Commit Graph

37749 Commits

Author SHA1 Message Date
Ricardo Wurmus 6ff6973502
gnu: r-genomicalignments: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.20.0.
2019-05-06 00:14:34 +02:00
Ricardo Wurmus 8671d1e9d6
gnu: r-summarizedexperiment: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.14.0.
2019-05-06 00:14:34 +02:00
Ricardo Wurmus 14561bb9e7
gnu: r-delayedarray: Update to 0.10.0.
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.10.0.
[propagated-inputs]: Add r-matrix.
2019-05-06 00:14:34 +02:00
Ricardo Wurmus d2e165496b
gnu: r-biostrings: Update to 2.52.0.
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.52.0.
2019-05-06 00:14:33 +02:00
Ricardo Wurmus e10b67c797
gnu: r-biocparallel: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.18.0.
2019-05-06 00:14:33 +02:00
Ricardo Wurmus 933571ddcd
gnu: r-biomart: Update to 2.40.0.
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.0.
2019-05-06 00:14:33 +02:00
Ricardo Wurmus a1b9378a8e
gnu: r-annotationdbi: Update to 1.46.0.
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.46.0.
2019-05-06 00:14:33 +02:00
Ricardo Wurmus 4aadfcd296
gnu: r-biobase: Update to 2.44.0.
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.44.0.
2019-05-06 00:14:33 +02:00
Ricardo Wurmus b35bc56a8a
gnu: r-genomicranges: Update to 1.36.0.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.36.0.
2019-05-06 00:14:33 +02:00
Ricardo Wurmus bc0e5bc12e
gnu: r-xvector: Update to 0.24.0.
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.24.0.
2019-05-06 00:14:32 +02:00
Ricardo Wurmus 5fadf39280
gnu: r-limma: Update to 3.40.0.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.40.0.
2019-05-06 00:14:32 +02:00
Ricardo Wurmus 0d094ad9ab
gnu: r-variantannotation: Update to 1.30.0.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.30.0.
[propagated-inputs]: Add r-rhtslib.
2019-05-06 00:14:32 +02:00
Ricardo Wurmus 1e3f53a489
gnu: r-edger: Update to 3.26.0.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.0.
2019-05-06 00:14:32 +02:00
Ricardo Wurmus 6dc05d0a86
gnu: r-genomeinfodb: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.20.0.
2019-05-06 00:14:32 +02:00
Ricardo Wurmus 38142114b7
gnu: r-iranges: Update to 2.18.0.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.18.0.
2019-05-06 00:14:32 +02:00
Ricardo Wurmus 192ddab3e5
gnu: r-s4vectors: Update to 0.22.0.
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.22.0.
2019-05-06 00:14:31 +02:00
Ricardo Wurmus 8bdf7d55be
gnu: r-bioccheck: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.20.0.
2019-05-06 00:14:31 +02:00
Ricardo Wurmus e01b72d225
gnu: r-biocstyle: Update to 2.12.0.
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.12.0.
2019-05-06 00:14:31 +02:00
Ricardo Wurmus 440af6482a
gnu: r-biocviews: Update to 1.52.0.
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.52.0.
2019-05-06 00:14:31 +02:00
Ricardo Wurmus ce52cab000
gnu: r-grohmm: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.18.0.
2019-05-06 00:14:31 +02:00
Ricardo Wurmus 49f30903f0
gnu: r-shortread: Update to 1.42.0.
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.42.0.
2019-05-06 00:14:31 +02:00
Ricardo Wurmus fe40f55094
gnu: r-gostats: Update to 2.50.0.
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.50.0.
2019-05-06 00:14:30 +02:00
Ricardo Wurmus 4d88dbe6eb
gnu: r-category: Update to 2.50.0.
* gnu/packages/bioinformatics.scm (r-category): Update to 2.50.0.
2019-05-06 00:14:30 +02:00
Ricardo Wurmus 08d2a26d47
gnu: r-gseabase: Update to 1.46.0.
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.46.0.
2019-05-06 00:14:30 +02:00
Ricardo Wurmus aa51a241c5
gnu: r-rbgl: Update to 1.60.0.
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.60.0.
[propagated-inputs]: Add r-bh.
2019-05-06 00:14:30 +02:00
Ricardo Wurmus 7f737246d8
gnu: r-annotationforge: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.26.0.
2019-05-06 00:14:30 +02:00
Ricardo Wurmus 0a58282de7
gnu: r-dexseq: Update to 1.30.0.
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.30.0.
2019-05-06 00:14:30 +02:00
Ricardo Wurmus 9a39193d45
gnu: r-deseq2: Update to 1.24.0.
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.24.0.
2019-05-06 00:14:30 +02:00
Ricardo Wurmus 0183163d1e
gnu: r-genefilter: Update to 1.66.0.
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.66.0.
2019-05-06 00:14:29 +02:00
Ricardo Wurmus 295f35dfb9
gnu: r-preprocesscore: Update to 1.46.0.
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.46.0.
2019-05-06 00:14:29 +02:00
Ricardo Wurmus 52b4703c08
gnu: r-rgraphviz: Update to 2.28.0.
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.28.0.
2019-05-06 00:14:29 +02:00
Ricardo Wurmus 3b13b6d777
gnu: r-units: Update to 0.6-3.
* gnu/packages/cran.scm (r-units): Update to 0.6-3.
2019-05-06 00:14:29 +02:00
Ricardo Wurmus 3961b3b900
gnu: Add r-dqrng.
* gnu/packages/cran.scm (r-dqrng): New variable.
2019-05-06 00:14:29 +02:00
Ricardo Wurmus b8d6dffbdd
gnu: Add r-sitmo.
* gnu/packages/cran.scm (r-sitmo): New variable.
2019-05-06 00:14:29 +02:00
Ricardo Wurmus 0c8960df13
gnu: Add r-clue.
* gnu/packages/cran.scm (r-clue): New variable.
2019-05-06 00:14:29 +02:00
Ricardo Wurmus be23c491cb
gnu: Add r-batchtools.
* gnu/packages/cran.scm (r-batchtools): New variable.
2019-05-06 00:14:28 +02:00
Ricardo Wurmus 04bf86ba9f
gnu: Add r-blme.
* gnu/packages/cran.scm (r-blme): New variable.
2019-05-06 00:14:28 +02:00
Ricardo Wurmus 2b9d4f5866
gnu: Add r-scrime.
* gnu/packages/cran.scm (r-scrime): New variable.
2019-05-06 00:14:28 +02:00
Ricardo Wurmus 78735b9f34
gnu: Add r-grimport2.
* gnu/packages/cran.scm (r-grimport2): New variable.
2019-05-06 00:14:28 +02:00
Ricardo Wurmus 8128189976
gnu: Add r-rcpphnsw.
* gnu/packages/cran.scm (r-rcpphnsw): New variable.
2019-05-06 00:14:28 +02:00
Ricardo Wurmus 993912905d
gnu: Add r-biocsingular.
* gnu/packages/bioconductor.scm (r-biocsingular): New variable.
2019-05-06 00:14:28 +02:00
Ricardo Wurmus 72032c9d5f
gnu: Add r-base64url.
* gnu/packages/cran.scm (r-base64url): New variable.
2019-05-06 00:14:27 +02:00
Miguel 28b26eca45
installer: Fix typo.
* gnu/installer/newt/menu.scm (run-menu-page): Add missing space after
period.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 17:21:18 +02:00
Brendan Tildesley dcfa0acd7b
Correct email and license info for Brendan Tildesley.
* gnu/packages/audio.scm: Correct email and license info.
* gnu/packages/ebook.scm: Correct email and license info.
* gnu/packages/fonts.scm: Correct email and license info.
* gnu/packages/freedesktop.scm: Correct email and license info.
* gnu/packages/gnome.scm: Correct email and license info.
* gnu/packages/linux.scm: Correct email and license info.
* gnu/packages/lxde.scm: Correct email and license info.
* gnu/packages/python-web.scm: Correct email and license info.
* gnu/packages/python-xyz.scm: Correct email and license info.
* gnu/packages/python.scm: Correct email and license info.
* gnu/packages/video.scm: Correct email and license info.
* gnu/packages/web.scm: Correct email and license info.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 17:16:51 +02:00
Danny Milosavljevic ee3ce0d71d
gnu: calibre: Update to 3.42.0.
* gnu/packages/ebook.scm (calibre): Update to 3.42.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
Brendan Tildesley 421c5e92f9
gnu: calibre: Shorten long line.
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[build-extra]: Shorten long line.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
Brendan Tildesley d6dfe8b634
gnu: calibre: Install man pages.
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[install-man-pages]:
New phase.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
Brendan Tildesley f3f017dbf0
gnu: calibre: Delete various junk from source.
* gnu/packages/ebook.scm (calibre)[source](snippet): Delete various junk from
source.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
Brendan Tildesley 62a97dc0fb
gnu: calibre: Remove libxrender as an input.
* gnu/packages/ebook.scm (calibre)[inputs]: Remove libxrender.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
Brendan Tildesley 68435a7f55
gnu: calibre: Unbundle python2-odfpy.
* gnu/packages/ebook.scm (calibre)[snippet]: Remove all of src/odf.
[inputs]: Add python2-odfpy.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
Brendan Tildesley 7312a7d073
gnu: calibre: Remove some comments.
* gnu/packages/ebook.scm (calibre): There is no unrar in Guix currently, and
  pdftohtml is in poppler, so we can remove this comment.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
Brendan Tildesley eb5f620134
gnu: calibre: Enable tests.
* gnu/packages/ebook.scm (calibre): Enable tests.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
Brendan Tildesley cbe399e736
gnu: calibre: Disable sqlite test.
* gnu/packages/patches/calibre-remove-test-sqlite.patch: New file.
* gnu/packages/ebook.scm (calibre)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
Brendan Tildesley 4bcd0647b7
gnu: calibre: Disable Qt test.
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[configure]: Disable
Qt test.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
Brendan Tildesley f89f5abada
gnu: calibre: Disable bs4 test.
* gnu/packages/patches/calibre-remove-test-bs4.patch: New file.
* gnu/packages/ebook.scm (calibre)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
Brendan Tildesley 6e1ab5fadb
gnu: calibre: Use "linux.py" to install desktop files.
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[configure]: Modify.
[install-mimetypes]: Remove.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
Brendan Tildesley ad74978a95
gnu: Add python-soupsieve, python2-soupsieve.
* gnu/packages/python-xyz.scm (python-soupsieve): New variable.
(python2-soupsieve): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
Brendan Tildesley b01cde1ac9
gnu: calibre: Disable tests that require networking.
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[configure]: Modify.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
Brendan Tildesley 15871b4087
gnu: calibre: Remove unrar test.
* gnu/packages/patches/calibre-remove-test-unrar.patch: New file.
* gnu/packages/ebook.scm (calibre)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
Brendan Tildesley c187c9d786
gnu: python-regex, python2-regex: Update to 2019.04.14.
* gnu/packages/python.scm (python-regex, python2-regex): Update to 2019.04.14.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
Brendan Tildesley adc25b68b1
gnu: calibre: Add python2-html2text as an input.
* gnu/packages/ebook.scm (calibre)[inputs]: Add python2-html2text.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
Brendan Tildesley 7a82ceb7bb
gnu: Add python-html2text, python2-html2text.
* gnu/packages/python-web.scm (python-html2text): New variable.
(python2-html2text): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
Brendan Tildesley 13068a8ccf
gnu: calibre: Move font unbundling to after check phase.
* gnu/packages/ebook.scm (calibre)[snippet]: Modify.
[native-inputs]: Remove font-liberation.
[inputs]: Add font-liberation.
[arguments]<#:phases>[install-font-liberation]: Delete phase.
[unbundle-font-liberation]: New phase.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
Brendan Tildesley 4f29902080
gnu: calibre: Add missing dependencies as indicated by tests.
* gnu/packages/ebook.scm (calibre)[inputs]: Add python2-html5lib,
python2-psutil.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
Brendan Tildesley b0038957f5
gnu: calibre: Build rapydscript.
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[build-extra]: Modify.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:19 +02:00
Brendan Tildesley d243b41dd0
gnu: calibre: Use system mathjax.
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[build-extra]:
New phase.
[inputs]: Add js-mathjax.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:19 +02:00
Brendan Tildesley 4e6f8a1442
gnu: calibre: Update to 3.41.3.
* gnu/packages/ebook.scm (calibre): Update to 3.41.3.
[inputs]: Replace python2-cssutils by python2-css-parser.
[snippet]: Modify.
* gnu/packages/patches/calibre-use-packaged-feedparser.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:19 +02:00
Tobias Geerinckx-Rice c8e214e80d
gnu: wgetpaste: Make all dependencies explicit.
* gnu/packages/wget.scm (wgetpaste)[arguments]: Replace limited
‘use-inputs’ phase with a ‘wrap-program’ one.
2019-05-05 00:10:44 +02:00
Tobias Geerinckx-Rice 4d3990c9f3
gnu: wgetpaste: Return #t from all phases.
* gnu/packages/wget.scm (wgetpaste)[arguments]: Return #t from ‘install’ phase.
2019-05-05 00:10:44 +02:00
Tobias Geerinckx-Rice fbc2531395
gnu: tor: Remove explicit hardening flags.
* gnu/packages/tor.scm (tor)[arguments]: Remove #:configure-flags that
merely confirm the defaults.
2019-05-05 00:10:24 +02:00
Leo Famulari 0d6cfaa3dd
gnu: nano: Update to 4.2.
* gnu/packages/nano.scm (nano): Update to 4.2.
2019-05-04 15:43:22 -04:00
Julien Lepiller 8aeef53497
gnu: coq-bignums: Update to 8.9.0.
* gnu/packages/coq.scm (coq-bignums): Update to 8.9.0.
2019-05-04 19:41:44 +02:00
Julien Lepiller f5b0d90490
gnu: coq-mathcomp: Update to 1.8.0.
* gnu/packages/coq.scm (coq-mathcomp): Update to 1.8.0.
2019-05-04 19:41:35 +02:00
Julien Lepiller 1f1ea9c0cb
gnu: coq-gappa: Update to 1.3.4.
* gnu/packages/coq.scm (coq-gappa): Update to 1.3.4.
2019-05-04 19:41:28 +02:00
Julien Lepiller e03e1b5584
gnu: coq: Update to 8.9.0.
* gnu/packages/coq.scm (coq): Update to 8.9.0.
(coq-autosubst): Update to latest commit.
(coq-equations): Update to 1.2-beta2.
2019-05-04 19:41:04 +02:00
gabrielhdt 187f9636f1
gnu: ocaml-menhir: Update to 20181113.
* gnu/packages/ocaml.scm (ocaml-menhir): Update to 20181113.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-05-03 20:46:22 +02:00
Sam 52c3cb2687
gnu: Add python-django-extensions.
* gnu/packages/django.scm (python-django-extensions): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-03 17:47:30 +02:00
Sam 8d73558d50
gnu: Add python-django-taggit.
* gnu/packages/django.scm (python-django-taggit): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-03 17:47:30 +02:00
Ludovic Courtès 78d6d5e8d9
shepherd: Include /etc/localtime in service containers.
Fixes a bug whereby Tor (for example) would emit syslog messages with a
UTC timestamp instead of local time.

* gnu/build/shepherd.scm (default-mounts): Add /etc/localtime to
MAPPINGS.
2019-05-03 17:47:29 +02:00
Tobias Geerinckx-Rice c8bb86f51c
gnu: tor: Update to 0.4.0.5.
* gnu/packages/tor.scm (tor): Update to 0.4.0.5.
2019-05-03 15:22:22 +02:00
Brendan Tildesley 02eb70bd21
gnu: Add python-css-parser, python2-css-parser.
* gnu/packages/python-web.scm (python-css-parser, python2-css-parser): New
variables.

Signed-off-by: Andreas Enge <andreas@enge.fr>
2019-05-03 13:58:22 +02:00
Brendan Tildesley c2dd07aba5
gnu: web: Change 'l:' prefix to 'license:'.
* gnu/packages/web.scm: Change #:prefix l: to #:prefix license:.

Signed-off-by: Andreas Enge <andreas@enge.fr>
2019-05-03 13:58:21 +02:00
Ludovic Courtès 9d2d9cb14b
installer: Do not sort the guided partition schemes in the selection page.
Previously, the "Everything is one partition" entry would come first in
English but it would be second in French.  This change keeps it the
first choice regardless of the language.

* gnu/installer/newt/partition.scm (run-scheme-page): Pass
 #:sort-listbox-items? to 'run-scheme-page'.
2019-05-03 13:50:49 +02:00
Ludovic Courtès ecb0df6817
installer: Ensure 'packages' field is a superset of '%base-packages'.
Fixes <https://bugs.gnu.org/35541>.
Reported by Florian Pelz <pelzflorian@pelzflorian.de>.

* gnu/installer/services.scm (system-services->configuration): Generate
a snippet that appends PACKAGES to %BASE-PACKAGES.
2019-05-03 13:50:49 +02:00
ison 3e85909044
Correct email address for ison.
* .mailmap, gnu/packages/lxde.scm: Update email address.

Signed-off-by: Andreas Enge <andreas@enge.fr>
2019-05-03 08:45:55 +02:00
Ricardo Wurmus d7afe74d60
gnu: r-cluster: Update to 2.0.9.
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.9.
[inputs]: Move gfortran from here...
[native-inputs]: ...to here.
2019-05-03 08:00:54 +02:00
Ricardo Wurmus f66f40400c
gnu: r-irkernel: Update to 1.0.1.
* gnu/packages/cran.scm (r-irkernel): Update to 1.0.1.
2019-05-03 08:00:54 +02:00
Ricardo Wurmus 27b4bfbe4b
gnu: r-ouch: Update to 2.14-1.
* gnu/packages/cran.scm (r-ouch): Update to 2.14-1.
2019-05-03 08:00:53 +02:00
Ricardo Wurmus dea3df2bd1
gnu: r-fs: Update to 1.3.0.
* gnu/packages/cran.scm (r-fs): Update to 1.3.0.
2019-05-03 08:00:49 +02:00
Mark H Weaver 8d5edc9cea
gnu: linux-libre: Update to 5.0.11.
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.11.
(%linux-libre-hash): Update hash.
2019-05-02 22:50:01 -04:00
Mark H Weaver c52fb6e11d
gnu: linux-libre@4.19: Update to 4.19.38.
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.38.
(%linux-libre-4.19-hash): Update hash.
2019-05-02 22:49:14 -04:00
Mark H Weaver 4dc3f7c7dc
gnu: linux-libre@4.14: Update to 4.14.115.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.115.
(%linux-libre-4.14-hash): Update hash.
2019-05-02 22:48:26 -04:00
Mark H Weaver e2474df6ee
gnu: linux-libre@4.9: Update to 4.9.172.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.172.
2019-05-02 22:47:46 -04:00
Ricardo Wurmus 82329a17f4
gnu: pluma: Use older version of gtksourceview.
Reported by L p R n d n <guix@lprndn.info>.
Fixes <https://bugs.gnu.org/35535>.

* gnu/packages/mate.scm (pluma)[inputs]: Replace gtksourceview with
gtksourceview-3.
2019-05-02 23:12:39 +02:00
Ricardo Wurmus 2f869b0279
gnu: mate-applets: Use older version of gtksourceview.
Reported by L p R n d n <guix@lprndn.info>.

* gnu/packages/mate.scm (mate-applets)[inputs]: Replace gtksourceview with
gtksourceview-3.
2019-05-02 23:12:38 +02:00
宋文武 48f19e60c4
gnu: le-certs: Update hashes.
They added the 3 missing '^M' to all pem certs.

* gnu/packages/certs.scm (le-certs)[inputs]: Update the hashes of
isrgrootx1.pem, letsencryptauthorityx3.pem, letsencryptauthorityx4.pem.
2019-05-02 21:40:41 +08:00
Ludovic Courtès 746ac457cc
Merge branch 'version-1.0.0' 2019-05-02 15:32:30 +02:00
Julien Lepiller c457f109be
gnu: php: Update to 7.3.5.
* gnu/packages/php.scm (php): Update to 7.3.5.
2019-05-02 14:53:23 +02:00
Pierre Neidhardt d5f4d5b683
gnu: emacs-emms: Update to 5.2.
* gnu/packages/emacs-xyz.scm (emacs-emms): Update to 5.2.
2019-05-02 11:54:39 +02:00
Nicolas Goaziou 5f83b5153a
gnu: python-duniterpy: Update to 0.53.1.
* gnu/packages/finance.scm (python-duniterpy): Update to 0.53.1.
2019-05-02 10:22:36 +02:00
Nicolas Goaziou 45a37f5b05
gnu: emacs-relint: Update to 1.7.
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.7.
2019-05-02 10:14:18 +02:00
Nicolas Goaziou d34984b9fe
gnu: emacs-xr: Update to 1.11.
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.11.
2019-05-02 10:13:20 +02:00
Rutger Helling c2974d1e46
gnu: faudio: Update to 19.05.
* gnu/packages/audio.scm (faudio): Update to 19.05.
2019-05-02 08:57:24 +02:00
Tobias Geerinckx-Rice 9bec3ba4ca
gnu: python-flexmock: Update to 0.10.4.
* gnu/packages/check.scm (python-flexmock): Update to 0.10.4.
2019-05-02 00:52:33 +02:00
Marius Bakke 14da3daafc
gnu: termite: Update to 15.
* gnu/packages/terminals.scm (termite): Update to 15.
2019-05-01 22:15:02 +02:00
Marius Bakke 03c59a2525
gnu: vte-ng: Update to 0.56.2.a.
* gnu/packages/gnome.scm (vte-ng): Update to 0.56.2.a.
[native-inputs]: Add GCC-7.
[arguments]: Add GCC7 workaround.
2019-05-01 22:15:02 +02:00
Marius Bakke a0d44bb09f
gnu: spice: Update to 0.14.2 [fixes CVE-2019-3813].
* gnu/packages/spice.scm (spice): Update to 0.14.2.
2019-05-01 22:15:01 +02:00
Marius Bakke a550da6247
gnu: spice-protocol: Update to 0.14.0.
* gnu/packages/spice.scm (spice-protocol): Update to 0.14.0.
(spice-protocol-0.12): New public variable.
(spice-gtk)[propagated-inputs]: Change SPICE-PROTOCOL to SPICE-PROTOCOL-0.12.
2019-05-01 22:15:01 +02:00
Marius Bakke 15ada26abb
gnu: signify: Update to 25.
* gnu/packages/crypto.scm (signify): Update to 25.
2019-05-01 22:15:01 +02:00
Marius Bakke a5006ede7f
gnu: signify: Don't use unstable tarball.
* gnu/packages/crypto.scm (signify)[source]: Change to GIT-FETCH.
2019-05-01 22:15:01 +02:00
Marius Bakke f99418e3f3
gnu: ungoogled-chromium: Update to 74.0.3729.131-0.9e33022 [fixes CVE-2019-5824].
* gnu/packages/chromium.scm (%chromium-version): Update to 74.0.3729.131.
(ungoogled-chromium-source): Update Chromium hash.
2019-05-01 22:15:01 +02:00
Marius Bakke ca86b0bae3
gnu: ungoogled-chromium: Unbundle openjpeg again.
This is a follow-up to commit 40594fdcb9e360d68e5444771b5467ba5bbbfcf2.

* gnu/packages/chromium.scm (%preserved-third-party-files): Remove
'third_party/pdfium/third_party/libopenjpeg20'.
(ungoogled-chromium)[arguments]: Fix typo in #:configure-flags.
2019-05-01 22:15:01 +02:00
Julien Lepiller bd9d5dbb86
gnu: php: Disable failing tests on armhf.
* gnu/packages/php.scm (php)[arguments]: Disable two failing tests on
armhf.
2019-05-01 21:13:34 +02:00
Ludovic Courtès 9c941364bf
vm: Build ISOs and VM images in a UTF-8 environment.
Fixes a bug whereby building an image containing non-ASCII file names
would fail due to improper decoding of file names.

* gnu/system/vm.scm (iso9660-image, qemu-image): Set GUIX_LOCPATH and
call 'setlocale' in the build environment.
2019-05-01 21:11:22 +02:00
Ludovic Courtès 17acc215bf
gnu: guix: Update to 326dcbf. 2019-05-01 17:29:02 +02:00
Ludovic Courtès 326dcbf1b3
gnu: guix: Update to 1.0.0. 2019-05-01 14:11:34 +02:00
Ricardo Wurmus ae66feeee0
gnu: r-irkernel: Update to 1.0.0.
* gnu/packages/cran.scm (r-irkernel): Update to 1.0.0.
2019-05-01 11:13:38 +02:00
Ricardo Wurmus 944d4c483a
gnu: r-officer: Update to 0.3.4.
* gnu/packages/cran.scm (r-officer): Update to 0.3.4.
2019-05-01 10:10:04 +02:00
Ricardo Wurmus 0b5b9d69a8
gnu: r-lmtest: Update to 0.9-37.
* gnu/packages/cran.scm (r-lmtest): Update to 0.9-37.
2019-05-01 10:09:52 +02:00
Ricardo Wurmus 8bc8cea987
gnu: r-shinyfiles: Update to 0.7.3.
* gnu/packages/cran.scm (r-shinyfiles): Update to 0.7.3.
2019-05-01 10:09:10 +02:00
Ludovic Courtès 4c13ccbf39
vm-image: Add 'label' field.
* gnu/system/examples/vm-image.tmpl (label): New field.
2019-05-01 09:33:54 +02:00
Marius Bakke af74e4350f
gnu: ungoogled-chromium: Update to 74.0.3729.108-0.9e33022.
* gnu/packages/chromium.scm (%preserved-third-party-files): Add four new
directories, delete three obsolete.
(%chromium-version, %ungoogled-revision, %debian-revision): Update for 74.
(ungoogled-chromium-source): Update hashes.  Ignore Debians GCC6 patches.
(ungoogled-chromium)[arguments]: Add "use_system_openjpeg" to #:configure-flags.
2019-05-01 01:31:31 +02:00
Marius Bakke 947134492e
gnu: Remove greenisland.
* gnu/packages/display-managers.scm (greenisland): Remove variable.
2019-05-01 01:31:31 +02:00
Vagrant Cascadian 4ee55938de
gnu: u-boot-tools: Only run full test suite on x86_64.
* gnu/packages/bootloaders (u-boot-tools)[arguments]<#:phases>[check]:
Modify phase.
[check-x86]: New phase.
[patch]: New phase.
2019-04-30 13:58:37 -07:00
Tobias Geerinckx-Rice 8d2d68a5fb
gnu: ocaml-migrate-parsetree: Name checkout.
* gnu/packages/ocaml.scm (ocaml-migrate-parsetree)[source]: Add FILE-NAME.
2019-04-30 21:07:13 +02:00
Tobias Geerinckx-Rice b7a4cb5206
gnu: ocaml-opam-file-format: Name checkout.
* gnu/packages/ocaml.scm (ocaml-opam-file-format)[source]: Add FILE-NAME.
2019-04-30 21:07:12 +02:00
Tobias Geerinckx-Rice ad09f3b024
gnu: sbcl-cl-syntax: Name checkout.
* gnu/packages/lisp.scm (sbcl-cl-syntax)[source]: Add FILE-NAME.
2019-04-30 21:07:12 +02:00
Tobias Geerinckx-Rice 2af4698016
gnu: emacs-dired-sidebar: Name checkout.
* gnu/packages/emacs-xyz.scm (emacs-dired-sidebar)[source]: Add FILE-NAME.
2019-04-30 21:07:12 +02:00
Tobias Geerinckx-Rice 0abf2d91cf
gnu: sbcl-rfc2388: Name checkout.
* gnu/packages/lisp.scm (sbcl-rfc2388)[source]: Add FILE-NAME.
2019-04-30 21:07:12 +02:00
Tobias Geerinckx-Rice 7026f6b27e
gnu: ocaml-ppx-typerep-conv: Name checkout.
* gnu/packages/ocaml.scm (ocaml-ppx-typerep-conv)[source]: Add FILE-NAME.
2019-04-30 21:07:12 +02:00
Tobias Geerinckx-Rice 3a75925e73
gnu: ocaml-ppx-hash: Name checkout.
* gnu/packages/ocaml.scm (ocaml-ppx-hash)[source]: Add FILE-NAME.
2019-04-30 21:07:12 +02:00
Tobias Geerinckx-Rice 4a6de00217
gnu: ocaml-ppx-enumerate: Name checkout.
* gnu/packages/ocaml.scm (ocaml-ppx-enumerate)[source]: Add FILE-NAME.
2019-04-30 21:07:12 +02:00
Tobias Geerinckx-Rice fbd08d42a6
gnu: ocaml-core: Name checkout.
* gnu/packages/ocaml.scm (ocaml-core)[source]: Add FILE-NAME.
2019-04-30 21:07:11 +02:00
Tobias Geerinckx-Rice 5924f621bb
gnu: sbcl-trivial-backtrace: Name checkout.
* gnu/packages/lisp.scm (sbcl-trivial-backtrace)[source]: Add FILE-NAME.
2019-04-30 21:07:11 +02:00
Tobias Geerinckx-Rice a97fc9cd8e
gnu: sbcl-myway: Name checkout.
* gnu/packages/lisp.scm (sbcl-myway)[source]: Add FILE-NAME.
2019-04-30 21:07:11 +02:00
Tobias Geerinckx-Rice 8f4b57000d
gnu: emacs-helm-pass: Name checkout.
* gnu/packages/emacs-xyz.scm (emacs-helm-pass)[source]: Add FILE-NAME.
2019-04-30 21:07:11 +02:00
Tobias Geerinckx-Rice 2ba3dc0bdf
gnu: emacs-zotxt: Name checkout.
* gnu/packages/emacs-xyz.scm (emacs-zotxt)[source]: Add FILE-NAME.
2019-04-30 21:07:11 +02:00
Vagrant Cascadian 6f5be83cd7
gnu: u-boot-tools: Only run full test suite on x86_64.
* gnu/packages/bootloaders (u-boot-tools)[arguments]<#:phases>[check]:
Modify phase.
[check-x86]: New phase.
[patch]: New phase.
2019-04-30 19:49:16 +02:00
Ludovic Courtès 094aaa1a1e
gnu: gexiv2: Skip failing test on 32-bit platforms.
* gnu/packages/gnome.scm (gexiv2)[arguments]: New field.
2019-04-30 18:29:10 +02:00
Tobias Geerinckx-Rice 9b241d4ce2
gnu: python-nose-timer: Update to 0.7.5.
* gnu/packages/check.scm (python-nose-timer): Update to 0.7.5.
2019-04-30 17:11:52 +02:00
Tobias Geerinckx-Rice e976e199c4
gnu: sbcl-cl+ssl: Name checkout.
* gnu/packages/lisp.scm (sbcl-cl+ssl)[source]: Add FILE-NAME.
2019-04-30 17:11:36 +02:00
Tobias Geerinckx-Rice e76a972bde
gnu: ghc-esqueleto: Name checkout.
* gnu/packages/haskell.scm (ghc-esqueleto)[source]: Add FILE-NAME.
2019-04-30 17:05:22 +02:00
Tobias Geerinckx-Rice 9e6cce4440
gnu: ocaml-ppx-tools: Name checkout.
* gnu/packages/ocaml.scm (ocaml-ppx-tools)[source]: Add FILE-NAME.
2019-04-30 17:04:13 +02:00
Tobias Geerinckx-Rice 45ea12f31e
gnu: sbcl-cl-base64: Name checkout.
* gnu/packages/lisp.scm (sbcl-cl-base64)[source]: Add FILE-NAME.
2019-04-30 17:03:08 +02:00
Tobias Geerinckx-Rice 4fdad3edc3
gnu: eid-mw: Name checkout.
* gnu/packages/security-token.scm (eid-mw)[source]:
Add FILE-NAME.
2019-04-30 17:02:38 +02:00
Ludovic Courtès e4b2866cd0
gnu: libplist: Run tests sequentially.
Fixes <https://bugs.gnu.org/35501>.
Reported by Brendan Tildesley <mail@brendan.scot>.

* gnu/packages/libusb.scm (libplist)[arguments]: New field.
2019-04-30 16:47:29 +02:00
Marius Bakke 5a3d3d6a3b
gnu: Add i3lock.
* gnu/packages/wm.scm (i3lock): New public variable.

(cherry picked from commit b6afc35051)
2019-04-30 15:09:49 +02:00
Tobias Geerinckx-Rice 378b8a6446
gnu: youtube-dl: Update to 2019.04.30.
* gnu/packages/video.scm (youtube-dl): Update to 2019.04.30.
2019-04-30 14:30:18 +02:00
Tobias Geerinckx-Rice eea094ccdc
gnu: ruby-rest-client: Fix lost ,s.
* gnu/packages/ruby.scm (ruby-rest-client)[native-inputs]:
Move unquotes to their operands.
2019-04-30 13:03:56 +02:00
Julien Lepiller b77c8ddbe1
gnu: maven: Update to 3.6.1.
* gnu/packages/maven.scm (maven-artifact): Update to 3.6.1.
2019-04-30 12:41:19 +02:00