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Author SHA1 Message Date
Ricardo Wurmus 5edc24ec2c
gnu: Add emacs-avy. 
* gnu/packages/emacs.scm (emacs-avy): New variable.
 2016-06-20 07:06:58 +02:00
Ricardo Wurmus 12db29baaf
gnu: Add emacs-ivy. 
* gnu/packages/emacs.scm (emacs-ivy): New variable.
 2016-06-20 07:06:58 +02:00
Ricardo Wurmus 79b3d3ea58
gnu: Add emacs-hydra. 
* gnu/packages/emacs.scm (emacs-hydra): New variable.
 2016-06-20 07:06:57 +02:00
Ricardo Wurmus db1a496071
gnu: Add emacs-org-bullets. 
* gnu/packages/emacs.scm (emacs-org-bullets): New variable.
 2016-06-20 07:04:46 +02:00
Ludovic Courtès 04eb0fab3a
gnu: guix: Add 'current-guix' thunk. 
* gnu/packages/package-management.scm (source-file?)
(make-git-predicate, current-guix): New procedures.
 2016-06-20 00:52:53 +02:00
Efraim Flashner a0adbb0463
gnu: openldap: Use bdb-5.3. 
* gnu/packages/openldap.scm (openldap)[inputs]: Switch to bdb-5.3.
 2016-06-19 22:20:43 +03:00
Efraim Flashner 557fa39caa
gnu: Add bdb-5.3. 
* gnu/packages/databases.scm (bdb-5.3): New variable.
 2016-06-19 22:19:58 +03:00
Mark H Weaver 84530eef76
Merge branch 'master' into core-updates 2016-06-19 14:22:53 -04:00
Mark H Weaver 3ebba94d45
gnu: libxslt: Replace with 1.1.29 [fixes CVE-2016-{1683,1684}]. 
* gnu/packages/xml.scm (libxslt)[replacement]: New field.
(libxslt/fixed): New variable.
 2016-06-19 13:59:01 -04:00
Ricardo Wurmus cb1436d8d2
gnu: synthv1: Update to 0.7.5. 
* gnu/packages/music.scm (synthv1): Update to 0.7.5.
 2016-06-18 21:26:58 +02:00
Ricardo Wurmus 669b7b83d8
gnu: Add lbzip2. 
* gnu/packages/compression.scm (lbzip2): New variable.
 2016-06-18 19:49:08 +02:00
Ricardo Wurmus 7c438099ac
gnu: Add emacs-multiple-cursors. 
* gnu/packages/emacs.scm (emacs-multiple-cursors): New variable.
 2016-06-18 18:06:29 +02:00
Ludovic Courtès e8ac1f8f1f
gnu: Add guile-sqlite3. 
* gnu/packages/guile.scm (guile-sqlite3): New variable.
 2016-06-18 15:54:45 +02:00
宋文武 87a16de744
gnu: bluez: Install 'org.bluez.obex.service' and fix '97-hid2hci.rules'. 
* gnu/packages/linux.scm (bluez)[arguments]: Add 'post-install' phase.
 2016-06-18 09:53:14 +08:00
宋文武 c80920462e
gnu: bluez: Update to 5.40. 
* gnu/packages/linux.scm (bluez): Update to 5.40.
 2016-06-18 09:53:14 +08:00
宋文武 f3dbc62664
gnu: bluez: Set sysconfdir and localstatedir. 
* gnu/packages/linux.scm (bluez)[arguments]: Add '--sysconfdir=/etc'
and '--localstatedir=/var'.
 2016-06-18 09:53:14 +08:00
Daniel Pimentel 0de78c95b5
gnu: Add python2-jsonrpclib 
* gnu/packages/python.scm (python2-jsonrpclib): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-06-17 20:20:11 -04:00
Ricardo Wurmus d1dbeddd55
gnu: Add emacs-company. 
* gnu/packages/emacs.scm (emacs-company): New variable.
 2016-06-17 21:18:19 +02:00
Leo Famulari 65924b10bc
gnu: certbot, python-acme: Update to 0.8.1. 
These packages should be updated together.

* gnu/packages/tls.scm (certbot): Update to 0.8.1.
(python-acme, python2-acme): Update to 0.8.1
 2016-06-17 14:32:32 -04:00
Ludovic Courtès c0eeccbc24
Merge branch 'master' into core-updates 2016-06-17 15:48:27 +02:00
Ludovic Courtès 56501d3b17
gnu: netpbm: Remove timestamps from build products. 
* gnu/packages/netpbm.scm (netpbm)[source]: Patch
"buildtools/stamp-date".
 2016-06-17 15:41:48 +02:00
Ludovic Courtès 61dc82d9b9
gnu: netpbm: Look for 'gsc' instead of 'gs'. 
This is a followup to commit eb354bdacb.

* gnu/packages/netpbm.scm (netpbm)[arguments]: In 'configure' phase,
patch 'pstopnm.c' to look for 'gsc'.
 2016-06-17 15:21:11 +02:00
Efraim Flashner bced395cab
gnu: aria2: Update to 1.24.0. 
* gnu/packages/bittorrent.scm (aria2): Updat eto 1.24.0.
 2016-06-17 15:41:45 +03:00
Efraim Flashner 025597393c
gnu: libqtxdg: Move qtbase to propagated-inputs. 
* gnu/packages/lxqt.scm (libqtxdg)[inputs]: Move qtbase ...
[propagated-inputs]: ... to here.

This is a follow-up to aa450b2bc4.
 2016-06-17 09:14:12 +03:00
Efraim Flashner 668d2352e0
gnu: enlightenment: Update to 0.20.9. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.20.9.
[home-page]: Use https.
 2016-06-17 06:52:18 +03:00
Efraim Flashner feabb770e1
gnu: python-efl: Rebuild generated C files. 
* gnu/packages/enlightenment.scm (python-efl)[arguments]: Replace 'build
phase to set 'ENABLE_CYTHON=1'.
[native-inputs]: python-cython.
 2016-06-17 06:52:18 +03:00
Ben Woodcroft 2e6973222d
gnu: Add python-bz2file. 
* gnu/packages/python.scm (python-bz2file, python2-bz2file): New
variables.
 2016-06-17 11:08:27 +10:00
ng0 1ee4274c96
gnu: gnupg: Update to 2.1.13. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.13.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-06-16 19:51:08 -04:00
Efraim Flashner 1ccb319241
gnu: lxqt-common: Add missing inputs. 
* gnu/packages/lxqt.scm (lxqt-common)[inputs]: Add qtbase,
qttools, qtx11extras.
 2016-06-16 21:14:53 +03:00
Efraim Flashner e099d2a66f
gnu: lxqt-session: Add missing inputs. 
* gnu/packages/lxqt.scm (lxqt-session)[inputs]: Add qtbase,
qttools, qtx11extras.
 2016-06-16 21:14:52 +03:00
Efraim Flashner 5c733afd4f
gnu: liblxqt: Add missing inputs. 
* gnu/packages/lxqt.scm (liblxqt)[inputs]: Add qtbase,
qttools, qtx11extras.
 2016-06-16 21:14:51 +03:00
Efraim Flashner aa450b2bc4
gnu: libqtxdg: Build with qtbase. 
* gnu/packages/lxqt.scm (libqtxdg)[propagated-inputs]: Remove qt.
[inputs]: Add qtbase.
 2016-06-16 21:12:38 +03:00
Efraim Flashner 3282442be9
gnu: lxqt: Update uris. 
* gnu/packages/lxqt.scm (libqtxdg, liblxqt, lxqt-common,
lxqt-session)[source]: Project tarballs have been replaced with Github
archive tarballs.
 2016-06-16 21:12:32 +03:00
Efraim Flashner 654116c158
gnu: starman: Update to 0.4014. 
* gnu/packages/web.scm (starman): Update to 0.4014.
 2016-06-16 18:06:42 +03:00
Efraim Flashner 76806c54ed
gnu: calibre: Build with qtbase. 
* gnu/packages/ebook.scm (calibre)[inputs]: Remove qt, add qtbase.
[native-inputs]: Remove qt, add qtbase.
 2016-06-16 18:06:42 +03:00
Efraim Flashner 64e8be679c
gnu: avidemux: Build with modular qt. 
* gnu/packages/video.scm (avidemux)[inputs]: Remove qt, add qtbase, qttools.
 2016-06-16 18:06:42 +03:00
Efraim Flashner 1898900f1f
gnu: avidemux: Use 'modify-phases'. 
* gnu/packages/video.scm (avidemux)[arguments]: Use 'modify-phases'.
 2016-06-16 18:06:42 +03:00
Efraim Flashner 4cafe8adfe
gnu: avidemux: Add hardware acceleration support. 
* gnu/packages/video.scm (avidemux)[inputs]: Add libva, libvdpau.
 2016-06-16 18:06:42 +03:00
Efraim Flashner f663e09720
gnu: libressl: Update to 2.3.6. 
* gnu/packages/tls.scm (libressl): Update to 2.3.6.
 2016-06-16 18:06:42 +03:00
Efraim Flashner 77952b4c18
gnu: openntpd: Update to 6.0p1. 
* gnu/packages/ntp.scm (openntpd): Update to 6.0p1.
 2016-06-16 18:06:42 +03:00
Efraim Flashner b13b9834f2
gnu: scribus: Build with modular qt. 
* gnu/packages/scribus.scm (scribus)[inputs]: Remove qt, add qtbase,
qtdeclarative, qttools.
 2016-06-16 18:06:42 +03:00
Efraim Flashner df9031e168
gnu: alsa-modular-synth: Build with modular qt. 
* gnu/packages/audio.scm (alsa-modular-synth)[inputs]: Remove qt,
add qtbase, qttools.
 2016-06-16 18:06:42 +03:00
Efraim Flashner ca1cab8243
gnu: drumstick: Build with modular qt. 
* gnu/packages/music.scm (drumstick)[inputs]: Remove qt, add qtbase, qtsvg.
 2016-06-16 18:06:42 +03:00
Efraim Flashner 07831f7a36
gnu: vmpk: Build with modular qt. 
* gnu/packages/music.scm (vmpk)[inputs]: Remove qt, add qtbase, qtsvg,
qttools, qtx11extras.
 2016-06-16 18:06:42 +03:00
Efraim Flashner e5f2afdbb5
gnu: synthv1: Build with modular qt. 
* gnu/packages/music.scm (synthv1)[inputs]: Remove qt, add qtbase, qttools.
 2016-06-16 18:06:42 +03:00
Efraim Flashner 0a0bfd685e
gnu: powertabeditor: Build with qtbase. 
* gnu/packages/music.scm (powertabeditor)[inputs]: Remove qt, add qtbase.
 2016-06-16 18:06:42 +03:00
Efraim Flashner e2814984af
gnu: gpsbabel: Build with modular qt. 
* gnu/packages/gps.scm (gpsbabel)[inputs]: Remove qt, add qtbase, qttools.
 2016-06-16 18:06:42 +03:00
Efraim Flashner 14ea30e473
gnu: bitcoin-core: Update to 0.12.1. 
* gnu/packages/finance.scm (bitcoin-core): Update to 0.12.1.
 2016-06-16 18:06:42 +03:00
Efraim Flashner 9a5c0320f0
gnu: v4l-utils: Update to 1.10.1. 
* gnu/packages/video.scm (v4l-utils): Update to 1.10.1.
 2016-06-16 18:06:42 +03:00
Efraim Flashner b37662e25c
gnu: v4l-utils: Build with qtbase. 
* gnu/packages/video.scm (v4l-utils)[inputs]: Remove qt, add qtbase.
 2016-06-16 18:06:42 +03:00
Efraim Flashner 90a2309b74
gnu: obs: Build with modular qt. 
* gnu/packages/video.scm (obs)[inputs]: Remove qt, add qtbase, qtx11extras.
 2016-06-16 18:06:42 +03:00
宋文武 78d2fd3230
gnu: mariadb: Update to 10.1.14. 
* gnu/packages/databases.scm (mariadb): Update to 10.1.14.
 2016-06-16 21:26:50 +08:00
Ludovic Courtès a7db719f3d
packages: Disambiguate 'modules' and 'imported-modules' in <origin>. 
The two mistakes made here (confusion between 'modules' and
'imported-modules') were canceling each other.

* guix/packages.scm (patch-and-repack): Use IMPORTED-MODULES, not
MODULES, as the base of the module list passed as #:modules to
'gexp->derivation'.
(origin->derivation): Pass IMPORTED-MODULES, not MODULES, as
the #:imported-modules argument of 'patch-and-repack'.
* gnu/packages/engineering.scm (fastcap)[source]: Add 'imported-modules'
field.
 2016-06-16 14:31:52 +02:00
Carlo Zancanaro 3d1240aa25
gnu: Add awesome. 
* gnu/packages/wm.scm (awesome): New variable.
* gnu/packages/patches/awesome-reproducible-png.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-16 14:29:43 +02:00
ng0 68a973024f
gnu: perl-test-simple: Update to 1.302026. 
* gnu/packages/perl.scm (perl-test-simple): Update to 1.302026.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-16 13:35:38 +02:00
Ludovic Courtès 20ccaecf70
gnu: Avoid #:prefix when importing (gnu packages …). 
* gnu/packages/lsh.scm: Remove #:prefix for (gnu packages compression).
Add #:prefix for (guix licenses).
 2016-06-16 13:08:57 +02:00
Andreas Enge 9e786e8ba8 gnu: avidemux: Update to 2.6.12. 
* gnu/packages/video.scm (avidemux): Update to 2.6.12.
[arguments]: Adapt version number of bundled ffmpeg.
 2016-06-15 22:01:35 +02:00
Efraim Flashner e238026916
gnu: offlineimap: Update to 6.7.0.1. 
* gnu/packages/mail.scm (offlineimap): Update to 6.7.0.1.
 2016-06-15 20:23:58 +03:00
Efraim Flashner e1963db750
gnu: oxygen-icons: Build with qtbase. 
* gnu/packages/kde-frameworks.scm (oxygen-icons)[inputs]: Remove qt,
add qtbase.
 2016-06-15 20:23:58 +03:00
Leo Famulari 03c1662e38
gnu: Add gnome-maps. 
* gnu/packages/geo.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2016-06-15 13:18:32 -04:00
Leo Famulari 01ea778f68
gnu: Add gfbgraph. 
* gnu/packages/gnome.scm (gfbgraph): New variable.
 2016-06-15 13:18:31 -04:00
Leo Famulari f7c6833f1c
gnu: libchamplain: Build Vala bindings. 
* gnu/packages/gnome.scm (libchamplain)[native-inputs]: Add
gobject-introspection, vala.
[arguments]: New field.
 2016-06-15 13:18:31 -04:00
Leo Famulari 0a387b14f1
gnu: vala: Build Vala API (.vapi) generator. 
* gnu/packages/gnome.scm (vala)[arguments]: Pass --enable-apigen
to #:configure-flags.
 2016-06-15 13:18:31 -04:00
Leo Famulari 6064a4e84a
gnu: Add folks. 
* gnu/packages/gnome.scm (folks): New variable.
 2016-06-15 13:18:31 -04:00
Leo Famulari a73c1cf84a
gnu: evolution-data-server: Build Vala bindings. 
* gnu/packages/gnome.scm (evolution-data-server)[arguments]: Add
--enable-vala-bindings to #:configure-flags.
[native-inputs]: Add vala.
 2016-06-15 13:18:30 -04:00
Leo Famulari c73d4c5922
gnu: telepathy-glib: Enable vala bindings. 
* gnu/packages/glib.scm (telepathy-glib)[arguments]: Add --enable-vala-bindings
to #:configure-flags.
[native-inputs]: Add vala.
 2016-06-15 13:18:30 -04:00
ng0 0202612d14
gnu: Add emacs-ebuild-mode. 
* gnu/packages/emacs.scm (emacs-ebuild-mode): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-06-15 19:10:35 +03:00
ng0 26e08b4d33
gnu: Add emacs-lua-mode. 
* gnu/packages/emacs.scm (emacs-lua-mode): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-06-15 19:10:35 +03:00
Ricardo Wurmus 4714d521e3
gnu: Add r-bsgenome-mmusculus-ucsc-mm10. 
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm10): New
  variable.
 2016-06-15 17:08:08 +02:00
Leo Famulari 9c4a8514d6
gnu: openssl: Fix CVE-2016-2177 and CVE-2016-2178. 
* gnu/packages/patches/openssl-CVE-2016-2177.patch,
gnu/packages/patches/openssl-CVE-2016-2178.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/tls.scm (openssl/fixed): Use them.
 2016-06-15 10:48:13 -04:00
Danny Milosavljevic a44fd439dc
gnu: Add python-wcwidth and python2-wcwidth. 
* gnu/packages/python.scm (python-wcwidth, python2-wcwidth): New variables.

Co-authored-by: Leo Famulari <leo@famulari.name>
 2016-06-15 10:44:52 -04:00
Ricardo Wurmus ce9cf64b78
gnu: Add log4cpp. 
* gnu/packages/logging.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2016-06-15 15:35:02 +02:00
Ricardo Wurmus ba6a996eac
gnu: Add gengetopt. 
* gnu/packages/popt.scm (gengetopt): New variable.
 2016-06-15 15:34:58 +02:00
Hartmut Goebel d3a858cb32
gnu: Add teensy-loader-cli. 
* gnu/packages/flashing-tools.scm (teensy-loader-cli): New variable.
* gnu/packages/patches/teensy-loader-cli-help.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-15 15:27:48 +02:00
Ludovic Courtès 0fb9a15bb5
gnu: grue-hunter: Move to (gnu packages games). 
* gnu/packages/grue-hunter.scm: Remove.  Move contents to...
* gnu/packages/games.scm (grue-hunter): ... here.  New variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
 2016-06-15 15:26:30 +02:00
Manolis Ragkousis 8956d07a03
gnu: cross-gcc: Allow Hurd libraries to be found. 
* gnu/packages/cross-base.scm (cross-gcc-arguments)[arguments]: Add 'KERNEL/lib'
  to 'CROSS_LIBRARY_PATH'.
 2016-06-15 14:35:23 +03:00
Efraim Flashner 6dc554fa2a
gnu: pumpa: Build with qtbase. 
* gnu/packages/pumpio.scm (pumpa)[inputs]: Remove qt, add qtbase.
 2016-06-15 11:39:53 +03:00
Efraim Flashner e2788cef13
gnu: pinentry-qt: Build with qtbase. 
* gnu/packages/gnupg.scm (pinentry-qt)[inputs]: Remove qt, add qtbase.
 2016-06-15 11:26:10 +03:00
Efraim Flashner d438c9683b
gnu: Add qttools. 
* gnu/packages/qt.scm (qttools): New variable.
 2016-06-15 11:11:56 +03:00
Efraim Flashner d5ca54ce47
gnu: Add qtlocation. 
* gnu/packages/qt.scm (qtlocation): New variable.
 2016-06-15 11:11:56 +03:00
Efraim Flashner f5377013d6
gnu: Add qtwebchannel. 
* gnu/packages/qt.scm (qtwebchannel): New variable.
 2016-06-15 11:11:56 +03:00
Efraim Flashner 00806f2bb9
gnu: Add qtserialport. 
* gnu/packages/qt.scm (qtserialport): New variable.
 2016-06-15 11:11:56 +03:00
Efraim Flashner bc8ede0150
gnu: Add qtwayland. 
* gnu/packages/qt.scm (qtwayland): New variable.
 2016-06-15 11:11:56 +03:00
Efraim Flashner 15378f93b9
gnu: Add qtmultimedia. 
* gnu/packages/qt.scm (qtmultimedia): New variable.
 2016-06-15 11:11:56 +03:00
Efraim Flashner 3474767cbd
gnu: Add qtsensors. 
* gnu/packages/qt.scm (qtsensors): New variable.
 2016-06-15 11:11:56 +03:00
Efraim Flashner cac893ec09
gnu: Add qtwebsockets. 
* gnu/packages/qt.scm (qtwebsockets): New variable.
 2016-06-15 11:11:56 +03:00
Efraim Flashner e98cb96d69
gnu: Add qtconnectivity. 
* gnu/packages/qt.scm (qtconnectivity): New variable.
 2016-06-15 11:11:56 +03:00
Efraim Flashner e3a2ed8151
gnu: Add qtdeclarative. 
* gnu/packages/qt.scm (qtdeclarative): New variable.
 2016-06-15 11:11:56 +03:00
Efraim Flashner 98eec71280
gnu: Add qtxmlpatterns. 
* gnu/packages/qt.scm (qtxmlpatterns): New variable.
 2016-06-15 11:11:56 +03:00
Efraim Flashner f6c13613af
gnu: Add qtx11extras. 
* gnu/packages/qt.scm (qtx11extras): New variable.
 2016-06-15 11:11:56 +03:00
Efraim Flashner 9b69421021
gnu: Add qtimageformats. 
* gnu/packages/qt.scm (qtimageformats): New variable.
 2016-06-15 11:11:56 +03:00
Efraim Flashner 19c1763113
gnu: Add qtsvg. 
* gnu/packages/qt.scm (qtsvg): New variable.
 2016-06-15 11:11:56 +03:00
Ludovic Courtès 65efa9ba9c
gnu: mit-krb5: Update to 1.14.2. 
* gnu/packages/mit-krb5.scm (mit-krb5): Update to 1.14.2.
[source]: Remove 'patches'.
* gnu/packages/patches/mit-krb5-CVE-2015-8629.patch,
gnu/packages/patches/mit-krb5-CVE-2015-8630.patch,
gnu/packages/patches/mit-krb5-CVE-2015-8631.patch,
gnu/packages/patches/mit-krb5-init-context-null-spnego.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2016-06-14 21:29:02 +02:00
Ludovic Courtès a083b5cb21
gnu: mit-krb5: Disable parallel build and testing. 
* gnu/packages/mit-krb5.scm (mit-krb5)[arguments]: Pass
  #:parallel-build? #f and #:parallel-tests? #f.
 2016-06-14 21:29:02 +02:00
Ricardo Wurmus 4f54a63e1e
gnu: julia: Use unbundled release tarball. 
* gnu/packages/julia.scm (julia)[source]: Use smaller tarball without
bundled sources.
[inputs]: Add inputs for rmath-julia, suitesparse, objconv, dsfmt, and
virtualenv.
[arguments]: Add phase "prepare-deps" to copy tarballs to their expected
locations.
 2016-06-14 16:27:19 +02:00
David Thompson f828ff5b14
gnu: boost: Allow for customizable build flags. 
* gnu/packages/boost.scm (boost)[arguments]: Extract build flags to #:make-flags argument.
 2016-06-14 08:50:31 -04:00
Efraim Flashner 6138dedec9
gnu: perl-dbi: Update to 1.636. 
* gnu/packages/databases.scm (perl-dbi): Update to 1.636.
[home-page]: Update it.
 2016-06-14 15:06:48 +03:00
Efraim Flashner 0e8186eb12
gnu: perl-exporter-lite: Update to 0.08. 
* gnu/packages/perl.scm (perl-exporter-lite): Update to 0.08.
[home-page]: Update it.
 2016-06-14 15:04:09 +03:00
Efraim Flashner 67abcc05ba
gnu: perl-image-exiftool: Update to 10.20. 
* gnu/packages/photo.scm (perl-image-exiftool): Update to 10.20.
[home-page]: Update it.
 2016-06-14 15:01:35 +03:00
Efraim Flashner cf4a71322b
gnu: perl-test-deep: Update to 1.120. 
* gnu/packages/perl.scm (perl-test-deep): Update to 1.120.
[home-page]: Update it.
 2016-06-14 14:31:58 +03:00
Efraim Flashner 54c3c140ce
gnu: perl-xml-libxml: Update to 2.0125. 
* gnu/packages/xml.scm (perl-xml-libxml): Update to 2.0125.
 2016-06-14 14:29:03 +03:00
Efraim Flashner e831256ff5
gnu: perl-xml-simple: Update to 2.22. 
* gnu/packages/xml.scm (perl-xml-simple): Update to 2.22.
[propagated-inputs]: Add perl-xml-sax.
[home-page]: Update it.
 2016-06-14 14:08:07 +03:00
Ludovic Courtès 28206a8ebf
gnu: automake: Adjust test to ignore new gzip warnings. 
* gnu/packages/patches/automake-test-gzip-warning.patch: New file.
* gnu/packages/autotools.scm (automake)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-06-14 09:41:38 +02:00
Efraim Flashner d0d2b0f9cd
gnu: parallel: Update to 20160522. 
* gnu/packages/parallel.scm (parallel): Update to 20160522.
 2016-06-14 10:08:14 +03:00
Alex Vong feb5c55403
gnu: youtube-dl: Update to 2016.06.14. 
* gnu/packages/video.scm (youtube-dl): Update to 2016.06.14.
[source]: Use https.
[home-page]: Use https.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-06-14 09:07:02 +03:00
David Thompson 32ac717c5f gnu: Add gnome-shell-extensions. 
* gnu/packages/gnome.scm (gnome-shell-extensions): New variable.
 2016-06-13 19:22:54 -04:00
Ben Woodcroft e4a44a6aa5
gnu: Add ruby-bio-kseq. 
* gnu/packages/bioinformatics.scm (ruby-bio-kseq): New variable.
 2016-06-14 07:57:09 +10:00
Ludovic Courtès d3ef652aa1
gnu: wget: Update to 1.18. 
* gnu/packages/wget.scm (wget): Update to 1.18.
 2016-06-13 23:13:16 +02:00
Efraim Flashner 65089213c8
gnu: wayland: Update to 1.11.0. 
* gnu/packages/freedesktop.scm (wayland): Update to 1.11.0.
 2016-06-13 22:37:35 +03:00
Efraim Flashner c6bccf713b
gnu: python-pykafka: Change uri. 
* gnu/packages/python.scm (python-pykafka)[source]: Update pypi uri.
 2016-06-13 21:31:13 +03:00
Nicolas Goaziou 2fb3dddabf
gnu: giac-xcas: Update to 1.2.2-59 
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.2-59.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-13 18:05:54 +02:00
Nicolas Goaziou 2e2c6e9655
gnu: asymptote: Update to 2.38 
* gnu/packages/plotutils.scm (asymptote): Update to 2.38.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-13 18:05:54 +02:00
Ricardo Wurmus 9f8ee3fe0e
gnu: Add python-tables. 
* gnu/packages/python.scm (python-tables, python2-tables): New
  variables.
 2016-06-13 18:01:02 +02:00
Ricardo Wurmus 883302daf2
gnu: piranha: Update to 1.2.1. 
* gnu/packages/bioinformatics.scm (piranha): Update to 1.2.1.
 2016-06-13 11:53:38 +02:00
Ludovic Courtès 809f17628f
gnu: swig: Adjust to pcre output split. 
This fixes a regression introduced in
commit 6d49ca3bad.

* gnu/packages/swig.scm (swig)[native-inputs]: Add pcre:bin.
[inputs]: Remove pcre.
 2016-06-13 09:42:55 +02:00
Leo Famulari 28b33172c9
gnu: libxslt: Update to 1.1.29. 
* gnu/packages/patches/libxslt-CVE-2015-7995.patch,
gnu/packages/patches/libxslt-remove-date-timestamps.patch: Delete files.
* gnu/packages/xml.scm: Update to 1.1.29.
[source]: Remove patches.
 2016-06-12 22:09:39 -04:00
Leo Famulari ee86e7e148
Merge branch 'master' into core-updates 2016-06-12 22:09:26 -04:00
Orivej Desh 31d968fbcf
gnu: unison: Install unison-fsmonitor. 
* gnu/packages/ocaml.scm (unison)[arguments]: Add 'install-fsmonitor'
phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-12 23:55:16 +02:00
Roel Janssen d95e8e0170
gnu: Add emacs-rainbow-identifiers. 
* gnu/packages/emacs.scm (emacs-rainbow-identifiers): New variable.
 2016-06-12 23:37:12 +02:00
Leo Famulari 6e46836c76
gnu: imagemagick: Update to 6.9.4-9. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4-9.
 2016-06-12 16:04:22 -04:00
Alex Kost 11b8e66a4c
gnu: manaplus: Update to 1.6.6.4. 
* gnu/packages/games.scm (manaplus): Update to 1.6.6.4.
 2016-06-12 17:43:48 +03:00
David Thompson 6fd8f8d6fc gnu: Add arc-icon-theme. 
* gnu/packages/gnome.scm (arc-icon-theme): New variable.
 2016-06-11 21:21:16 -04:00
David Thompson 9987c57c74 gnu: Add moka-icon-theme. 
* gnu/packages/gnome.scm (moka-icon-theme): New variable.
 2016-06-11 21:21:16 -04:00
David Thompson 813f814a29 gnu: Add arc-theme. 
* gnu/packages/gnome.scm (arc-theme): New variable.
 2016-06-11 21:21:16 -04:00
Leo Famulari 1d4f0994f2
gnu: wireshark: Update to 2.0.4 [security fixes]. 
Fixes CVE-2016-{5350, 5351, 5352, 5353, 5354, 5355, 5356, 5357, 5358, 5359}.

* gnu/packages/networking.scm (wireshark): Update to 2.0.4.
 2016-06-11 20:02:07 -04:00
ng0 bb88a9a976
gnu: libmicrohttpd: Update to 0.9.50. 
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.50.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-06-11 19:35:12 -04:00
Leo Famulari b414c115d8
gnu: signify: Update to 18. 
* gnu/packages/crypto.scm (signify): Update to 18.
 2016-06-11 18:54:37 -04:00
Taylan Ulrich Bayırlı/Kammer 6b741f6898 gnu: higan: Update to v099. 
This release removes the "balanced" emulation core (aka profile).
 2016-06-12 01:31:16 +03:00
Ricardo Wurmus 945939a5b4
gnu: gnucash: Add support for AqBanking. 
* gnu/packages/gnucash.scm (gnucash)[inputs]: Add aqbanking.
[arguments]: Add configure flag to enable aqbanking.
 2016-06-11 16:52:51 +02:00
Ricardo Wurmus 445aa13753
gnu: Add AqBanking. 
* gnu/packages/gnucash.scm (aqbanking): New variable.
 2016-06-11 16:52:51 +02:00
Ricardo Wurmus 5c881f3211
gnu: Add gwenhywfar. 
* gnu/packages/gnucash.scm (gwenhywfar): New variable.
 2016-06-11 16:07:08 +02:00
Ricardo Wurmus e4aab73487
gnu: xmlsec: Enable gnutls support. 
* gnu/packages/xml.scm (xmlsec)[native-inputs]: Add pkg-config.
 2016-06-11 16:07:08 +02:00
Ricardo Wurmus c71c8b97a2
gnu: gnucash: Add "license:" prefix. 
* gnu/packages/gnucash.scm: Import licenses with "license:" prefix.
(gnucash)[license]: Add prefix.
 2016-06-11 16:07:08 +02:00
宋文武 45dda35eed
gnu: Add python-pykafka and python2-pykafka. 
* gnu/packages/python.scm (python-pykafka, python2-pykafka): New variables.
 2016-06-11 12:53:09 +08:00
宋文武 1c4c8a33d7
gnu: Add python-kazoo and python2-kazoo. 
* gnu/packages/python.scm (python-kazoo, python2-kazoo): New variables.
 2016-06-11 12:53:09 +08:00
宋文武 d951bd547c
gnu: Add python-tabulate and python2-tabulate. 
* gnu/packages/python.scm (python-tabulate, python2-tabulate): New variables.
 2016-06-11 12:53:09 +08:00
宋文武 2c1286f48b
gnu: Add librdkafka. 
* gnu/packages/networking.scm (librdkafka): New variable.
 2016-06-11 12:53:09 +08:00
Peter 59befb7f31
gnu: fish: Update to 2.3.0. 
* gnu/packages/fish.scm (fish): Update to 2.3.0.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-06-11 12:53:09 +08:00
Leo Famulari 45de649a56
gnu: git: Update to 2.8.4. 
* gnu/packages/version-control.scm (git): Update to 2.8.4.
(git-manpages)[source]: Update hash.
 2016-06-10 23:16:53 -04:00
Leo Famulari 436dd04636
gnu: expat: Fix CVE-2012-6702 and CVE-2016-5300. 
* gnu/packages/patches/expat-CVE-2012-6702-and-CVE-2016-5300.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (expat/fixed): Use it.
 2016-06-10 20:33:45 -04:00
Mark H Weaver 8af5cac527
Revert "gnu: openssl: Remove workaround for GCC 4.9.3 (no longer used)." 
This reverts commit 12b6f6527e.
 2016-06-10 16:52:50 -04:00
Mark H Weaver a50afcf931
gnu: linux-libre: Update to 4.6.2. 
* gnu/packages/linux.scm (linux-libre): Update to 4.6.2.
 2016-06-10 16:33:30 -04:00
Mark H Weaver c785fe13e1
gnu: linux-libre-4.4: Update to 4.4.13. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.13.
 2016-06-10 16:32:41 -04:00
Mark H Weaver 08ffddead3
gnu: linux-libre-4.1: Update to 4.1.26. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.26.
 2016-06-10 16:31:50 -04:00
Taylan Ulrich Bayırlı/Kammer 7c6058c082 gnu: higan: Various improvements. 
* gnu/packages/games.scm (higan): Use semi-official repository at GitLab
(using hotfix tag 098b which is equivalent to official release 098).
Add a patch to remove the build flag -march=native.  Set profile to
balanced.
* gnu/packages/patches/higan-remove-march-native-flag.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-06-10 17:40:27 +03:00
Ludovic Courtès c59f62e9cb
gnu: dstat: Adjust license. 
* gnu/packages/admin.scm (dstat)[license]: Change to GPL2+.
 2016-06-10 15:23:01 +02:00
Peter 1a0346f060
gnu: Add dstat. 
* gnu/packages/admin.scm (dstat): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-10 15:21:26 +02:00
Clément Lassieur 0ee23de941
gnu: Add woof. 
* gnu/packages/web.scm (woof): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-10 15:21:26 +02:00
Patrick Hetu 9e8599a3b1
gnu: g-wrap: Install modules to 'site/2.0'. 
* gnu/packages/guile.scm (g-wrap)[arguments]: New field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-10 15:21:26 +02:00
Roel Janssen b92d02d978
gnu: Add sparql-query. 
* gnu/packages/databases.scm (sparql-query): New variable.
 2016-06-10 14:45:41 +02:00
Efraim Flashner aece7602d9
gnu: qtbase: Update to 5.6.1. 
* gnu/packages/qt.scm (qtbase): Update to 5.6.1.
 2016-06-10 15:00:56 +03:00
Ludovic Courtès 05aa576b37
gnu: procmail: Remove unneeded glibc input. 
* gnu/packages/mail.scm (procmail)[inputs]: Remove GLIBC.
 2016-06-10 13:57:14 +02:00
Ludovic Courtès bbe032940c
gnu: tar: Allow cross-compilation. 
* gnu/packages/base.scm (tar)[inputs]: New field.
 2016-06-10 11:25:09 +02:00
ng0 2eca2d6267
gnu: st: Update to 0.6 
* gnu/packages/suckless.scm (st): Update to 0.6.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-06-09 21:57:43 +03:00
ng0 4aecc79bd7
gnu: weechat: Update to 1.5. 
* gnu/packages/irc.scm (weechat): Update to 1.5.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-06-09 21:53:10 +03:00
Lukas Gradl 5f6aba6b62
gnu: Add googletest. 
* gnu/packages/check.scm (googletest): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-06-09 21:38:51 +03:00
Efraim Flashner 99865f6e86
gnu: gettext: Update to 0.19.8. 
* gnu/packages/gettext.scm (gettext): Update to 0.19.8.
 2016-06-09 20:46:07 +03:00
Efraim Flashner 1f3cf0fdad
gnu: owncloud-client: Update to 2.2.1. 
* gnu/packages/owncloud.scm (owncloud-client): Update to 2.2.1.
 2016-06-09 09:48:58 +03:00
宋文武 4e5300492b
gnu: xboard: Update to 4.9.0, use GTK+ front-end. 
* gnu/packages/games.scm (xboard): Update to 4.9.0.
[inputs]: Add gtk+-2.
 2016-06-09 14:32:18 +08:00
Mark H Weaver 993b400acb
Revert "gnu: libxml2: Add fix for CVE-2016-1762." 
This reverts commit 6e4f18cfdd.
 2016-06-08 18:17:13 -04:00
Mark H Weaver 6e4f18cfdd
gnu: libxml2: Add fix for CVE-2016-1762. 
* gnu/packages/patches/libxml2-CVE-2016-1762.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (libxml2/fixed)[source]: Add patch.
 2016-06-08 14:26:54 -04:00
Mark H Weaver 98d9182205
gnu: icecat: Add fixes for CVE-2016-{2818,2819,2821,2824,2828,2831}. 
* gnu/packages/patches/icecat-CVE-2016-2818-pt1.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt2.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt3.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt4.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt5.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt6.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt7.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt8.patch,
gnu/packages/patches/icecat-CVE-2016-2818-pt9.patch,
gnu/packages/patches/icecat-CVE-2016-2819.patch,
gnu/packages/patches/icecat-CVE-2016-2821.patch,
gnu/packages/patches/icecat-CVE-2016-2824.patch,
gnu/packages/patches/icecat-CVE-2016-2828.patch,
gnu/packages/patches/icecat-CVE-2016-2831.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
 2016-06-08 14:26:54 -04:00
Mark H Weaver c7c49446eb
gnu: libvpx: Add fix for CVE-2016-2818. 
* gnu/packages/patches/libvpx-CVE-2016-2818.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/video.scm (libvpx)[source]: Add patch.
 2016-06-08 14:26:54 -04:00
Efraim Flashner a134cc8e93
gnu: vlc: Update to 2.2.4 [fixes CVE-2016-5108]. 
* gnu/packages/video.scm (vlc): Update to 2.2.4.
[inputs]: Remove qt, add qtbase.
[arguments]: Add phase to disable display test.
 2016-06-08 17:11:42 +03:00
Ben Woodcroft dae620b8fe
gnu: Add ruby-concurrent. 
* gnu/packages/ruby.scm (ruby-concurrent): New variable.
* gnu/packages/patches/ruby-concurrent-ignore-broken-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-06-08 21:36:02 +10:00
Ben Woodcroft 3cc7809745
gnu: Add ruby-timecop. 
* gnu/packages/ruby.scm (ruby-timecop): New variable.
 2016-06-08 21:28:20 +10:00
Ben Woodcroft 606ee9a113
gnu: ruby-activesupport: Add 'ruby-tzinfo-data' propagated input. 
* gnu/packages/ruby.scm (ruby-activesupport)[propagated-inputs]: Add
'ruby-tzinfo-data'.
 2016-06-08 21:28:20 +10:00
Ben Woodcroft 1e12924ae5
gnu: Add ruby-tzinfo-data. 
* gnu/packages/ruby.scm (ruby-tzinfo-data): New variable.
* gnu/packages/patches/ruby-tzinfo-data-ignore-broken-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-06-08 21:28:20 +10:00
Leo Famulari b402cb7741
gnu: libressl: Update to 2.3.5. 
* gnu/packages/tls.scm (libressl): Update to 2.3.5.
 2016-06-08 00:08:01 -04:00
Taylan Ulrich Bayırlı/Kammer bcd2982fdf gnu: Add higan. 
* gnu/packages/games.scm (higan): New variable.
 2016-06-08 04:46:04 +03:00
Efraim Flashner 36f0c9f2df
gnu: make: Update to 4.2. 
* gnu/packages/base.scm (make): Update to 4.2.
 2016-06-07 23:13:29 +03:00
Manolis Ragkousis e1ecd50e21
gnu: hurd: Move configure flags from "hurd-minimal" to "hurd-headers". 
* gnu/packages/hurd.scm (hurd-minimal)[arguments]: Move configure-flags from here..
  (hurd-headers)[arguments]: ..to here.
 2016-06-07 22:28:24 +03:00
Manolis Ragkousis 90b5d00bcb
gnu: hurd: Remove inputs no longer needed. 
* gnu/packages/hurd.scm (hurd-headers, hurd-minimal)[native-inputs]: Remove "autoconf".
 2016-06-07 22:10:03 +03:00
Manolis Ragkousis 6648cf6325
gnu: hurd-headers: Use "--host=i586-pc-gnu" only when not cross-building. 
* gnu/packages/hurd.scm (hurd-headers)[arguments]: Use "--host=i586-pc-gnu"
  only when not cross-building.
 2016-06-07 21:32:10 +03:00
Danny Milosavljevic d0b6fed6b8
gnu: Add python-ply. 
* gnu/packages/python.scm (python-ply, python2-ply): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-06-07 13:27:50 -04:00
Manolis Ragkousis 26a28c8ae8
gnu: gnumach-headers: Use "--build=i586-pc-gnu" only when not cross-building. 
* gnu/packages/hurd.scm (gnumach-headers)[arguments]: Use "--build=i586-pc-gnu"
  only when not cross-building.
 2016-06-07 19:20:54 +03:00
Manolis Ragkousis b09617da04
gnu: base: Add glibc-for-target macro. 
* gnu/packages/base.scm (glibc): Add macro.
  (glibc/linux): Rename glibc to glibc/linux.
  (glibc/hurd): Adjust accordingly.
 2016-06-07 19:14:13 +03:00
8p8c 73c8d39c4b
gnu: Add font-hack. 
* gnu/packages/fonts.scm (font-hack): New variable.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-06-07 22:32:10 +08:00
Ricardo Wurmus 2d15f60126
gnu: java-swt: Use 64-bit archive on x86_64. 
* gnu/packages/java.scm (java-swt)[source]: Use separate source archive
for x86_64.
 2016-06-07 12:35:51 +02:00
Ludovic Courtès 3c9e0ddc6f
gnu: libxml2: Upgrade to 2.9.4. 
* gnu/packages/xml.scm (libxml2)[replacement]: Remove.
[version, source]: Upgrade to 2.9.4.
(libxml2/fixed): Remove.
 2016-06-07 12:01:33 +02:00
Ludovic Courtès aeafff536f
Merge branch 'master' into core-updates 2016-06-07 11:54:03 +02:00
Ludovic Courtès 9dee9e8ffe
Revert "gnu: Default to GCC 5." 
This reverts commit e3d0fcbf7e.
This is a temporary measure until GCC 5 builds on ARM, see:

  https://gcc.gnu.org/bugzilla/show_bug.cgi?id=71399
 2016-06-07 10:52:04 +02:00
Ludovic Courtès febf7ef675
gnu: Add ghc-wl-pprint. 
* gnu/packages/haskell.scm (ghc-wl-pprint): New variable.
 2016-06-06 18:14:52 +02:00
Ludovic Courtès abbf26238d
gnu: Add ghc-union-find. 
* gnu/packages/haskell.scm (ghc-union-find): New variable.
 2016-06-06 18:14:52 +02:00
Ludovic Courtès b6bfa2cacf
gnu: Add ghc-indents. 
* gnu/packages/haskell.scm (ghc-indents): New variable.
 2016-06-06 18:14:52 +02:00
Ludovic Courtès 839415ecbc
gnu: Add ghc-concatenative. 
* gnu/packages/haskell.scm (ghc-concatenative): New variable.
 2016-06-06 18:14:52 +02:00
Ludovic Courtès 2aa0bada76
gnu: Add ghc-aeson-pretty. 
* gnu/packages/haskell.scm (ghc-aeson-pretty): New variable.
 2016-06-06 18:14:52 +02:00
Manolis Ragkousis aa81eb73ce
gnu: glibc-hurd-headers: Use correct "--host". 
* gnu/packages/base.scm (glibc/hurd-headers)[arguments]: Use "i586-pc-gnu"
  instead of "i686-pc-gnu".
 2016-06-06 14:47:46 +03:00
Manolis Ragkousis 5d4d7a9aa9
gnu: glibc-hurd: Update to 20160518. 
* gnu/packages/base.scm (glibc/hurd)[version]: Update to version 20160518.
  [propagated-inputs]: Use hurd-core-headers.
  [native-inputs]: Remove libpthread's source and "patch/libpthread-patch".
  [arguments]: Add augment-libc.so and pre-configure-set-pwd phases.
  Remove prepare-libpthread phase.  Stop removing "--with-headers="
  from original-configure-flags.
* gnu/packages/patches/glibc-hurd-extern-inline.patch: Remove patch.
* gnu/packages/patches/libpthread-glibc-preparation.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-06-06 14:42:45 +03:00
Efraim Flashner 6e8dee98e5
gnu: qtkeychain: Update to 0.7.0. 
* gnu/packages/qt.scm (qtkeychain): Update to 0.7.0.
 2016-06-06 13:01:26 +03:00
Efraim Flashner 9acd40fee8
gnu: calibre: Update to 2.58.0. 
* gnu/packages/ebook.scm (calibre): Update to 2.58.0.
 2016-06-06 10:21:46 +03:00
Efraim Flashner eef988c82e
gnu: python-pyqt: Use 'modify-phases'. 
* gnu/packages/qt.scm (python-pyqt)[arguments]: Use 'modify-phases'.
 2016-06-06 10:21:46 +03:00
Efraim Flashner 2be0681367
gnu: python-pyqt: Update to 5.6. 
* gnu/packages/qt.scm (python-pyqt, python2-pyqt): Update to 5.6.
(python-pyqt)[native-inputs]: Remove qt, add qtbase.
(python2-pyqt)[native-inputs]: Remove qt, add qtbase.
 2016-06-06 10:21:45 +03:00
Efraim Flashner 39766868a5
gnu: python-sip: Use 'modify-phases'. 
* gnu/packages/qt.scm (python-sip)[arguments]: Use 'modify-phases'.
 2016-06-06 10:21:44 +03:00
Efraim Flashner 8fa7f8d907
gnu: python-sip: Update to 4.18. 
* gnu/packages/qt.scm (python-sip, python2-sip): Update to 4.18.
 2016-06-06 10:21:43 +03:00
humanitiesNerd f9be43660f
gnu: Add emacs-cider. 
* gnu/packages/emacs.scm (emacs-cider): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-06-05 12:03:43 +03:00
宋文武 555d02e739
gnu: znc: Update to 1.6.3. 
* gnu/packages/messaging.scm (znc): Update to 1.6.3.
 2016-06-05 16:55:48 +08:00
Leo Famulari 64a42a08cd
gnu: ntp: Update to 4.2.8p8 [fixes CVE-2016-{4953, 4954, 4955, 4956, 4957}]. 
* gnu/packages/ntp.scm (ntp): Update to 4.2.8p8.
 2016-06-05 00:16:56 -04:00
Leo Famulari 620ce2ef23
gnu: ntp: Add HTTPS URL. 
This works around an HTTP -> HTTPS redirection.

* gnu/packages/ntp.scm (ntp)[source]: Add HTTPS URL.
 2016-06-05 00:16:56 -04:00
Ben Woodcroft 5d52ac7453
gnu: krona-tools: Correct paths used internally. 
* gnu/packages/web.scm (krona-tools)[arguments]: Add 'check' phase.
Correct paths used internally.
 2016-06-05 09:54:33 +10:00
Nicolas Goaziou 834a2fc1ff
gnu: Add Wireshark. 
* gnu/packages/networking.scm (wireshark): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-05 00:05:38 +02:00
Hartmut Goebel 698bd29799
gnu: Use full SHA1 commit ids. 
* gnu/packages/bioinformatics.scm (pbtranscript-tofu, mosaik,
  smithlab-cpp, piranha): Use full SHA1 commit ids.
* gnu/packages/ci.scm (hydra): Likewise.
* gnu/packages/compression.scm (sfarkxtc): Likewise.
* gnu/packages/emacs.scm (emacs-ob-ipython): Likewise.
* gnu/packages/games.scm (mars, emulation-station): Likewise.
* gnu/packages/gnunet.scm (guile-gnunet): Likewise.
* gnu/packages/music.scm (non-sequencer): Likewise.
* gnu/packages/version-control.scm (git-flow, git-test-sequence): Likewise.
* gnu/packages/xorg.scm (xf86-video-intel): Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-05 00:05:38 +02:00
Andreas Enge 7868000fe4
gnu: Add qtbase. 
* gnu/packages/qt.scm (qtbase): New variable.

Co-authored by: Efraim Flashner <efraim@flashner.co.il>
 2016-06-04 17:23:20 +02:00
Matthew Jordan ae60900199
gnu: Add emacs-helm. 
* gnu/packages/emacs.scm (emacs-helm): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-06-04 15:45:32 +03:00
Alex Kost a88825d965
gnu: lirc: Update to 0.9.4. 
* gnu/packages/lirc.scm (lirc): Update to 0.9.4.
[arguments]: Add 'patch-lirc-make-devinput' and 'patch-doc/Makefile.in'
phases.
[inputs]: Add 'libusb-compat' and 'linux-libre-headers'.
 2016-06-04 15:43:47 +03:00
宋文武 da3aeeb62b
gnu: Add python-twisted and python2-twisted. 
* gnu/packages/python.scm (python-twisted, python2-twisted): New variables.
 2016-06-04 16:05:07 +08:00
宋文武 d79a343b91
gnu: Add python-gevent and python2-gevent. 
* gnu/packages/python.scm (python-gevent, python2-gevent): New variables.
 2016-06-04 15:07:11 +08:00
宋文武 68b9d2422c
gnu: Add python-greenlet and python2-greenlet. 
* gnu/packages/python.scm (python-greenlet, python2-greenlet):
New variables.
 2016-06-04 15:07:03 +08:00
Leo Famulari 85de436530
gnu: smartmontools: Update to 6.5. 
* gnu/packages/admin.scm (smartmontools): Update to 6.5.
 2016-06-03 23:13:21 -04:00
Ben Woodcroft 6ac0a0fbe7
gnu: diamond: Update to 0.8.5. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.5.
 2016-06-04 09:28:54 +10:00
Matthew Jordan 3aeb6e1d1a
gnu: Add ruby-spring. 
* gnu/packages/rails.scm (ruby-spring): New variable.
 2016-06-04 09:16:07 +10:00
Matthew Jordan 90322fdbe3
gnu: Add ruby-debug-inspector. 
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/rails.scm: New file.
 2016-06-04 09:15:57 +10:00
Leo Famulari 1c5ee417f4
gnu: imagemagick: Update to 6.9.4-7. 
* gnu/packages/patches/imagemagick-CVE-2016-5118.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4-7.
[source]: Remove patch.
 2016-06-03 16:45:13 -04:00
Danny Milosavljevic b37b854e2d
gnu: wxwidgets: Enable support for "advanced" regular expressions. 
* gnu/packages/wxwidgets.scm (wxwidgets)[arguments]: Enable support for
"advanced" regular expressions.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-06-03 16:23:41 -04:00
Leo Famulari d0533afa3b
gnu: certbot, python-acme: Update to 0.8.0. 
These packages should be updated together.

* gnu/packages/tls.scm (certbot): Update to 0.8.0.
[arguments]: Remove substitution in 'docs' phase.
(python-acme, python-acme): Update to 0.8.0.
 2016-06-03 15:38:22 -04:00
David Thompson e08580c5c3
gnu: emacs-yaml-mode: Fix source hash. 
* gnu/packages/emacs.scm (emacs-yaml-mode)[source]: Fix hash.
 2016-06-03 11:42:17 -04:00
David Thompson 7529c883af
gnu: Add emacs-web-mode. 
* gnu/packages/emacs.scm (emacs-web-mode): New variable.
 2016-06-03 08:54:25 -04:00
David Thompson 63de1231e2
gnu: Add emacs-yaml-mode. 
* gnu/packages/emacs.scm (emacs-yaml-mode): New variable.
 2016-06-03 08:54:25 -04:00
David Thompson 529fe99204
gnu: Add emacs-ido-ubiquitous. 
* gnu/packages/emacs.scm (emacs-ido-ubiquitous): New variable.
 2016-06-03 08:54:25 -04:00
David Thompson 65b49ae702
gnu: Add emacs-ido-completing-read+. 
* gnu/packages/emacs.scm (emacs-ido-completing-read+): New variable.
 2016-06-03 08:54:25 -04:00
David Thompson c86f0207ce
gnu: Add emacs-rainbow-delimiters. 
* gnu/packages/emacs.scm (emacs-rainbow-delimiters): New variable.
 2016-06-03 08:54:25 -04:00
David Thompson 4aea1e0160
gnu: Add emacs-elfeed. 
* gnu/pacakges/emacs.scm (emacs-elfeed): New variable.
 2016-06-03 08:54:25 -04:00
David Thompson a2670dde10
gnu: Add emacs-projectile. 
* gnu/packages/emacs.scm (emacs-projectile): New variable.
 2016-06-03 08:54:25 -04:00
David Thompson b78b6e8040
gnu: Add emacs-markdown-mode. 
* gnu/packages/emacs.scm (emacs-markdown-mode): New variable.
 2016-06-03 08:54:25 -04:00
David Thompson 3e5be84b69
gnu: Add emacs-js2-mode. 
* gnu/packages/emacs.scm (emacs-js2-mode): New variable.
 2016-06-03 08:54:25 -04:00
David Thompson c5c08f1b1e
gnu: Add emacs-smex. 
* gnu/packages/emacs.scm (emacs-smex): New variable.
 2016-06-03 08:54:25 -04:00
Ludovic Courtès ad1c453731
gnu: ipopt: Use libblas from LAPACK, and fix 'Libs' in 'ipopt.pc'. 
* gnu/packages/maths.scm (ipopt)[inputs]: Remove OPENBLAS.
[arguments]: New field.
 2016-06-03 14:37:26 +02:00
Ludovic Courtès f9940ef1e8
gnu: Add ceres-solver. 
* gnu/packages/maths.scm (ceres): New variable.
 2016-06-03 13:54:39 +02:00
Ludovic Courtès 4b4e1b4b26
gnu: Add gflags. 
* gnu/packages/popt.scm (gflags): New variable.
 2016-06-03 13:54:39 +02:00
Efraim Flashner 085115ed8c
gnu: gdb: Update to 7.11.1. 
* gnu/packages/gdb.scm (gdb): Update to 7.11.1.
 2016-06-03 13:52:23 +03:00
McKinley Olsen 89978a0a0d
gnu: Add Termite. 
* gnu/packages/terminals.scm (termite): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-03 10:26:42 +02:00
Mark H Weaver d9e61683cc
gnu: linux-libre: Update to 4.6.1. 
* gnu/packages/linux.scm (linux-libre): Update to 4.6.1.
 2016-06-03 03:51:58 -04:00
Mark H Weaver 7f125616ca
gnu: linux-libre-4.4: Update to 4.4.12. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.12.
 2016-06-03 03:50:20 -04:00
Ludovic Courtès 6cde5c34a1
gnu: icecat: Install '.desktop' entry. 
Fixes <http://bugs.gnu.org/23094>.
Reported by Danny Milosavljevic <dannym@scratchpost.org>.

* gnu/packages/gnuzilla.scm (icecat)[arguments]: Add
'install-desktop-entry' phase.
 2016-06-02 19:11:14 +02:00
Ludovic Courtès 005c787d59
gnu: Add IpOpt. 
* gnu/packages/maths.scm (ipopt): New variable.
 2016-06-02 19:11:14 +02:00
David Thompson 7cd9b01407 gnu: bundler: Update to 1.12.5. 
* guix/packages/ruby.scm (bundler): Update to 1.12.5.
 2016-06-02 10:47:06 -04:00
Lukas Gradl 4ff2060524
gnu: Add libiax2. 
* gnu/packages/telephony.scm (libiax2): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-06-01 21:32:22 -04:00
Leo Famulari 234d0b6914
gnu: certbot, python-acme: Update to 0.7.0. 
These packages should be updated together.

* gnu/packages/tls.scm (certbot): Update to 0.7.0.
(arguments): Adjust 'docs' phase to new build system and work around upstream
typo.
(python-acme, python2-acme): Update to 0.7.0.
 2016-06-01 20:31:54 -04:00
Hartmut Goebel 4a23818659
gnu: Add python2-ipaddr. 
* gnu/packages/python.scm: (python2-ipaddr): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-01 22:42:35 +02:00
Hartmut Goebel 1a024de45e
gnu: Add python-sqlparse and python2-sqlparse. 
* gnu/packages/python.scm (python-sqlparse, python2-sqlparse):
New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-01 22:38:45 +02:00
Hartmut Goebel b8fdbca320
gnu: Add python-tblib and python2-tblib. 
* gnu/packages/python.scm (python-tblib, python2-tblib): New
variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-01 22:31:26 +02:00
Hartmut Goebel af3166c335
gnu: Add dfu-util. 
* gnu/packages/flashing-tools.scm (dfu-util): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-01 22:26:06 +02:00
McKinley Olsen c44fb4df8a
gnu: Add vte-ng. 
* gnu/packages/gnome.scm (vte-ng): New variable.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-06-01 21:25:16 +08:00
Leo Famulari 1c6303fae0
gnu: icedtea: Update to 1.13.11. 
Fixes CVE-2016-{0686, 0687, 0695, 3425, 3427}.

* gnu/packages/patches/icedtea-remove-overrides.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/java.scm (icedtea): Update to 1.13.11.
[source]: Use the patch.
[inputs]: Add libxcomposite.
 2016-06-01 02:29:01 -04:00
Mark H Weaver f0e60e89cb
gnu: autogen: Fix source URL. 
* gnu/packages/autogen.scm (autogen)[source]: Fix source URL.
 2016-06-01 00:00:36 -04:00
Danny Milosavljevic f40dfcd055
gnu: rofi: New variable. 
* gnu/packages/xdisorg.scm (rofi): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-31 17:21:11 -04:00
Alex Kost 37dbfc5084
gnu: emacs-constants: Fix source file-name. 
Fixes a regression introduced in f99f3f24ef.

* gnu/packages/emacs.scm (emacs-constants)[source]: Fix file-name.
 2016-05-31 23:51:54 +03:00
Tomáš Čech 7a0094a5f2
gnu: taskwarrior: Update to 2.5.1 
* gnu/packages/task-management.scm (taskwarrior): Update to 2.5.1.
 2016-05-31 22:14:52 +02:00
Tomáš Čech 6ba8ca17fb
gnu: Add py3status. 
* gnu/packages/python.scm (python-py3status): New variable.
 2016-05-31 22:08:10 +02:00
Efraim Flashner c095330a8c
gnu: nginx: Update to 1.10.1 [Fixes CVE-2016-4450]. 
* gnu/packages/web.scm (nginx): Update to 1.10.1.
 2016-05-31 22:50:41 +03:00
Efraim Flashner 99e4aa54a6
gnu: autogen: Use 'modify-phases'. 
* gnu/packages/autogen.scm (autogen)[arguments]: Use 'modify-phases'.
 2016-05-31 22:24:59 +03:00
Efraim Flashner e85ff3e2fd
gnu: autogen: Update to 5.18.10. 
* gnu/packages/autogen.scm (autogen): Update to 5.18.10.
 2016-05-31 22:20:57 +03:00
Efraim Flashner d5047266a9
gnu: scrot: Use 'modify-phases'. 
* gnu/packages/xdisorg.scm (scrot)[arguments]: Use 'modify-phases'.
 2016-05-31 22:11:35 +03:00
Efraim Flashner c5d15d41b7
gnu: scrot: Fix typo in source uri. 
* gnu/packages/xdisorg.scm (scrot)[source]: Fix typo in uri.

This is a follow-up to 9da459f350.
 2016-05-31 22:09:43 +03:00
Efraim Flashner 2fe176be0f
gnu: emms: Use 'modify-phases'. 
* gnu/packages/emacs.scm (emms)[arguments]: Use 'modify-phases'.
 2016-05-31 22:05:44 +03:00
Efraim Flashner 0985f5269c
gnu: emms: Update to 4.1. 
* gnu/packages/emacs.scm (emms): Update to 4.1.
 2016-05-31 22:05:44 +03:00
Efraim Flashner b1b8497925
gnu: librecad: Update to 2.0.11. 
* gnu/packages/engineering.scm (librecad): Update to 2.0.11.
 2016-05-31 22:05:44 +03:00
Efraim Flashner 805117827c
gnu: dosfstools: Update to 4.0. 
* gnu/packages/disk.scm (dosfstools): Update to 4.0.
[arguments]: Re-enable the 'configure phase.
 2016-05-31 22:05:44 +03:00
Efraim Flashner 2b8ca5fcb4
gnu: microscheme: Update to 0.9.3. 
* gnu/packages/avr.scm (microscheme): Update to 0.9.3.
 2016-05-31 22:05:44 +03:00
Efraim Flashner b52ae4de46
gnu: munge: Update to 0.5.12. 
* gnu/packages/admin.scm (munge): Update to 0.5.12.
 2016-05-31 22:05:44 +03:00
Efraim Flashner 57d83cd29b
gnu: obs: Update to 0.14.2. 
* gnu/packages/video.scm (obs): Update to 0.14.2.
 2016-05-31 22:05:44 +03:00
David Thompson 13384842f8
gnu: emacs-better-defaults: Specify source file name. 
* gnu/packages/emacs.scm (emacs-better-defaults)[source]: Specify a
  useful file name, as usual with tarballs from GitHub.
 2016-05-31 13:41:15 -04:00
Leo Famulari e88eb07110
gnu: imagemagick: Fix CVE-2016-5118. 
* gnu/packages/patches/imagemagick-CVE-2016-5118.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/imagemagick.scm (imagemagick): Use it.
 2016-05-31 13:38:40 -04:00
Leo Famulari 4d93a76138
gnu: graphicsmagick: Update to 1.3.24 [security update]. 
Fixes CVE-2016-{2317, 2318, 5118} and many other security issues
described in 'NEWS.txt'.

* gnu/packages/patches/graphicsmagick-CVE-2016-5118.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/imagemagick.scm (graphicsmagick): Update to 1.3.24.
[source]: Remove patch.
 2016-05-31 13:33:09 -04:00
Ricardo Wurmus 23aab4ab2c
gnu: Add ghmm. 
* gnu/packages/machine-learning.scm (ghmm): New variable.
 2016-05-31 17:01:03 +02:00
Efraim Flashner a5dd8db4ff
gnu: gimp: Update to 2.8.16. 
* gnu/packages/gimp.scm (gimp): Update to 2.8.16.
 2016-05-31 17:50:08 +03:00
Ricardo Wurmus 64efa3078a
gnu: Add r-genomationdata. 
* gnu/packages/bioinformatics.scm (r-genomationdata): New variable.
 2016-05-31 16:29:37 +02:00
Ricardo Wurmus aa3b391092
gnu: Add r-runit. 
* gnu/packages/statistics.scm (r-runit): New variable.
 2016-05-31 16:24:59 +02:00
Ricardo Wurmus 8170172502
gnu: julia: Update to 0.4.5. 
* gnu/packages/julia.scm (julia): Update to 0.4.5.
(libuv-julia): Update commit.
 2016-05-31 16:21:31 +02:00
Ricardo Wurmus 4ce3c2872b
gnu: Add r-knitrbootstrap. 
* gnu/packages/statistics.scm (r-knitrbootstrap): New variable.
 2016-05-31 16:18:14 +02:00
Leo Famulari df2dd07b88
gnu: libxml2: Update replacement to 2.9.4 [security fixes]. 
This fixes CVE-2016-{1762, 1833, 1834, 1835, 1836, 1837, 1838, 1839,
1840, 3627, 3705, 4483}.

* gnu/packages/patches/libxml2-CVE-2016-3627.patch,
gnu/packages/patches/libxml2-CVE-2016-3705.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/xml.scm (libxml2/fixed): Update to 2.9.4.
[source]: Remove patches.
 2016-05-30 21:47:40 -04:00
Efraim Flashner f80d5fe02e
gnu: vapoursynth: Update to 32. 
* gnu/packages/video.scm (vapoursynth): Update to 32.
 2016-05-30 22:22:26 +03:00
Efraim Flashner 365a4a7f40
gnu: Add zimg. 
* gnu/packages/image.scm (zimg): New variable.
 2016-05-30 22:22:25 +03:00
Efraim Flashner fd1461879c
gnu: mcrypt: Fix CVE-2012-4409, CVE-2012-4426, CVE-2012-4527. 
* gnu/packages/mcrypt.scm (mcrypt)[source]: Add patches.
* gnu/packages/patches/mcrypt-CVE-2012-4409.patch,
gnu/packages/patches/mcrypt-CVE-2012-4426.patch,
gnu/packages/patches/mcrypt-CVE-2012-4527.patch: New variables.
* gnu/local.mk (dist_patch_DATA): Add them.
 2016-05-30 21:57:36 +03:00
Leo Famulari 5ae77a6f5a
gnu: imagemagick: Update to 6.9.4-5. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4-5.
 2016-05-30 14:08:08 -04:00
David Thompson 503a43f3fc gnu: Remove xgcc-avr. 
We now have a dedicated package module for the AVR toolchain with
important modifications on top of what cross-gcc produces.

* gnu/packages/cross-base.scm (xgcc-avr): Delete.
 2016-05-30 13:45:21 -04:00
David Thompson 9d2bab09aa gnu: Add avr-toolchain. 
* gnu/packages/avr.scm (avr-toolchain): New procedure.
(avr-toolchain-4.9, avr-toolchain-5): New variables.
 2016-05-30 13:45:21 -04:00
David Thompson 3087b7077c gnu: avr-libc: Update to 2.0.0. 
* gnu/packages/avr.scm (avr-libc): Update to 2.0.0.
 2016-05-30 13:45:21 -04:00
David Thompson e60972f288 gnu: avr-libc: Fix build. 
* gnu/packages/avr.scm (avr-libc): Update to 2.0.0.
[native-inputs]: Use new avr-gcc and avr-binutils.
[arguments]: Add phase to unset C_INCLUDE_PATH.
 2016-05-30 13:45:21 -04:00
David Thompson a17eea4ba4 gnu: Add avr-gcc-5. 
* gnu/packages/avr.scm (avr-gcc-5): New variable.
 2016-05-30 13:45:21 -04:00
David Thompson 09b05fc7e9 gnu: Add avr-gcc. 
* gnu/packages/avr.scm (avr-gcc): New variable.
 2016-05-30 13:45:21 -04:00
David Thompson cdc5cfdc4a gnu: Add avr-binutils. 
* gnu/packages/avr.scm (avr-binutils): New variable.
 2016-05-30 13:45:21 -04:00
Efraim Flashner 983911d627
gnu: wordnet: Use 'modify-phases'. 
* gnu/packages/wordnet.scm (wordnet)[arguments]: Use 'modify-phases'.
 2016-05-30 20:19:04 +03:00
Efraim Flashner c1dbd3a870
gnu: wordnet: Fix CVE-2008-2149, CVE-2008-3908. 
* gnu/packages/wordnet.scm (wordnet)[source]: Add patches.
* gnu/packages/patches/wordnet-CVE-2008-2149.patch,
gnu/packages/patches/wordnet-CVE-2008-3908-pt1.patch,
gnu/packages/patches/wordnet-CVE-2008-3908-pt2.patch: New variables.
* gnu/local.mk (dist_patch_DATA): Add them.
 2016-05-30 20:14:06 +03:00
Efraim Flashner 1f521b7055
gnu: id3lib: Fix CVE-2007-4460. 
* gnu/packages/mp3.scm (id3lib)[source]: Add patch.
* gnu/packages/patches/id3lib-CVE-2007-4460.patch: New variable.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-05-30 20:13:24 +03:00
Leo Famulari 3d55d04ab8
gnu: cyrus-sasl: Update URLs. 
* gnu/packages/cyrus-sasl.scm (cyrus-sasl)[source]: Use HTTPS URL.
[home-page]: Update home-page URL.
 2016-05-30 12:53:23 -04:00
Leo Famulari 726f088884
gnu: devil: Fix CVE-2009-3994. 
* gnu/packages/patches/devil-CVE-2009-3994.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (devil): Use it.
 2016-05-30 12:36:26 -04:00
Leo Famulari ac9fc78ff0
gnu: iptables: Update to 1.4.21. 
* gnu/packages/linux.scm (iptables): Update to 1.4.21.
 2016-05-30 12:18:57 -04:00
David Thompson 6ede256f77 gnu: Add emacs-better-defaults. 
* gnu/packages/emacs.scm (emacs-better-defaults): New variable.
 2016-05-30 11:10:49 -04:00
David Thompson 02736daa8c gnu: emacs: Remove uncompressed-file-fetch. 
* gnu/packages/emacs.scm (uncompressed-file-fetch): Delete.
(emacs-rfcview, emacs-ffap-rfc-space, emacs-queue, emacs-spinner):
Replace uncompressed-file-fetch with url-fetch.
 2016-05-30 11:06:49 -04:00
humanitiesNerd 62a45cb647
gnu: Add emacs-seq. 
* gnu/packages/emacs.scm (emacs-seq): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-05-30 13:11:39 +03:00
humanitiesNerd 565bccc569
gnu: Add emacs-spinner. 
* gnu/packages/emacs.scm (emacs-spinner): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-05-30 13:11:39 +03:00
humanitiesNerd 32abfcf4ee
gnu: Add emacs-pkg-info. 
* gnu/packages/emacs.scm (emacs-pkg-info): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-05-30 13:09:43 +03:00
humanitiesNerd ad6c4bc48a
gnu: Add emacs-queue. 
*  gnu/packages/emacs.scm (emacs-queue): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-05-30 13:09:43 +03:00
Alex Kost 4509ec72a4
gnu: emacs: Fix indentation of scheme keyword lists. 
* gnu/packages/patches/emacs-fix-scheme-indent-function.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/emacs.scm (emacs)[source]: Use it.
 2016-05-30 13:09:43 +03:00
Efraim Flashner 5f1ba08953
gnu: gegl: Fix CVE-2012-4433. 
* gnu/packages/gimp.scm (gegl)[source]: Add patch.
* gnu/packages/patches/gegl-CVE-2012-4433.patch: New variable.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-05-30 12:09:17 +03:00
Efraim Flashner 7d48938a59
gnu: vte-0.28: Fix CVE-2012-2738. 
* gnu/packages/gnome.scm (vte-0.28)[source]: Add patches.
* gnu/packages/patches/vte-CVE-2012-2738-pt1.patch,
gnu/packages/patches/vte-CVE-2012-2738-pt2.patch: New variables.
* gnu/local.mk (dist_patch_DATA): Add them.
 2016-05-30 12:09:15 +03:00
Efraim Flashner 4f3e02f198
gnu: t1lib: Fix CVE-2010-2642, CVE-2011-{0764, 1552, 1553, 1554}. 
* gnu/packages/fontutils.scm (t1lib)[source]: Add patches.
* gnu/packages/patches/t1lib-CVE-2010-2642.patch,
gnu/packages/patches/t1lib-CVE-2011-0764.patch,
gnu/packages/patches/t1lib-CVE-2011-1552+CVE-2011-1553+CVE-2011-1554.patch: New variables.
* gnu/local.mk (dist_patch_DATA): Add them.
 2016-05-30 12:09:14 +03:00
Efraim Flashner f228aa1543
gnu: dtach: Use 'modify-phases'. 
* gnu/packages/screen.scm (dtach)[arguments]: Use 'modify-phases'.
 2016-05-30 12:09:12 +03:00
Efraim Flashner 4b23c4b36a
gnu: dtach: Update to 0.9 [Fixes CVE-2012-3368]. 
* gnu/packages/screen.scm (dtach): Update to 0.9.
 2016-05-30 12:09:10 +03:00
Efraim Flashner b507646160
gnu: tinyproxy: Update to 1.8.4 [Fixes CVE-2012-3505]. 
* gnu/packages/web.scm (tinyproxy): Update to 1.8.4.
[source]: Download from new location.
[home-page]: Project has moved to Github.
 2016-05-30 12:08:48 +03:00
Efraim Flashner 538884ccef
gnu: jansson: Fix CVE-2016-4425. 
* gnu/packages/web.scm (jansson)[source]: Add patch.
* gnu/packages/patches/jansson-CVE-2016-4425.patch: New variable.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-05-30 09:57:16 +03:00
Efraim Flashner 9116f12690
gnu: antiword: Fix CVE-2014-8123. 
* gnu/packages/textutils.scm (antiword)[source]: Add patch.
* gnu/packages/patches/antiword-CVE-2014-8123: New variable.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-05-30 09:57:09 +03:00
Efraim Flashner d01f680c07
gnu: a2ps: Use 'modify-phases'. 
* gnu/packages/pretty-print.scm (a2ps)[arguments]: Use 'modify-phases'.
 2016-05-30 07:44:29 +03:00
Efraim Flashner 6447e19108
gnu: a2ps: Fix CVE-2001-1593, CVE-2014-0466. 
* gnu/packages/pretty-print.scm (a2ps)[source]: Add patches.
* gnu/packages/patches/a2ps-CVE-2001-1593.patch,
gnu/packages/patches/a2ps-CVE-2014-0466.patch: New variables.
* gnu/local.mk (dist_patch_DATA): Add them.
 2016-05-30 07:44:29 +03:00
Leo Famulari ccda7c8317
gnu: pcre2: Fix CVE-2016-3191. 
* gnu/packages/patches/pcre2-CVE-2016-3191.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pcre.scm (pcre2): Use it.
 2016-05-29 23:57:31 -04:00
Leo Famulari 0d567b5531
gnu: libyaml: Fix CVE-2014-9130. 
* gnu/packages/patches/libyaml-CVE-2014-9130.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/web.scm (libyaml): Use it.
 2016-05-29 23:48:28 -04:00
Leo Famulari d8862778c1
gnu: graphicsmagick: Fix CVE-2016-5118. 
* gnu/packages/patches/graphicsmagick-CVE-2016-5118.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/imagemagick.scm (graphicsmagick): Use it.
 2016-05-29 23:46:21 -04:00
Efraim Flashner b3d20b8280
gnu: vorbis-tools: Fix CVE-2014-9638, CVE-2014-9639, CVE-2014-9640. 
* gnu/packages/xiph.scm (vorbis-tools)[source]: Add patches.
* gnu/packages/patches/vorbis-tools-CVE-2014-9638+CVE-2014-9639.patch,
gnu/packages/patches/vorbis-tools-CVE-2014-9640.patch: New variables.
* gnu/local.mk (dist_patch_DATA): Add them.
 2016-05-30 06:42:02 +03:00
Efraim Flashner e99dd67ad8
gnu: libtar: Fix CVE-2013-4420. 
* gnu/packages/compression.scm (libtar)[source]: Add patch.
* gnu/packages/patches/libtar-CVE-2013-4420.patch: New variable.
* gnu/local.mk (dist_patch_DATA): Add it.

This is a follow-up to 89d80159b1.
 2016-05-30 06:04:46 +03:00
Ludovic Courtès 28dc10a455
gnu: glibc: Refer to the target kernel headers when cross-compiling. 
This fixes a regression introduced in
efc4eb1475 whereby the build process
corresponding to 'guix build glibc --target=mips64el-linux-gnu' would
refer to the native headers instead of the target headers, leading to a
build failure:

  ../sysdeps/unix/sysv/linux/statfs64.c: In function ‘__statfs64’:
  ../sysdeps/unix/sysv/linux/statfs64.c:73:1: error: control reaches end of non-void function [-Werror=return-type]
   }
   ^

When we were using CROSS_CPATH instead of CROSS_C_INCLUDE_PATH, the
problem was hidden by the fact that CPATH corresponds to '-I' whereas
C_INCLUDE_PATH corresponds to '-isystem', and '-isystem' directories are
searched after '-I' directories.

* gnu/packages/base.scm (glibc)[arguments]: Refer to the kernel headers
from '%build-target-inputs' when cross-building.
 2016-05-30 00:17:44 +02:00
Efraim Flashner 89d80159b1
gnu: libtar: Update to 1.2.20 [fixes CVE-2013-4397, CVE-2013-4420]. 
* gnu/packages/compression.scm (libtar): Update to 1.2.20.
[source]: Add Debian mirror.
[arguments]: Add 'autoconf phase.
[native-inputs]: Add autoconf, automake, libtool.
[inputs]: Add zlib.
[home-page]: Point to temporary home.
 2016-05-29 22:47:05 +03:00
Efraim Flashner 43ec6ca06e
gnu: pciutils: Add kmod support. 
* gnu/packages/pciutils.scm (pciutils)[inputs]: Add kmod.
 2016-05-29 22:07:47 +03:00
Efraim Flashner 0ef7a93d78
gnu: pciutils: Use 'modify-phases'. 
* gnu/packages/pciutils.scm (pciutils)[arguments]: Use 'modify-phases'.
 2016-05-29 22:07:47 +03:00
Efraim Flashner fb3c855381
gnu: pciutils: Update to 3.5.1. 
* gnu/packages/pciutils.scm (pciutils): Update to 3.5.1.
 2016-05-29 22:07:47 +03:00
Leo Famulari 65da8dd01e
gnu: rpm: Fix CVE-2014-8118. 
* gnu/packages/patches/rpm-CVE-2014-8118.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/package-management.scm (rpm): Use it.
 2016-05-29 14:02:08 -04:00
Leo Famulari 41019e9f2a
gnu: rpm: Update to 4.12.0.1. 
* gnu/packages/package-management.scm (rpm): Update to 4.12.0.1.
 2016-05-29 14:02:08 -04:00
Leo Famulari d6c108a916
gnu: zeromq: Update to 4.0.7 [fixes CVE-2014-9721]. 
* gnu/packages/networking.scm (zeromq): Update to 4.0.7.
 2016-05-29 13:40:38 -04:00
Leo Famulari 5d1cd076de
gnu: libsodium: Update to 1.0.10. 
* gnu/packages/crypto.scm (libsodium): Update to 1.0.10.
 2016-05-29 13:27:05 -04:00
Leo Famulari 1d982d787d
gnu: procmail: Fix CVE-2014-3618. 
* gnu/packages/patches/procmail-CVE-2014-3618.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mail.scm (procmail): Use it.
 2016-05-29 13:12:16 -04:00
Leo Famulari c68d8126f9
gnu: elfutils: Update to 0.166 [fixes CVE-2014-9447]. 
* gnu/packages/elf.scm (elfutils): Update to 0.166.
 2016-05-29 12:49:50 -04:00
Efraim Flashner 89deaf167a
gnu: luajit: Update to 2.0.4. 
* gnu/packages/lua.scm (luajit): Update to 2.0.4.
 2016-05-29 09:47:46 +03:00
Efraim Flashner 2cb33ef86e
gnu: lua: Update to 5.2.4. 
* gnu/packages/lua.scm (lua): Update to 5.2.4.
 2016-05-29 09:47:46 +03:00
Efraim Flashner a4349e7a00
gnu: lua: Use 'modify-phases'. 
* gnu/packages/lua.scm (lua)[arguments]: Use 'modify-phases'.
 2016-05-29 09:47:46 +03:00
Efraim Flashner 32fddd8e29
gnu: lua-5.1: Fix CVE-2014-5461. 
* gnu/packages/lua.scm (lua-5.1)[source]: Add patch.
* gnu/packages/patches/lua-CVE-2014-5461: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-05-29 09:47:46 +03:00
宋文武 576b1aeed6
gnu: retroarch: Update to 1.3.4. 
* gnu/packages/games.scm (retroarch): Update to 1.3.4.
 2016-05-29 11:12:12 +08:00
Leo Famulari e00df583a2
gnu: libyaml: Update to 0.1.6 [fixes CVE-2014-2525]. 
* gnu/packages/web.scm (libyaml): Update to 0.1.6.
 2016-05-28 20:21:12 -04:00
Efraim Flashner 922fe075d1
gnu: potrace: Update to 1.13 [fixes CVE-2013-7437]. 
* gnu/packages/fontutils.scm (potrace): Update to 1.13.
 2016-05-28 22:57:16 +03:00
Patrick Hetu 9b381643f0
gnu: Add Guile-GNOME. 
* gnu/packages/gtk.scm (guile-gnome): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-28 18:06:15 +02:00
Ben Woodcroft 9fcc3509a7 gnu: Update diamond to 0.8.3. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.3.
 2016-05-28 23:44:16 +10:00
宋文武 68e9ee725a
gnu: Add gcide. 
* gnu/packages/dictionaries.scm (gcide): New variable.
 2016-05-28 12:53:01 +08:00
宋文武 de477809d7
gnu: wxmaxima: Wrap with GSETTINGS_SCHEMA_DIR and XDG_DATA_DIRS. 
Fixes <http://bugs.gnu.org/22709> and <http://bugs.gnu.org/23260>.

* gnu/packages/math.scm (wxmaxima)[arguments]: Wrap with
GSETTINGS_SCHEMA_DIR and XDG_DATA_DIRS.
 2016-05-28 07:29:10 +08:00
宋文武 1a6d3cd374
gnu: gprolog: Don't install files into "$out/gprolog-1.4.4". 
* gnu/packages/gprolog.scm (gprolog)[arguments]: Pass '--with-install-dir'
to #:configure-flags.
 2016-05-28 07:27:46 +08:00
宋文武 6242b314c2
gnu: Add wiredtiger. 
* gnu/packages/database.scm (wiredtiger): New variable.
 2016-05-28 07:27:46 +08:00
Leo Famulari b5d08d7c28
gnu: gd: Update to 2.2.1 [fixes CVE-2015-{8874, 8877}]. 
* gnu/packages/patches/gd-CVE-2016-3074.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/gd.scm (gd): Update to 2.2.1.
[source]: Remove patch. Update source URL.
 2016-05-27 12:33:42 -04:00
Efraim Flashner 9da459f350
gnu: scrot: Add source mirror. 
* gnu/packages/xdisorg.scm (scrot)[source]: Add fossies mirror.
 2016-05-27 16:49:12 +03:00
Efraim Flashner 6d22653e39
gnu: serf: Update project source. 
* gnu/packages/web.scm (serf)[source]: Releases are now hosted by Apache.
[home-page]: Project is now hosted by Apache.
 2016-05-27 16:40:05 +03:00
Efraim Flashner e4ddf924e5
gnu: xlockmore: Update to 5.47. 
* gnu/packages/xdisorg.scm (xlockmore): Update to 5.47.
 2016-05-27 16:35:47 +03:00
Efraim Flashner a60c705bd8
gnu: t1lib: Add source mirror. 
* gnu/packages/fontutils.scm (t1lib)[souce]: Add fossies mirror.
 2016-05-27 16:23:21 +03:00
Efraim Flashner 63ae20da16
gnu: synergy: Update to 1.7.6. 
* gnu/packages/synergy.scm (synergy): Update to 1.7.6.
 2016-05-27 16:07:20 +03:00
Efraim Flashner a3025a4490
gnu: synergy: Use 'modify-phases'. 
* gnu/packages/synergy.scm (synergy)[arguments]; Use 'modify-phases'.
 2016-05-27 15:54:10 +03:00
Efraim Flashner cecaee420e
gnu: synergy: Update project source. 
* gnu/packages/synergy.scm (synergy)[source]: Use new location.
[home-page]: Use project's new website.
 2016-05-27 14:56:49 +03:00
Efraim Flashner ea3d5291cc
gnu: eyed3: Update to 0.7.9. 
* gnu/packages/mp3.scm (eyed3): Update to 0.7.9.
 2016-05-27 11:37:53 +03:00
Efraim Flashner 1a847b708d
gnu: mpc123: Use 'modify-phases'. 
* gnu/packages/mp3.scm (mpc123)[arguments]: Use 'modify-phases'.
 2016-05-27 11:37:53 +03:00
Efraim Flashner d1cd67af5d
gnu: mpc123: Add new source location. 
* gnu/packages/mp3.scm (mpc123)[source]: Add Debian mirror.
[home-page]: Project has moved to Github.
 2016-05-27 11:37:53 +03:00
humanitiesNerd d345491ab4
gnu: Add emacs-epl. 
* gnu/packages/emacs.scm (emacs-epl): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-05-27 11:02:54 +03:00
Alex Kost a8ce82aca2
gnu: emacs-async: Update to 1.9. 
* gnu/packages/emacs.scm (emacs-async): Update to 1.9.
 2016-05-27 10:50:37 +03:00
Alex Kost 847534e1d3
gnu: magit: Update to 2.7.0. 
* gnu/packages/emacs.scm (magit): Update to 2.7.0.
 2016-05-27 10:50:37 +03:00
Efraim Flashner be1e35055b
gnu: moreutils: Use 'modify-phases'. 
* gnu/packages/moreutils.scm (moreutils)[arguments]: Use 'modify-phases'.
 2016-05-27 07:06:02 +03:00
Efraim Flashner 0a20f40240
gnu: moreutils: Update to 0.58. 
* gnu/packages/moreutils.scm (moreutils): Update to 0.58.
 2016-05-27 07:03:52 +03:00
Ludovic Courtès de3bbf6543
gnu: qemu: Make tests more verbose. 
* gnu/packages/qemu.scm (qemu)[arguments]: Add 'make-gtester-verbose'
phase.
 2016-05-26 23:58:23 +02:00
Ludovic Courtès 8489d79d1b
gnu: qemu: Use 'install-file' instead of 'copy-file'. 
* gnu/packages/qemu.scm (qemu)[arguments]: Use 'install-file'.
 2016-05-26 23:58:23 +02:00
Ludovic Courtès 05051e8bb1
gnu: qemu: Use 'modify-phases'. 
* gnu/packages/qemu.scm (qemu)[arguments]: Use 'modify-phases'.
 2016-05-26 23:58:23 +02:00
Ludovic Courtès 219b45567a
gnu: qemu: Disable parallel tests again. 
* gnu/packages/qemu.scm (qemu)[arguments]: Re-add #:parallel-tests? #f,
which had been removed in a2ccaa0d79.
 2016-05-26 23:58:21 +02:00
Ludovic Courtès 159a5e0197
gnu: isc-dhcp: Specify CPE name. 
* gnu/packages/admin.scm (isc-dhcp)[properties]: New field.
 2016-05-26 22:56:51 +02:00
Ludovic Courtès 2ca55f939c
gnu: rush: Fix CVE-2013-6889. 
* gnu/packages/patches/rush-CVE-2013-6889.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/rush.scm (rush): Use it.
 2016-05-26 22:51:12 +02:00
David Thompson 9698f4b74b gnu: Add mitlm. 
* gnu/packages/speech.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2016-05-26 08:50:09 -04:00
David Thompson 6b0686fa93 gnu: Add autoconf-archive. 
* gnu/packages/autotools.scm (autoconf-archive): New variable.
 2016-05-26 08:50:09 -04:00
Manolis Ragkousis 38efbcbb79
gnu: hurd: Add hurd-core-headers package. 
* gnu/packages/hurd.scm (hurd-core-headers): New variable.
 2016-05-26 14:41:56 +03:00
Roel Janssen 4791876ce1
gnu: Add texmaker. 
* gnu/packages/tex.scm (texmaker): New variable.
 2016-05-26 10:24:13 +02:00
Roel Janssen 8f9ac90182
gnu: Rename texlive module to tex. 
* gnu/local.mk (GNU_SYSTEM_MODULES): Rename texlive.scm to tex.scm.
* gnu/packages/texlive.scm: Rename file to tex.scm.
* gnu/packages/tex.scm: Renamed from texlive.scm.
* gnu/packages/algebra.scm: Adjust accordingly.
* gnu/packages/docbook.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/gettext.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/lisp.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/ocaml.scm: Likewise.
* gnu/packages/photo.scm: Likewise.
* gnu/packages/plotutils.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/scheme.scm: Likewise.
 2016-05-26 10:22:05 +02:00
Efraim Flashner 5bed95efd4
gnu: aria2: Update to 1.23.0. 
* gnu/packages/bittorrent.scm (aria2): Update to 1.23.0.
[inputs]: Move cppunit ...
[native-inputs]: ... to here.
[home-page]: Update to new Github website.
 2016-05-26 08:59:41 +03:00
Efraim Flashner 25e0037a29
gnu: randomjungle: Add gfortran:lib to native-inputs. 
* gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Add
gfortran:lib.
 2016-05-25 21:49:08 +03:00
Efraim Flashner 68bf2f9d6b
gnu: enlightenment: Update to 0.20.8. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.20.8.
 2016-05-25 20:52:25 +03:00
Efraim Flashner fac5065b8f
gnu: elementary: Update to 1.17.1. 
* gnu/packages/enlightenment.scm (elementary): Update to 1.17.1.
 2016-05-25 20:51:48 +03:00
Efraim Flashner cda20b86cf
gnu: efl: Update to 1.17.1. 
* gnu/packages/enlightenment.scm (efl): Update to 1.17.1.
 2016-05-25 20:51:48 +03:00
Leo Famulari 10240c7cbe
gnu: python-llfuse: Update to 1.1. 
* gnu/packages/python.scm (python-llfuse, python2-llfuse): Update to 1.1.
 2016-05-25 11:50:20 -04:00
Leo Famulari 0e9bc883b4
gnu: fuse: Update to 2.9.6. 
* gnu/packages/linux.scm (fuse): Update to 2.9.6.
[home-page]: Update home-page URL.
 2016-05-25 11:50:20 -04:00
Leo Famulari c99bf9b2ea
gnu: dnsmasq: Update to 2.76 [fixes CVE-2015-3294]. 
* gnu/packages/dns.scm (dnsmasq): Update to 2.76.
 2016-05-25 11:47:51 -04:00
Ben Woodcroft 803bcc81e2 gnu: ruby-mime-types: Update to 3.1. 
* gnu/packages/ruby.scm (ruby-mime-types): Update to 3.1.
[native-inputs]: Add 'ruby-minitest-hooks'.
 2016-05-25 22:34:29 +10:00
Ben Woodcroft 2a96dbe6d6 gnu: Add ruby-minitest-hooks. 
* gnu/packages/ruby.scm (ruby-minitest-hooks): New variable.
 2016-05-25 22:34:29 +10:00
Ben Woodcroft cbdd428cf4 gnu: Add ruby-sequel. 
* gnu/packages/ruby.scm (ruby-sequel): New variable.
 2016-05-25 22:34:29 +10:00
Ben Woodcroft f1ae7c6218 gnu: ruby-nokogumbo: Update to 1.4.7-1. 
* gnu/packages/ruby.scm (ruby-nokogumbo): Update to 1.4.7-1.
 2016-05-25 22:34:29 +10:00
Ben Woodcroft 59884b71e3 gnu: ruby-mini-portile-2: Update to 2.1.0. 
* gnu/packages/ruby.scm (ruby-mini-portile-2): Update to 2.1.0.
 2016-05-25 22:34:29 +10:00
Ben Woodcroft 0907bf571d gnu: ruby-mime-types-data: Update to 3.2016.0221. 
* gnu/packages/ruby.scm (ruby-mime-types-data): Update to 3.2016.0221.
 2016-05-25 22:34:29 +10:00
Ben Woodcroft 80756fa66b gnu: ruby-shoulda-matchers: Update to 3.1.1. 
* gnu/packages/ruby.scm (ruby-shoulda-matchers): Update to 3.1.1.
[arguments]: Remove 'fix-import' phase.
 2016-05-25 22:34:29 +10:00
Ben Woodcroft 33a45ed652 gnu: ruby-domain-name: Update to 0.5.20160310. 
* gnu/packages/ruby.scm (ruby-domain-name): Update to 0.5.20160310.
 2016-05-25 22:34:29 +10:00
Ben Woodcroft 5e7f1b0b2a gnu: ruby-nokogiri: Update to 1.6.7.2. 
* gnu/packages/ruby.scm (ruby-nokogiri): Update to 1.6.7.2.
[arguments]: Relax 'mini_portile2' dependency.
 2016-05-25 22:34:29 +10:00
Mark H Weaver 2301195f2e
gnu: linux-libre: Update to 4.6. 
* gnu/packages/linux.scm (linux-libre): Update to 4.6.
* gnu/packages/linux-libre-4.6-x86_64.conf,
gnu/packages/linux-libre-4.6-i686.conf: New files.
* gnu/packages/linux-libre-4.5-x86_64.conf,
gnu/packages/linux-libre-4.5-i686.conf: Delete files.
* Makefile.am (KCONFIGS): Update accordingly.
 2016-05-25 04:54:06 -04:00
Mark H Weaver 92a7e46d58
gnu: python-libxml2: Drop replacement from inherited libxml2. 
This is a followup to commit 493e9a5a8f.

* gnu/packages/xml.scm (python-libxml2)[replacement]: Set to #f, overriding
inherited value.
 2016-05-25 04:54:06 -04:00
Efraim Flashner 19d6248634
gnu: freeipmi: Update to 1.5.2. 
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.5.2.
 2016-05-25 09:13:13 +03:00
Mark H Weaver 796787a577
gnu: linux-libre-4.1: Update to 4.1.25. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.25.
 2016-05-25 00:26:40 -04:00
Mark H Weaver 6f82a7d40d
gnu: webkitgtk: Update to 2.12.3 [fixes CVE-2016-{1856,1857}]. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.12.3.
 2016-05-25 00:14:32 -04:00
Ludovic Courtès 493e9a5a8f
gnu: libxml2: Fix CVE-2016-3627 and CVE-2016-3705. 
* gnu/packages/patches/libxml2-CVE-2016-3627.patch,
gnu/packages/patches/libxml2-CVE-2016-3705.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xml.scm (libxml2)[replacement]: New field.
(libxml2/fixed): New variable.
 2016-05-24 14:15:18 +02:00
humanitiesNerd 8eeb301de2
gnu: Add emacs-clojure-mode. 
* gnu/packages/emacs.scm (emacs-clojure-mode): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-05-24 11:32:42 +03:00
Alex Kost b8fc362239
gnu: Use 'emacs-minimal' instead of 'emacs-no-x'. 
* gnu/packages/code.scm (cflow)[native-inputs]: Use 'emacs-minimal'
  instead of 'emacs-no-x'.
* gnu/packages/databases.scm (recutils): Likewise.
* gnu/packages/finance.scm (ledger): Likewise
* gnu/packages/idutils.scm (idutils): Likewise.
* gnu/packages/mail.scm (mu): Likewise.
* gnu/packages/ocaml.scm (proof-general): Likewise.
* gnu/packages/package-management.scm (guix-0.10.0): Likewise.
* gnu/packages/plotutils.scm (asymptote): Likewise.
* gnu/packages/scheme.scm (scmutils): Likewise.
* gnu/packages/version-control.scm (vc-dwim): Likewise.
* gnu/packages/emacs.scm (geiser): Likewise.
(paredit): Likewise.
(git-modes): Likewise.
(magit): Likewise.
(magit-svn): Likewise.
(haskell-mode): Likewise.
(let-alist): Likewise.
(emacs-w3m): Likewise.
(emacs-wget): Likewise.
(emms): Likewise.
(bbdb): Likewise.
(emacs-mmm-mode): Likewise.
(emacs-pdf-tools): Likewise.
(emacs-popup)[native-inputs]: Remove as it is not needed for
emacs-build-system.
(emacs-rfcview): Likewise.
(emacs-ffap-rfc-space): Likewise.
 2016-05-24 11:32:27 +03:00
Alex Kost 6aaf38992c
gnu: Move emacs for building from inputs to native-inputs. 
* gnu/packages/emacs.scm (geiser): Move "emacs" from inputs to native-inputs.
(paredit): Likewise.
(haskell-mode): Likewise.
(emacs-w3m): Likewise.
(emacs-wget): Likewise.
* gnu/packages/mail.scm (mu): Likewise.
* gnu/packages/version-control.scm (vc-dwim): Likewise.
 2016-05-24 11:32:27 +03:00
Alex Kost a6eafbed66
build-system/emacs: Use 'emacs-minimal' by default. 
* guix/build-system/emacs.scm (default-emacs): Use 'emacs-minimal'.
* gnu/packages/emacs.scm (emacs-auctex): Use 'emacs'.
 2016-05-24 11:32:27 +03:00
Alex Kost b2eaf7bacd
gnu: Add emacs-minimal. 
* gnu/packages/emacs.scm (emacs-minimal): New variable.
 2016-05-24 11:32:27 +03:00
Alex Kost 486f36eb9e
gnu: emacs: Remove *.elc and autoloads from the tarball. 
* gnu/packages/emacs.scm (emacs)[source]: Add 'snippet' to remove
  compiled and generated elisp files.
 2016-05-24 11:11:26 +03:00
Efraim Flashner d16479c51e
gnu: enblend-enfuse: Update to 4.2. 
* gnu/packages/photo.scm (enblend-enfuse): Update to 4.2.
[native-inputs]: Add help2man, texlive-minimal.
 2016-05-24 08:49:23 +03:00
Leo Famulari 7febe3a282
gnu: grub: Re-enable test. 
* gnu/packages/grub.scm (grub)[arguments]: Re-enable test.
 2016-05-23 18:47:45 -04:00
Leo Famulari 88ac650c7b
gnu: vdirsyncer: Update to 0.11.0. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.11.0.
 2016-05-23 13:26:17 -04:00
Leo Famulari e1343994b0
gnu: git: Update to 2.8.3. 
* gnu/packages/version-control.scm (git): Update to 2.8.3.
(git-manpages)[source]: Update hash.
 2016-05-23 13:14:50 -04:00
Roel Janssen 031cf6b65e
gnu: Add r-zoo. 
* gnu/packages/statistics.scm (r-zoo): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-23 12:36:38 -04:00
Leo Famulari 148e8e8e75
gnu: borg: Update to 1.0.3. 
* gnu/packages/backup.scm (borg): Update to 1.0.3.
[source]: Remove pypi-uri.
 2016-05-23 12:27:12 -04:00
Ludovic Courtès 2cf0221f0e
gnu: pcre: Remove now-unneeded replacement. 
* gnu/packages/pcre.scm (pcre)[replacement]: Remove.
(pcre-fixed): Remove.
 2016-05-23 15:02:55 +02:00
Ludovic Courtès bc73a84398
Merge branch 'master' into core-updates 2016-05-23 15:02:26 +02:00
Roel Janssen f22debacb4
gnu: Add poppler-qt5. 
* gnu/packages/pdf.scm (poppler-qt5): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-05-23 14:35:23 +03:00
Ricardo Wurmus 524eee0298 gnu: Add slurm-drmaa. 
* gnu/packages/parallel.scm (slurm-drmaa): New variable.
 2016-05-23 12:55:40 +02:00
Ricardo Wurmus 0783787436 gnu: Add ParDRe. 
* gnu/packages/bioinformatics.scm (pardre): New variable.
 2016-05-23 12:55:09 +02:00
Efraim Flashner 624d4e2e6b
gnu: gnu-pw-mgr: Update to 2.0. 
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 2.0.
 2016-05-22 16:58:21 +03:00
Leo Famulari 13913c52d5
gnu: imagemagick: Update to 6.9.4-4. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4-4.
 2016-05-22 03:51:57 -04:00
Lukas Gradl 88bb4197c4 gnu: Add python2-rope. 
* gnu/packages/python.scm (python2-rope): New variable.
 2016-05-22 14:19:52 +10:00
Kei Yamashita 3c47489766
gnu: Add gnome-calendar. 
* gnu/packages/gnome.scm (gnome-calendar): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-21 23:30:37 +02:00
Matthew Jordan 548994142f
gnu: Add envstore. 
* gnu/package/shellutils.scm: New file.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-21 23:30:37 +02:00
Jan Nieuwenhuizen b9b447be64
gnu: Add sicp. 
* gnu/packages/scheme.scm (sicp): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-21 23:30:37 +02:00
Roel Janssen a56be436d0
gnu: Add dia. 
* gnu/packages/gnome.scm (dia): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-21 23:30:37 +02:00
Mark H Weaver 12b6f6527e
gnu: openssl: Remove workaround for GCC 4.9.3 (no longer used). 
* gnu/packages/tls.scm (openssl)[arguments]: In the 'configure' phase,
remove the workaround that passed "-mfpu=vfpv3" on armhf systems.
 2016-05-21 12:52:51 -04:00
Mark H Weaver 3c9a7185e4
gnu: linux-libre: Update to 4.5.5. 
* gnu/packages/linux.scm (linux-libre): Update to 4.5.5.
 2016-05-20 18:58:15 -04:00
Mark H Weaver 4483a1185d
gnu: linux-libre-4.4: Update to 4.4.11. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.11.
 2016-05-20 18:58:06 -04:00
Ricardo Wurmus 987a118334
gnu: Add default gcc-objc++. 
* gnu/packages/gcc.scm (gcc-objc++): New variable.
 2016-05-20 15:19:48 +02:00
Ricardo Wurmus a5948c0d41
gnu: Add gcc-objc++-4.9. 
* gnu/packages/gcc.scm (gcc-objc++-4.9): New variable.
 2016-05-20 15:19:48 +02:00
Ricardo Wurmus 8b196ad208
gnu: Add default gcc-objc. 
* gnu/packages/gcc.scm (gcc-objc): New variable.
 2016-05-20 15:19:48 +02:00
Ricardo Wurmus 2d69c1616d
gnu: Add gcc-objc-4.9. 
* gnu/packages/gcc.scm (gcc-objc-4.9): New variable.
 2016-05-20 15:19:33 +02:00
Ricardo Wurmus 813efdded1
gnu: r-rcpparmadillo: Update to 0.6.700.6.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.6.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
6.700.6.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 945eef85c5
gnu: armadillo: Update to 6.700.7. 
* gnu/packages/maths.scm (armadillo): Update to 6.700.7.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 7740f58128
gnu: r-genomation: Update to 1.4.2. 
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.4.2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus f6225d135c
gnu: r-jsonlite: Update to 0.9.20. 
* gnu/packages/web.scm (r-jsonlite): Update to 0.9.20.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus c969453e1c
gnu: r-plotly: Update to 3.6.0. 
* gnu/packages/statistics.scm (r-plotly): Update to 3.6.0.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 95513f284f
gnu: r-matrixstats: Update to 0.50.2. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.50.2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus b8f6a97ebd
gnu: r-r-rsp: Update to 0.30.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.30.0.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus f0c56a2411
gnu: r-rmarkdown: Update to 0.9.6. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 0.9.6.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 2f7ac060ff
gnu: r-plotrix: Update to 3.6-2. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 133f27b06a
gnu: r-devtools: Update to 1.11.1. 
* gnu/packages/statistics.scm (r-devtools): Update to 1.11.1.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 3624ad7150
gnu: r-git2r: Update to 0.15.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.15.0.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus c1e2c9d41a
gnu: r-openssl: Update to 0.9.3. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.3.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 383f6337a0
gnu: r-testthat: Update to 1.0.2. 
* gnu/packages/statistics.scm (r-testthat): Update to 1.0.2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 1b206aeb00
gnu: r-knitr: Update to 1.13. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.13.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus d5130e6345
gnu: r-highr: Update to 0.6. 
* gnu/packages/statistics.scm (r-highr): Update to 0.6.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus df25b0048a
gnu: r-formatr: Update to 1.4. 
* gnu/packages/statistics.scm (r-formatr): Update to 1.4.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 84e5368719
gnu: r-evaluate: Update to 0.9. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.9.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 9a0ccf43cc
gnu: r-bh: Update to 1.60.0-2. 
* gnu/packages/statistics.scm (r-bh): Update to 1.60.0-2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus a76b3f6914
gnu: r-dbi: Update to 0.4-1. 
* gnu/packages/statistics.scm (r-dbi): Update to 0.4-1.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus eb1a5b65c0
gnu: r-rcpp: Update to 0.12.5. 
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.5.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 8ede249e0a
gnu: r-genomicfeatures: Update to 1.24.2. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 192e1ea8d1
gnu: r-summarizedexperiment: Update to 1.2.2. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus d7420566a9
gnu: r-biocparallel: Update to 1.6.2. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 73af676feb
gnu: r-annotationdbi: Update to 1.34.2. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 679e670b36
gnu: r-variantannotation: Update to 1.18.1. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.18.1.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 186ed87337
gnu: r-genomeinfodb: Update to 1.8.1. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.1.
 2016-05-20 15:18:23 +02:00
Leo Famulari 0fc4a8afba
gnu: btrfs-progs: Update to 4.5.3. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.5.3.
 2016-05-19 21:04:22 -04:00
Jelle Licht 0e40755d35
gnu: jemalloc: Update to 4.2.0. 
* gnu/packages/jemalloc.scm (jemalloc): Update to 4.2.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-05-19 20:43:13 +03:00
Leo Famulari 119b83989d
gnu: expat: Fix CVE-2016-0718. Improve fix for CVE-2015-1283. 
* gnu/packages/patches/expat-CVE-2015-1283-refix.patch,
gnu/packages/patches/expat-CVE-2016-0718.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xml.scm (expat)[replacement]: New field.
(expat/fixed): New variable.
[source]: Use new patches.
 2016-05-19 10:27:18 -04:00
Ludovic Courtès 9684e30b9b
gnu: flann: Do not install .a files. 
* gnu/packages/maths.scm (flann)[arguments]: Add #:phases.
 2016-05-19 14:51:21 +02:00
Hartmut Goebel 458480235b
gnu: python: Add 'python' variables for different major/minor versions. 
* gnu/packages/python.scm (python-2): Rename variable to...
  (python-2.7): ...this.
  (python-2): Refer to "python-2.7".
  (python): Rename variable to...
  (python-3.4): ...this.
  (python-3): Refer to "python-3.4".
  (python): Refer to "python-3".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-19 14:51:21 +02:00
Ludovic Courtès 39b3033731
gnu: flann: Strip .mex file. 
* gnu/packages/maths.scm (flann)[arguments]: Add #:strip-directories.
 2016-05-19 14:51:21 +02:00
Ben Woodcroft 0947698c42 gnu: Add r-biased-urn. 
* gnu/packages/statistics.scm (r-biased-urn): New variable.
 2016-05-19 22:13:43 +10:00
Efraim Flashner 44c5f0258d
gnu: giflib: Use 'modify-phases'. 
* gnu/packages/image.scm (giflib)[arguments]: Use 'modify-phases'.
 2016-05-19 13:06:49 +03:00
Efraim Flashner 3fdb2a84be
gnu: giflib: Update to 5.1.4 [fixes CVE-2015-7555, CVE-2016-3977]. 
* gnu/packages/image.scm (giflib): Update to 5.1.4.
 2016-05-19 13:01:55 +03:00
humanitiesNerd 5c447e280e
gnu: Add emacs-smartparens. 
*  gnu/packages/emacs.scm (emacs-smartparens): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-05-19 11:45:15 +03:00
Kei Kebreau 21f05134fc
Update name for Kei Kebreau. 
* .mailmap: Add Kei Kebreau.
* gnu/local.mk: Replace "Kei Yamashita" with "Kei Kebreau".
* gnu/packages/calendar.scm: Likewise.
* gnu/packages/dillo.scm: Likewise.
* gnu/packages/fltk.scm: Likewise.
* gnu/packages/game-development.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/xfce.scm: Likewise.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-05-19 11:42:03 +03:00
Kei Yamashita b7b27a8f28
gnu: octave: Update to 4.0.2. 
* gnu/packages/maths.scm (octave): Update to 4.0.2.
[inputs]: Added cyrus-sasl, openssl.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-05-19 04:32:23 +03:00
Ludovic Courtès 91231156ce
gnu: Add ntfs-3g. 
* gnu/packages/linux.scm (ntfs-3g): New variable.
 2016-05-18 23:41:03 +02:00
Kei Yamashita 64851f4a23
gnu: wmbattery: Fix UPower-related memory leak. 
* gnu/packages/gnustep.scm (wmbattery)[source](snippet): New field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-05-18 23:41:03 +02:00
Efraim Flashner 65e46ca0ed
gnu: qtkeychain: Update to 0.6.2. 
* gnu/packages/qt.scm (qtkeychain): Update to 0.6.2.
 2016-05-18 18:06:47 +03:00
Ben Woodcroft bd9fe0f03b gnu: Add krona-tools. 
* gnu/packages/web.scm (krona-tools): New variable.
 2016-05-18 22:21:52 +10:00
Manolis Ragkousis 0affdfb805 gnu: hurd-headers: Update to 0.8. 
* gnu/packages/hurd.scm (hurd-headers): Update to version 0.8.
 2016-05-18 15:17:52 +03:00
Manolis Ragkousis eb3be3a791 gnu: mig: Update to 1.7. 
* gnu/packages/hurd.scm (mig): Update to version 1.7.
 2016-05-18 15:17:44 +03:00
Manolis Ragkousis 614f39271e gnu: gnumach-headers: Update to 1.7. 
* gnu/packages/hurd.scm (gnumach-headers): Update to version 1.7.
 2016-05-18 15:17:38 +03:00
Ben Woodcroft 7c544991dc gnu: diamond: Do not specify target architecture. 
* gnu/packages/bioinformatics.scm (diamond)[arguments]: Do not
specify target architecture.
 2016-05-18 21:25:06 +10:00
Ricardo Wurmus e62ffce538 gnu: Add Piranha. 
* gnu/packages/bioinformatics.scm (piranha): New variable.
 2016-05-18 11:59:34 +02:00
Efraim Flashner dbd40ac19d
gnu: python2-pandas: Fix native-inputs. 
* gnu/packages/python.scm (python2-pandas)[native-inputs]: Use python2-
versions of python-panda's native-inputs, not of inputs.
 2016-05-18 10:52:41 +03:00
Leo Famulari f1876bfc7a
gnu: Add signify. 
* gnu/packages/crypto.scm (signify): New variable.
 2016-05-17 17:52:59 -04:00
Leo Famulari ad42be8388
gnu: libndp: Update to 1.6 [fixes CVE-2016-3698]. 
* gnu/packages/networking.scm (libndp): Update to 1.6.
 2016-05-17 14:31:09 -04:00
humanitiesNerd 9576cc72dc gnu: Add emacs-zenburn-theme. 
* gnu/packages/emacs.scm (emacs-zenburn-theme): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-05-17 21:06:36 +03:00
Leo Famulari fb2b0f5c87
gnu: gd: Fix-CVE-2016-3074. 
* gnu/packages/patches/gd-CVE-2016-3074.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Use it.
 2016-05-17 13:18:15 -04:00
Ludovic Courtès bbb5d8aeea
gnu: gd: Specify 'cpe-name'. 
* gnu/packages/gd.scm (gd)[properties]: New field.
 2016-05-17 18:15:59 +02:00
Ludovic Courtès 99effc8faa
lint: Honor 'cpe-name' and 'cpe-version' package properties. 
* guix/scripts/lint.scm (package-name->cpe-name): Remove.
(package-vulnerabilities): Honor 'cpe-name' and 'cpe-version'
properties.
* gnu/packages/grub.scm (grub)[properties]: New field.
* gnu/packages/gnuzilla.scm (icecat)[properties]: Add 'cpe-name' and
'cpe-version'.
* doc/guix.texi (Invoking guix lint): Mention 'cpe-name'.
 2016-05-17 18:15:53 +02:00
Efraim Flashner 45ff4b568d
gnu: sqlite: Update to 3.12.2. 
* gnu/packages/databases.scm (sqlite): Update to 3.12.2.
 2016-05-17 17:07:47 +03:00
Efraim Flashner c19700c396
gnu: gnutls: Update to 3.5.0. 
* gnu/packages/tls.scm (gnutls): Update to 3.5.0.
 2016-05-17 17:06:29 +03:00
Federico Beffa 1c29f3ef84 gnu: emacs-constants: Remove old patch. 
* gnu/packages/patches/emacs-constants-lisp-like.patch: Remove it.
* gnu/local.mk (dist_patch_DATA): Remove entry for above patch.
 2016-05-17 14:17:38 +02:00
Federico Beffa f99f3f24ef gnu: emacs-constants: Update to 2.6. 
* gnu/packages/emacs.scm (emacs-constants): Change to versioned repository and
  update to 2.6.
 2016-05-17 14:01:20 +02:00
Ben Woodcroft 849485f5a0 gnu: sortmerna: Update to 2.1b. 
* gnu/packages/bioinformatics.scm (sortmerna): Update to 2.1b.
[inputs]: New field.
 2016-05-17 21:45:49 +10:00
Ben Woodcroft daaeed765a gnu: vsearch: Update to 1.11.1. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 1.11.1.
 2016-05-17 21:36:46 +10:00
Ben Woodcroft 122395f9fc gnu: diamond: Update to 0.8.1. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.1.
[source]: Remove 'snippet'.
[build-system]: Use cmake-build-system.
[arguments]: Remove modifications to phases.
[native-inputs]: Remove field.
[inputs]: Remove 'boost'.
 2016-05-17 21:07:00 +10:00
Ludovic Courtès 74d637397b
gnu: tar: Update to 1.29. 
* gnu/packages/base.scm (tar): Update to 1.29.
[source]: Remove 'tar-d_ino_in_dirent-fix.patch'.
[arguments]: New field.
* gnu/packages/patches/tar-d_ino_in_dirent-fix.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2016-05-17 10:46:26 +02:00
Ludovic Courtès 2135d1eb3f
gnu: gdbm: Update to 1.12. 
* gnu/packages/databases.scm (gdbm): Update to 1.12.
 2016-05-17 09:45:06 +02:00
Ludovic Courtès a9e41d2faf
gnu: emacs-constants: Factorize home-page in source URL. 
* gnu/packages/emacs.scm (emacs-constants): Move 'home-page' above.  Use
it in 'uri'.
 2016-05-17 09:41:40 +02:00
Ludovic Courtès 4f04243405
gnu: 'uncompressed-file-fetch' no longer depends on gzip. 
* gnu/packages/emacs.scm (uncompressed-file-fetch): Remove dependency on
GZIP.
 2016-05-17 09:41:40 +02:00
Efraim Flashner cb307c0833
gnu: cflow: Update to 1.5. 
* gnu/packages/code.scm (cflow): Update to 1.5.
 2016-05-17 09:04:38 +03:00
Christopher Allan Webber 11e4c1fd10 gnu: Add geiser-next. 
Also, I previously committed to this repository in 2015; add self to copyright
headers for that year too.

* gnu/packages/emacs.scm (geiser-next): New variable.
 2016-05-16 14:48:57 -05:00
Ricardo Wurmus 96101b6718
gnu: r-zlibbioc: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.18.0.
 2016-05-16 20:59:50 +02:00
Ricardo Wurmus a0fe3aeecf
gnu: r-motifrg: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.16.0.
 2016-05-16 20:59:38 +02:00
Ricardo Wurmus 1f5786a918
gnu: r-seqlogo: Update to 1.38.0. 
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.38.0.
 2016-05-16 20:59:27 +02:00
Ricardo Wurmus 8adc3b628d
gnu: r-genomation: Update to 1.4.0. 
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.4.0.
 2016-05-16 20:59:14 +02:00
Ricardo Wurmus 7555817c2b
gnu: r-seqpattern: Update to 1.4.0. 
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.4.0.
 2016-05-16 20:59:04 +02:00
Ricardo Wurmus d1bff89d26
gnu: r-impute: Update to 1.46.0. 
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.46.0.
 2016-05-16 20:58:49 +02:00
Ricardo Wurmus 5190ed1751
gnu: r-bsgenome: Update to 1.40.0. 
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.40.0.
 2016-05-16 20:58:35 +02:00
Ricardo Wurmus e48e88c217
gnu: r-topgo: Update to 2.24.0. 
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.24.0.
[propagated-inputs]: Add r-matrixstats.
 2016-05-16 20:58:24 +02:00
Ricardo Wurmus 0c56023557
gnu: r-graph: Update to 1.50.0. 
* gnu/packages/bioinformatics.scm (r-graph): Update to 1.50.0.
 2016-05-16 20:58:08 +02:00
Ricardo Wurmus c12b0a5a30
gnu: r-genomicfeatures: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.0.
 2016-05-16 20:57:55 +02:00
Ricardo Wurmus d23fbf1eb9
gnu: r-rtracklayer: Update to 1.32.0. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.32.0.
 2016-05-16 20:57:43 +02:00
Ricardo Wurmus 3cd551ea7b
gnu: r-genomicalignments: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.8.0.
 2016-05-16 20:57:30 +02:00
Ricardo Wurmus d848ed7cf2
gnu: r-summarizedexperiment: Update to 1.2.0. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.0.
 2016-05-16 20:57:21 +02:00
Ricardo Wurmus b4c5a0db22
gnu: r-rsamtools: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.24.0.
 2016-05-16 20:57:10 +02:00
Ricardo Wurmus 2477d9773a
gnu: r-biostrings: Update to 2.40.0. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.40.0.
 2016-05-16 20:56:58 +02:00
Ricardo Wurmus 6a2a0de1ab
gnu: r-biocparallel: Update to 1.6.0. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.0.
 2016-05-16 20:56:39 +02:00
Ricardo Wurmus 63cea37234
gnu: r-biomart: Update to 2.28.0. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.28.0.
 2016-05-16 20:56:29 +02:00
Ricardo Wurmus c4a4e17938
gnu: r-annotationdbi: Update to 1.34.0. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.0.
 2016-05-16 20:56:19 +02:00
Ricardo Wurmus 4466a02c9f
gnu: r-biobase: Update to 2.32.0. 
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.32.0.
 2016-05-16 20:56:09 +02:00
Ricardo Wurmus 828980cad6
gnu: r-genomicranges: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.24.0.
 2016-05-16 20:55:58 +02:00
Ricardo Wurmus e782ca3e97
gnu: r-xvector: Update to 0.12.0. 
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.12.0.
 2016-05-16 20:55:46 +02:00
Ricardo Wurmus 052ee32b24
gnu: r-variantannotation: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to
  1.18.0.
 2016-05-16 20:55:32 +02:00
Ricardo Wurmus d1ab3d8fa5
gnu: r-genomeinfodb: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.0.
 2016-05-16 20:55:20 +02:00
Ricardo Wurmus 952ff8c862
gnu: r-iranges: Update to 2.6.0. 
* gnu/packages/bioinformatics (r-iranges): Update to 2.6.0.
 2016-05-16 20:55:11 +02:00
Ricardo Wurmus 3654a61146
gnu: r-s4vectors: Update to 0.10.0. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.0.
 2016-05-16 20:54:59 +02:00
Ricardo Wurmus a936bf59ea
gnu: r-dnacopy: Update to 1.46.0. 
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.46.0.
 2016-05-16 20:54:37 +02:00
Ricardo Wurmus dbfeba5209
gnu: r-biocgenerics: Update to 0.18.0. 
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.18.0.
 2016-05-16 20:53:48 +02:00
Leo Famulari ec0ea24d1a
gnu: openldap: Update to 2.4.44. 
* gnu/packages/openldap.scm (openldap): Update to 2.4.44.
[replacement]: Remove field.
(openldap-2.4.44): Remove variable.
 2016-05-16 14:53:06 -04:00
Leo Famulari dffded6211
gnu: libtasn1: Update to 4.8. 
* gnu/packages/tls.scm (libtasn1): Update to 4.8.
[replacement]: Remove field.
(libtasn1/fixed): Remove variable.
 2016-05-16 14:52:34 -04:00
Leo Famulari 1d30d554b5
gnu: openssl: Update to 1.0.2h. 
* gnu/packages/tls.scm (openssl): Update to 1.0.2h.
[replacement]: Remove field.
(openssl/fixed): Remove variable.
 2016-05-16 14:52:34 -04:00
Leo Famulari af3ac1f5f7
gnu: imagemagick: Update to 6.9.4-1. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4-1.
 2016-05-16 14:27:48 -04:00
Efraim Flashner b6c2f7dafd
gnu: libgit2: Update to 0.24.1. 
* gnu/packages/version-control.scm (libgit2): Update to 0.24.1.
 2016-05-16 19:34:49 +03:00
Efraim Flashner 8a0ac5bd55
gnu: tmux: Update to 2.2. 
* gnu/packages/tmux.scm (tmux): Update to 2.2.
 2016-05-16 19:34:49 +03:00
Alex Griffin d3699b311b gnu: Add ledger. 
* gnu/packages/finance.scm (ledger): New variable.

Co-authored-by: Alex Kost <alezost@gmail.com>
 2016-05-16 18:01:18 +03:00
Alex Griffin f17a544756 gnu: Add utfcpp. 
* gnu/packages/textutils.scm (utfcpp): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-05-16 18:01:18 +03:00
Nicolas Goaziou 80ed14d38f gnu: asymptote: Install Emacs data. 
* gnu/packages/plotutils.scm (asymptote)[arguments]: Add a phase to
  install Emacs-Lisp files in an appropriate place.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-05-16 18:01:18 +03:00
Alex Kost 47c96a577d gnu: mu: Update to 0.9.16. 
* gnu/packages/mail.scm (%mu-gtester-patch): Remove.
(mu): Update to 0.9.16.
[source]: Remove 'patches'.
 2016-05-16 18:01:18 +03:00
Alex Kost 704f219668 gnu: mu: Install emacs autoloads. 
* gnu/packages/mail.scm (mu)[arguments]: Add 'install-emacs-autoloads'
  phase.  Use appropriate modules and imported-modules.
 2016-05-16 18:01:18 +03:00
Alex Kost 789bda83d2 gnu: mu: Install emacs files in a proper place. 
* gnu/packages/mail.scm (mu)[arguments]: Add 'patch-configure.ac' phase
  to avoid adding "mu4e" sub-directory to 'lispdir' variable.
 2016-05-16 18:01:18 +03:00
Alex Kost 99404fff9f gnu: mu: Use 'modify-phases'. 
* gnu/packages/mail.scm (mu): Use 'modify-phases'.
 2016-05-16 18:01:18 +03:00
Efraim Flashner 7d0c3c8d01
gnu: python-pandas: Update to 0.18.1. 
* gnu/packages/python.scm (python-pandas): Update to 0.18.1.
[native-inputs]: Remove python-setuptools.
[properties]: Define python2-pandas.
(python2-pandas)[native-inputs]: Add python2-setuptools.
* gnu/packages/patches/python-pandas-fix-tslib-test-failure.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-05-16 17:39:42 +03:00
Ricardo Wurmus 8226c2717c gnu:: java-swt: Use ant-build-system. 
* gnu/packages/java.scm (java-swt): Use ant-build-system.
[native-inputs]: Remove JDK.
 2016-05-16 16:17:18 +02:00
Ricardo Wurmus 81b98756a3 gnu: Add SBC. 
* gnu/packages/linux.scm (sbc): New variable.
 2016-05-16 16:16:21 +02:00
Ricardo Wurmus 002528bca5 gnu: rapicorn: Fix tests. 
* gnu/packages/graphics.scm (rapicorn)[arguments]: Add build phases
"fix-tests" and "pre-check".  Generalize "replace-/bin/ls" phase to
"replace-fhs-paths".
[propagated-inputs]: Add python2-enum34.
[native-inputs]: Add xorg-server.
 2016-05-16 16:16:15 +02:00
Federico Beffa 549f951283 gnu: Add Chez-Scheme. 
* gnu/packages/scheme.scm (chez-scheme): New variable.
 2016-05-16 14:28:25 +02:00
Federico Beffa 9f9861d7e5 gnu: netpbm: Return #t from custom phases. 
* gnu/packages/netpbm.scm (netpbm)[arguments]: Do it.
 2016-05-16 14:26:27 +02:00
Federico Beffa 2492581f0c gnu: netpbm: Fix location of X color name database. 
* gnu/packages/netpbm.scm (netpbm)[inputs]: Add 'xorg-rgb'.
  [arguments]: In the 'configure' phase, patch 'pm_config.in.h' with the full
  path to the 'rgb.txt' file.
 2016-05-16 14:23:46 +02:00
Federico Beffa 1de1c56db7 gnu: netpbm: Use 'modify-phases' syntax. 
* gnu/packages/netpbm.scm (netpbm)[arguments]: Do it.
 2016-05-16 14:23:30 +02:00
Federico Beffa 5fdd142072 gnu: Add the X color name database file. 
* gnu/packages/xorg.scm (xorg-rgb): New variable.
 2016-05-16 14:23:17 +02:00
Efraim Flashner 44877dcc66
gnu: hugs: Update urls. 
* gnu/packages/hugs.scm (hugs)[source]: Update url.
[home-page]: Use https.
 2016-05-16 14:47:59 +03:00
Efraim Flashner a83e604662
gnu: hmmer: Update urls. 
* gnu/packages/bioinformatics.scm (hmmer)[source]: Project has moved to
eddylab, with their downloads.
[home-page]: Update to new homepage.
 2016-05-16 14:28:53 +03:00
Efraim Flashner d03f944614
gnu: guile-irregex: Update to 0.9.4. 
* gnu/packages/guile.scm (guile-irregex): Update to 0.9.4.
 2016-05-16 14:18:21 +03:00
Efraim Flashner 3a66217ff2
gnu: gkrellm: Update urls. 
* gnu/packages/gkrellm.scm (gkrellm)[source]: Download from new site.
[home-page]: Update to new site.
 2016-05-16 14:12:54 +03:00
Efraim Flashner bf512da1e4
gnu: giblib: Add mirror for source. 
* gnu/packages/image.scm (giblib)[source]: Add a download mirror from
slackbuilds.
 2016-05-16 14:07:47 +03:00
Efraim Flashner 284539ce86
gnu: geeqie: Update source location. 
* gnu/packages/geeqie.scm (geeqie)[source]: Download from Github.
[home-page]: Project has moved to new url.
 2016-05-16 12:59:40 +03:00
Efraim Flashner fd02719c7b
gnu: fvwm: Update to 2.6.6. 
* gnu/packages/fvwm.scm (fvwm): Update to 2.6.6.
[source]: Change download location to Github.
 2016-05-16 12:31:25 +03:00
Efraim Flashner 66395a6157
gnu: gmsh: Add missing inputs. 
* gnu/packages/maths.scm (gmsh)[inputs]: Add fontconfig, libxft.
 2016-05-16 10:18:43 +03:00
Leo Famulari b4370be9de
gnu: python-cryptography, python-cryptography-vectors: Update to 1.3.2. 
* gnu/packages/python.scm (python-cryptography): Update to 1.3.2.
(python-cryptography-vectors): Update to 1.3.2.
 2016-05-16 02:13:18 -04:00
Efraim Flashner 3fef0a2fa1
gnu: unixodbc: Update to 2.3.4. 
* gnu/packages/databases.scm (unixodbc): Update to 2.3.4.
 2016-05-16 06:10:06 +03:00
Efraim Flashner 6747a852c5
gnu: tdb: Update to 1.3.9. 
* gnu/packages/databases.scm (tdb): Update to 1.3.9.
 2016-05-16 06:10:06 +03:00
Efraim Flashner ec374039e4
gnu: postgresql: Update to 9.5.3. 
* gnu/packages/databases.scm (postgresql): Update to 9.5.3.
 2016-05-16 06:10:06 +03:00
Efraim Flashner 9a12ca7771
gnu: wireless-regdb: Update to 2016.05.02. 
* gnu/packages/linux.scm (wireless-regdb): Update to 2016.05.02.
 2016-05-16 06:10:06 +03:00
Efraim Flashner 2f9e312a39
gnu: iw: Update to 4.3. 
* gnu/packages/linux.scm (iw): Update to 4.3.
[source]: Use kernel mirror.
[home-page]: Update to new home-page.
 2016-05-16 06:10:06 +03:00
Efraim Flashner 30897c60a4
gnu: mdadm: Update to 3.4. 
* gnu/packages/linux.scm (mdadm): Update to 3.4.
[source]: Remove patch.
* gnu/packages/patches/mdadm-gcc-4.9-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-05-16 06:10:06 +03:00
Efraim Flashner e9eb24b1b2
gnu: bluez: Update to 5.39. 
* gnu/packages/linux.scm (bluez): Update to 5.39.
[source]: Use kernel mirror.
 2016-05-16 06:10:06 +03:00
Efraim Flashner 2b193389d2
gnu: libical: Update to 2.0.0. 
* gnu/packages/calendar.scm (libical): Update to 2.0.0.
[arguments]: Add configure-flag to add "/lib64" to the rpath.
 2016-05-16 06:10:06 +03:00
Efraim Flashner a2ccaa0d79
gnu: qemu: Update to 2.6.0. 
* gnu/packages/qemu.scm (qemu): Update to 2.6.0.
[arguments]: Re-enable parallel tests.
 2016-05-16 06:10:06 +03:00
Efraim Flashner 1fb8e074f1
gnu: libqmi: Update to 1.14.2. 
* gnu/packages/freedesktop.scm (libqmi): Update to 1.14.2.
 2016-05-16 06:10:06 +03:00