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36212 Commits

Author SHA1 Message Date
pimi b6afe7b7f5
gnu: Add r-abnormality. 
* gnu/packages/cran.scm (r-abnormality): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-09-13 22:16:01 +02:00
Tobias Geerinckx-Rice f0314f65df
gnu: Add perl-devel-checklib. 
* gnu/packages/perl.scm (perl-devel-checklib): New public variable.
 2018-09-13 19:53:08 +02:00
Tobias Geerinckx-Rice 7ec4f648e5
gnu: sg3_utils: Mark up description. 
* gnu/packages/scsi.scm (sg3_utils)[description]: Use @dfn{}.
Wrap commands in @command{} rather than @code{}, and @itemize them.
 2018-09-13 19:53:08 +02:00
Tobias Geerinckx-Rice 581b6f5e96
gnu: sudo: Update to 1.8.25p1. 
* gnu/packages/admin.scm (sudo): Update to 1.8.25p1.
 2018-09-13 19:53:07 +02:00
Tobias Geerinckx-Rice 0b0b43ed7a
gnu: youtube-viewer: Update to 3.4.1. 
* gnu/packages/video.scm (youtube-viewer): Update to 3.4.1.
 2018-09-13 19:53:07 +02:00
Tobias Geerinckx-Rice 6be445785a
gnu: youtube-viewer: Don't use unstable tarball. 
* gnu/packages/video.scm (youtube-viewer)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2018-09-13 19:53:07 +02:00
Leo Famulari 7d1cc61293
Revert "gnu: libinput: Update to 1.12.0." 
Libinput-minimal has a lot of dependent packages, and this isn't reported by
`guix refresh --list-dependent`. We'll save this commit for another time.

This reverts commit 38dc3d6f17.
 2018-09-13 13:28:10 -04:00
pimi ebb3cdb1ea
gnu: Add r-abjutils. 
* gnu/packages/cran.scm (r-abjutils): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-09-13 19:18:47 +02:00
pimi 1efcd0f1ea
gnu: Add r-abhgenotyper. 
* gnu/packages/cran.scm (r-abhgenotyper): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-09-13 19:13:43 +02:00
Manuel Graf ae72b8f55b
gnu: Add ClusterShell. 
* gnu/packages/ssh.scm (clustershell): New variable.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-09-13 19:12:25 +02:00
Leo Famulari 38dc3d6f17
gnu: libinput: Update to 1.12.0. 
* gnu/packages/freedesktop.scm (libinput): Update to 1.12.0.
 2018-09-13 13:08:24 -04:00
pimi ef26400b66
gnu: Add r-abf2. 
gnu/packages/cran.scm (r-abf2): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-09-13 19:05:35 +02:00
Efraim Flashner f21967a44b
gnu: retroarch: Fix building on armhf-linux. 
* gnu/packages/emulators.scm (retroarch)[arguments]: Add custom flags
when building for armhf-linux.
 2018-09-13 18:40:32 +03:00
Efraim Flashner fade67ab75
gnu: retroarch: Use shared zlib. 
* gnu/packages/emulators.scm (retroarch)[arguments]: In custom
'configure phase, use our zlib instead of vendor's zlib.
 2018-09-13 18:40:30 +03:00
Danny Milosavljevic 060366f6b3
gnu: rust@1.23.0: Inherit outputs. 
* gnu/packages/rust.scm (rust-1.23)[outputs]: Inherit.
 2018-09-13 17:19:04 +02:00
Danny Milosavljevic b78fe27b31
gnu: rust@1.25.0: Disable pedantic test. 
* gnu/packages/rust.scm (rust-1.25)[arguments]<#:phases>
[disable-nil-enum-test]: New phase.
 2018-09-13 17:17:15 +02:00
Danny Milosavljevic 6fe73b487b
gnu: rust: Accept more detailed gdb responses. 
* gnu/packages/patches/rust-1.25-accept-more-detailed-gdb-lines.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/rust.scm (rust-1.25): Use it.
(rust-1.26): Use it.
(rust): Use it.
 2018-09-13 17:17:15 +02:00
pimi 3cadd3ce93
gnu: Add r-abe. 
gnu/packages/cran.scm (r-abe): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-09-13 15:21:40 +02:00
pimi d1ca3d7297
gnu: Add r-svdialogs. 
gnu/packages/cran.scm (r-svdialogs): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-09-13 15:07:45 +02:00
宋文武 26700caed9
gnu: racket: Fix incompatibility with libedit. 
The former patching made racket detecting libedit as the old 2.11 version,
which leads to failure:
<https://lists.gnu.org/archive/html/help-guix/2018-09/msg00027.html>.

* gnu/packages/scheme.scm (racket)[arguments]: Patch the 'ffi-lib' call of
libedit using 'PLT_READLINE_LIB'.
 2018-09-13 20:20:41 +08:00
Ludovic Courtès ac4d2ec81a
build-self: Emit a useful message upon error. 
* build-aux/build-self.scm (build): Raise a '&message' condition instead
of calling 'error'.
 2018-09-13 10:29:59 +02:00
Ludovic Courtès 78c9058dde
build-self: Add a dummy (git) module to 'compute-guix-derivation'. 
Fixes a regression introduced in
aed0a59405.

* build-aux/build-self.scm (build-program)[fake-git]: New variable.
Use it as an imported module.
 2018-09-13 10:29:59 +02:00
Clément Lassieur 88bfabf111
hydra: Add support for manifests. 
* build-aux/hydra/gnu-system.scm (arguments->manifests, manifests->packages):
New procedures.
(hydra-jobs): Add a "manifests" subset.
* doc/guix.texi (Continuous Integration): Update accordingly.
 2018-09-13 10:15:04 +02:00
Danny Milosavljevic 73dc7834de
gnu: rust@1.20.0: Replace "default-ar" by "ar". 
* gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[configure]: Replace
"default-ar" by "ar".
 2018-09-13 10:10:49 +02:00
Danny Milosavljevic 1ab3e1dd98
gnu: Add rust@1.22.1. 
* gnu/packages/rust.scm (rust-1.22): New variable.
 2018-09-13 10:10:49 +02:00
Danny Milosavljevic 05ebff92bd
gnu: Add rust@1.21.0. 
* gnu/packages/rust.scm (rust-1.21): New variable.
 2018-09-13 10:10:49 +02:00
Danny Milosavljevic e69b1a7c6e
gnu: rust-bootstrap: Clean up comments. 
* gnu/packages/rust.scm (rust-bootstrap): Clean up comments.
 2018-09-13 10:10:49 +02:00
Danny Milosavljevic bfdc0e4d45
gnu: rust: Move "cc" from rust-bootstrap to rust proper. 
* gnu/packages/rust.scm (rust-bootstrap)[arguments]<#:phases>[install]:
Delete "cc".
(rust-1.23)[arguments]<#:phases>: Delete "provide-cc" deletion.
 2018-09-13 10:10:49 +02:00
Danny Milosavljevic 333c0ca966
gnu: rust@1.23.0: Use rust@1.20.0 as template. 
* gnu/packages/rust.scm (rust-1.23)[inherit]: Use rust-1.20.
[arguments]<#:phases>: Delete "patch-cargo-tomls" phase deletion.
Add "provide-cc" phase deletion.
Add "configure-archiver" phase deletion.
[configure]: Inherit phase.
[reset-timestamps-after-changes]: Inherit phase.
[build]: Inherit phase.
[check]: Inherit phase.
[install]: Inherit phase.
[wrap-rustc]: Inherit phase.
 2018-09-13 10:10:48 +02:00
Maxim Cournoyer f309671c28
gnu: Add emacs-org-reveal. 
* gnu/packages/emacs.scm (emacs-org-reveal): New variable.
 2018-09-12 22:48:04 -04:00
Maxim Cournoyer 82baeea297
gnu: Add emacs-elpy. 
* gnu/packages/emacs.scm (emacs-elpy): New variable.
 2018-09-12 22:16:25 -04:00
Maxim Cournoyer dcc31d7f41
gnu: Add emacs-highlight-indentation. 
* gnu/packages/emacs.scm (emacs-highlight-indentation): New variable.
 2018-09-12 22:16:25 -04:00
Maxim Cournoyer 87e9fb5753
gnu: Add emacs-pyvenv. 
* gnu/packages/emacs.scm (emacs-pyvenv): New variable.
 2018-09-12 22:16:24 -04:00
Maxim Cournoyer 2c6ff3a2bc
gnu: Add emacs-find-file-in-project. 
* gnu/packages/emacs.scm (emacs-find-file-in-project): New variable.
 2018-09-12 22:16:24 -04:00
Maxim Cournoyer 563f151bd4
gnu: Add emacs-mocker. 
* gnu/packages/emacs.scm (emacs-mocker): New variable.
 2018-09-12 22:16:24 -04:00
Maxim Cournoyer aaf10fa7d8
gnu: Add emacs-el-x. 
* gnu/packages/emacs.scm (emacs-el-x): New variable.
 2018-09-12 22:16:23 -04:00
Maxim Cournoyer 8795ce8673
gnu: Add python-black. 
* gnu/packages/python.scm (python-black): New variable.
 2018-09-12 22:16:23 -04:00
Maxim Cournoyer 7e846d07e8
gnu: Add python-toml. 
* gnu/packages/python.scm (python-toml): New variables.
 2018-09-12 22:16:23 -04:00
Maxim Cournoyer 4bd8f4f302
gnu: python-jedi: Update to 0.12.1. 
* gnu/packages/python.scm (python-jedi): Update to 0.12.1.
[propagated-inputs]: Move python-parso here, as it is required at run time.
 2018-09-12 22:16:18 -04:00
Danny Milosavljevic 614cfd5c54
gnu: Add rust@1.20.0. 
* gnu/packages/rust.scm (rust-1.20): New variable.
 2018-09-13 00:25:01 +02:00
Ludovic Courtès aed0a59405
git-download: Rewrite 'git-predicate' using Guile-Git. 
Fixes <https://bugs.gnu.org/27925>.

* guix/git-download.scm (files->directory-tree)
(directory-in-tree?): Remove.
(git-file-list): New procedures.
(git-predicate): Use it instead of opening a pipe to 'git'.  Remove
directory tree hack and rely exclusively on inode/device numbers.
 2018-09-13 00:20:42 +02:00
Danny Milosavljevic 3763e7716c
gnu: rust@1.19.0: Remove superfluous install-file call. 
* gnu/packages/rust.scm (rust-1.19)[arguments]<#:phases>[build]: Remove
superfluous install-file call.
 2018-09-12 23:17:42 +02:00
Danny Milosavljevic 5a3fcf5b44
gnu: rust@1.19.0: Install rustdoc. 
* gnu/packages/rust.scm (rust-1.19)[arguments]<#:phases>[install]: Install
rustdoc.
 2018-09-12 23:17:42 +02:00
Danny Milosavljevic 0bcd1bc778
gnu: rust@1.19.0: Use match-lambda directly. 
Follow-up to 3159ef7c99.

* gnu/packages/rust.scm (rust-1.19)[arguments]<#:phases>[build]: Use
match-lambda directly.
 2018-09-12 23:17:42 +02:00
Nils Gillmann f006237c54
gnu: gnurl: Update to 7.61.1. 
* gnu/packages/gnunet.scm (gnurl): Update to 7.61.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-09-12 16:02:39 -04:00
Leo Famulari ff9008d8de
gnu: Zsh: Remove workaround required for Zsh 5.6. 
This is a followup to commit 5a5d3e3563.

* gnu/packages/shells.scm (zsh)[arguments]: Remove substitutions in 'patch-test'
phase.
 2018-09-12 15:21:42 -04:00
Pierre Neidhardt 4fa7f29f2a
gnu: emacs-hl-todo: Update to 1.9.0. 
* gnu/packages/emacs.scm (emacs-hl-todo): Update to 1.9.0.
 2018-09-12 19:51:26 +02:00
Ricardo Wurmus 4a89bdd196
gnu: python-scikit-learn: Update to 0.19.2. 
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.19.2.
[source]: Fetch from git.
[arguments]: Run tests before installation; replace "check" phase, add
"build-ext" phase; delete "reset-gzip-timestamps" phase.
[native-inputs]: Add python-pytest and python-pandas; remove python-nose.
 2018-09-12 19:35:02 +02:00
Pierre Neidhardt b002809f84
gnu: Add emacs-blimp. 
* gnu/packages/emacs.scm (emacs-blimp): New variable.
 2018-09-12 19:34:17 +02:00
Pierre Neidhardt 320105eadb
gnu: Add emacs-org-web-tools. 
* gnu/packages/emacs.scm (emacs-org-web-tools): New variable.
 2018-09-12 19:34:17 +02:00