-for-boot?): Use it to check whether FS holds the
store.
* tests/file-systems.scm ("file-system-needed-for-boot?"): New test.
* gnu/tests/install.scm (%separate-store-os)[file-systems]: Remove
'needed-for-boot?' field for "/gnu".
2017-01-16 23:27:23 +01:00
b91cfa22e1
gnu: Add r-centipede.
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* gnu/packages/bioinformatics.scm (r-centipede): New variable.
2017-01-16 23:18:27 +01:00
1fdfbadff0
gnu: Add ocaml-lwt.
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* gnu/packages/ocaml.scm (ocaml-lwt): New variable.
2017-01-16 22:34:53 +01:00
37f17e2a1e
gnu: Add ocaml-ssl.
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* gnu/packages/ocaml.scm (ocaml-ssl): New variable.
2017-01-16 22:34:51 +01:00
1342fce102
gnu: Add ocaml-react.
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* gnu/packages/ocaml.scm (ocaml-react): New variable.
2017-01-16 22:34:48 +01:00
0a7b43a818
gnu: Add ocaml-ppx-tools.
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* gnu/packages/ocaml.scm (ocaml-ppx-tools): New variable.
2017-01-16 22:34:45 +01:00
69705efe94
gnu: Add ocaml-alcotest.
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* gnu/packages/ocaml.scm (ocaml-alcotest): New variable.
2017-01-16 22:34:42 +01:00
f46bceb670
gnu: Add ocaml-astring.
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* gnu/packages/ocaml.scm (ocaml-astring): New variable.
2017-01-16 22:34:39 +01:00
beeb2d419b
gnu: Add ocaml-fmt.
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* gnu/packages/ocaml.scm (ocaml-fmt): New variable.
2017-01-16 22:34:36 +01:00
8fe6b9327d
gnu: camlzip: Install both modules.
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* gnu/packages/ocaml.scm (camlzip) [arguments]: Install both zip and camlzip
modules.
2017-01-16 22:34:30 +01:00
138adbbe05
gnu: Add python-autopep8.
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* gnu/packages/python.scm (python-autopep8, python2-autopep8): New variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-16 22:13:21 +01:00
2f4d08ee7f
gnu: kdevelop: Set more paths in wrapper script.
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* gnu/packages/kde.scm (kdevelop)[arguments]: Add more paths in
wrap-executable: add "/share" output of kdevplatform and kcmutils to
$XDG_DATA_DIRS; add "lib/plugins" from user profile to $QT_PLUGIN_PATH.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-16 22:13:21 +01:00
fc11b0d3b2
gnu: kdevelop: Update to 5.0.3.
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* gnu/packages/kde.scm (kdevelop, kdevplatform): Update to 5.0.3.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-16 22:13:21 +01:00
0aeed5e310
grafts: Preserve the cache across recursive calls.
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Before this commit, we'd lose the cache across recursive calls to
'cumulative-grafts', which isn't great performance-wise.
This bug was already present before
d38bc9a9f6
2017-01-16 22:13:21 +01:00
90ad5c8836
grafts: Actually cache grafts during the derivation DAG traversal.
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This fixes a regression introduced in
d38bc9a9f6
2017-01-16 22:13:21 +01:00
b09903619f
gnu: linux-libre: Update to 4.9.4.
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* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.9.4.
2017-01-16 05:26:33 -05:00
8220c963e1
gnu: linux-libre@4.4: Update to 4.4.43.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.43.
2017-01-16 05:23:04 -05:00
ad1c349db0
gnu: dwm: Add '.desktop' file.
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Fixes <https://bugs.gnu.org/25438 >.
* gnu/packages/suckless.scm (dwm)[arguments]: Add
'install-xsession' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-16 11:03:46 +01:00
0d2c8f3420
gnu: dwm: Use modify-phases.
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* gnu/packages/suckless.scm (dwm): Use modify-phases.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-16 11:03:46 +01:00
849a1b8133
profiles: Export 'ca-certificate-bundle'.
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* guix/profiles.scm: Export ca-certificate-bundle, such that it can be used in
other G-expressions. This is useful where these G-expressions run programs
that require a ca-certificate-bundle, e.g. git.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-16 11:03:42 +01:00
7d8b59139a
services: Export 'service-extension' procedures.
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* gnu/services.scm: Export service-extension-target and
service-extension-compute. This allows for greater extensiblity of services
by enabling service extensions to be wrapped. For example, the parameters
passed to the compute function can be modified, or the return value of the
compute function can be modified.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-16 11:03:26 +01:00
4ec840917c
gnu: zathura-pdf-poppler: Update to 0.2.7.
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* gnu/packages/pdf.scm (zathura-pdf-poppler): Update to 0.2.7.
2017-01-16 10:21:46 +01:00
16a9f83fe0
gnu: zathura-djvu: Update to 0.2.6.
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* gnu/packages/pdf.scm (zathura-djvu): Update to 0.2.6.
2017-01-16 10:20:15 +01:00
Ricardo Wurmus